Wall clock time and date at job start Fri Apr 10 2020 18:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00313 * 2 1 4 4 H 1.48491 * 109.47400 * 239.99638 * 3 2 1 5 5 H 1.48502 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47105 * 119.99584 * 3 2 1 7 7 C 1.38811 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00104 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00304 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00276 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47478 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47582 * 174.73995 * 11 10 9 13 13 H 1.08995 * 109.70078 * 301.16910 * 12 11 10 14 14 C 1.53194 * 109.58318 * 61.52366 * 12 11 10 15 15 C 1.53035 * 109.33709 * 174.44099 * 14 12 11 16 16 C 1.53037 * 109.53578 * 298.61322 * 15 14 12 17 17 C 1.53192 * 109.31037 * 61.37137 * 16 15 14 18 18 N 1.46922 * 108.77567 * 305.35977 * 17 16 15 19 19 C 1.34770 * 120.63442 * 233.63187 * 18 17 16 20 20 O 1.21279 * 120.00428 * 174.86762 * 19 18 17 21 21 C 1.50708 * 120.00019 * 354.86851 * 19 18 17 22 22 C 1.52998 * 109.47413 * 179.97438 * 21 19 18 23 23 N 1.46491 * 109.46973 * 179.97438 * 22 21 19 24 24 C 1.34782 * 119.99901 * 179.97438 * 23 22 21 25 25 N 1.34779 * 120.00055 * 180.02562 * 24 23 22 26 26 O 1.21587 * 120.00154 * 0.02562 * 24 23 22 27 27 H 0.96999 * 119.99659 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99492 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47078 * 59.99731 * 10 9 7 30 30 H 1.09000 * 109.47140 * 300.00066 * 10 9 7 31 31 H 1.09007 * 109.46604 * 54.74648 * 11 10 9 32 32 H 1.08997 * 109.47243 * 294.74443 * 11 10 9 33 33 H 1.08998 * 109.49621 * 54.46668 * 14 12 11 34 34 H 1.09004 * 109.49644 * 294.40823 * 14 12 11 35 35 H 1.08999 * 109.46464 * 58.64285 * 15 14 12 36 36 H 1.09002 * 109.45801 * 178.61310 * 15 14 12 37 37 H 1.09012 * 109.49626 * 181.31585 * 16 15 14 38 38 H 1.08998 * 109.50372 * 301.41813 * 16 15 14 39 39 H 1.08999 * 109.58838 * 65.15256 * 17 16 15 40 40 H 1.09006 * 109.58456 * 185.57247 * 17 16 15 41 41 H 1.09003 * 109.46874 * 300.00485 * 21 19 18 42 42 H 1.09000 * 109.46736 * 59.99822 * 21 19 18 43 43 H 1.08995 * 109.47274 * 300.00338 * 22 21 19 44 44 H 1.09004 * 109.46654 * 59.99840 * 22 21 19 45 45 H 0.96998 * 120.00468 * 0.02562 * 23 22 21 46 46 H 0.97002 * 119.99971 * 0.02562 * 25 24 23 47 47 H 0.97004 * 119.99849 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 6 1.8241 -6.1410 -0.1290 13 1 2.4053 -6.1405 -1.0511 14 6 2.7625 -6.3144 1.0694 15 6 3.4160 -7.6967 1.0054 16 6 2.3352 -8.7777 1.0787 17 6 1.3919 -8.6330 -0.1197 18 7 0.8707 -7.2596 -0.1480 19 6 -0.4565 -7.0295 -0.1903 20 8 -0.8779 -5.8945 -0.1194 21 6 -1.4173 -8.1828 -0.3255 22 6 -2.8519 -7.6515 -0.3481 23 7 -3.7857 -8.7725 -0.4802 24 6 -5.1131 -8.5425 -0.5215 25 7 -5.9723 -9.5739 -0.6425 26 8 -5.5355 -7.4047 -0.4496 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 2.6840 -3.7141 0.8922 30 1 2.6853 -3.7150 -0.8878 31 1 0.3771 -4.7109 -0.8376 32 1 0.5003 -4.8158 0.9351 33 1 2.1923 -6.2239 1.9940 34 1 3.5344 -5.5453 1.0414 35 1 3.9657 -7.7955 0.0694 36 1 4.1029 -7.8128 1.8438 37 1 2.8031 -9.7621 1.0565 38 1 1.7691 -8.6641 2.0031 39 1 1.9378 -8.8358 -1.0410 40 1 0.5647 -9.3358 -0.0204 41 1 -1.2133 -8.7188 -1.2524 42 1 -1.2941 -8.8593 0.5202 43 1 -3.0556 -7.1157 0.5790 44 1 -2.9753 -6.9746 -1.1936 45 1 -3.4488 -9.6803 -0.5372 46 1 -5.6353 -10.4817 -0.6995 47 1 -6.9276 -9.4083 -0.6726 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496420622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:33 Heat of formation + Delta-G solvation = -85.983078 kcal Electronic energy + Delta-G solvation = -26444.654878 eV Core-core repulsion = 22661.332102 eV Total energy + Delta-G solvation = -3783.322776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.65094 -40.78329 -38.55521 -37.00656 -36.23556 -34.79070 -34.46282 -33.81304 -32.50826 -31.18753 -29.26477 -26.66214 -25.44669 -25.02092 -23.66521 -22.31221 -22.03475 -21.72821 -20.01084 -19.25281 -19.06338 -18.27121 -17.53396 -17.15379 -17.03636 -16.55599 -16.26181 -15.76611 -15.62994 -15.42876 -15.25562 -15.18073 -14.97623 -14.83603 -14.59880 -14.26702 -13.98004 -13.75961 -13.34262 -12.94746 -12.84224 -12.73639 -12.68586 -12.54660 -12.23722 -12.16662 -11.89551 -11.85064 -11.75550 -11.57086 -11.48224 -11.34214 -10.92858 -10.76141 -10.03405 -10.02048 -9.47109 -9.03068 -7.95582 -5.27086 1.43073 1.49019 1.55338 1.69449 1.71096 2.15742 2.21077 2.54829 3.36169 3.46948 3.67163 3.74031 3.86651 3.95815 4.02939 4.08824 4.15063 4.18228 4.30377 4.42654 4.50869 4.52912 4.63396 4.76048 4.78135 4.81974 4.87362 4.93780 4.96327 5.01994 5.14925 5.20888 5.27336 5.40327 5.40548 5.41732 5.50414 5.54434 5.74795 5.91643 6.03224 6.24923 6.52266 7.14649 7.28747 7.30441 7.66814 8.06766 8.30924 9.28468 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.010343 B = 0.003295 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.421803 B = 8495.878835 C =11060.915648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.084 4.084 3 Si 0.984 3.016 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.080 0.920 9 N -0.750 5.750 10 C 0.147 3.853 11 C -0.090 4.090 12 C 0.158 3.842 13 H 0.081 0.919 14 C -0.130 4.130 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.100 3.900 18 N -0.607 5.607 19 C 0.498 3.502 20 O -0.575 6.575 21 C -0.131 4.131 22 C 0.156 3.844 23 N -0.724 5.724 24 C 0.693 3.307 25 N -0.843 5.843 26 O -0.655 6.655 27 H 0.251 0.749 28 H 0.369 0.631 29 H 0.022 0.978 30 H 0.019 0.981 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.420 0.580 46 H 0.417 0.583 47 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 -35.454 -0.711 35.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.275 4.275 3 Si 0.811 3.189 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.382 4.382 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.020 3.980 11 C -0.128 4.128 12 C 0.054 3.946 13 H 0.099 0.901 14 C -0.169 4.169 15 C -0.154 4.154 16 C -0.170 4.170 17 C -0.021 4.021 18 N -0.340 5.340 19 C 0.287 3.713 20 O -0.454 6.454 21 C -0.170 4.170 22 C 0.030 3.970 23 N -0.382 5.382 24 C 0.391 3.609 25 N -0.413 5.413 26 O -0.537 6.537 27 H 0.060 0.940 28 H 0.200 0.800 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.136 0.864 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.258 0.742 46 H 0.249 0.751 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.868 -33.817 -0.607 33.834 hybrid contribution -0.393 1.031 0.059 1.105 sum 0.476 -32.786 -0.548 32.794 Atomic orbital electron populations 1.69888 1.07041 1.26234 1.59381 1.25771 0.96478 1.01720 1.03553 0.85064 0.77059 0.78294 0.78441 1.19926 1.22072 1.19954 1.19690 0.91591 0.85330 1.41587 0.90249 1.42665 1.05557 1.01620 1.89371 1.20998 0.94182 0.85503 0.97305 1.21903 0.96060 0.92870 1.01973 1.21121 0.89676 0.84669 0.99157 0.90145 1.21997 0.98396 0.99531 0.96926 1.21531 0.98043 0.92677 1.03141 1.21938 0.96853 1.00121 0.98065 1.22167 0.99629 0.80518 0.99792 1.48285 1.04658 1.08321 1.72779 1.21179 0.83535 0.90744 0.75827 1.90930 1.78423 1.25446 1.50644 1.21784 0.90441 0.96764 1.08044 1.20609 0.87502 0.87929 1.00928 1.44675 1.03502 1.10976 1.79060 1.16314 0.82345 0.84766 0.77488 1.42717 1.09679 1.08464 1.80397 1.91002 1.78600 1.23892 1.60218 0.94002 0.80037 0.95969 0.96336 0.92539 0.93847 0.93264 0.91268 0.90655 0.90888 0.87611 0.92301 0.89436 0.86369 0.84480 0.84509 0.94036 0.94070 0.74205 0.75122 0.74763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.95 13.06 21.65 0.28 -65.66 16 2 C -0.08 -5.25 5.50 84.86 0.47 -4.78 16 3 Si 0.98 49.44 29.55 68.60 2.03 51.47 16 4 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 6 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.25 -15.46 9.99 84.03 0.84 -14.62 16 8 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 9 N -0.75 -44.31 5.60 -343.46 -1.92 -46.24 16 10 C 0.15 6.77 5.80 86.38 0.50 7.27 16 11 C -0.09 -3.64 3.25 30.59 0.10 -3.54 16 12 C 0.16 4.30 3.00 44.96 0.14 4.44 16 13 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 14 C -0.13 -3.04 4.89 30.67 0.15 -2.89 16 15 C -0.12 -1.63 5.88 30.62 0.18 -1.45 16 16 C -0.13 -1.20 6.08 30.67 0.19 -1.01 16 17 C 0.10 0.90 6.33 86.36 0.55 1.44 16 18 N -0.61 -12.63 2.97 -794.86 -2.36 -14.99 16 19 C 0.50 12.69 7.61 87.66 0.67 13.36 16 20 O -0.57 -22.60 11.39 -3.03 -0.03 -22.64 16 21 C -0.13 -1.73 4.22 29.85 0.13 -1.61 16 22 C 0.16 3.52 4.96 86.38 0.43 3.95 16 23 N -0.72 -10.74 5.56 -478.55 -2.66 -13.40 16 24 C 0.69 15.00 8.84 179.05 1.58 16.59 16 25 N -0.84 -8.33 8.88 -184.74 -1.64 -9.97 16 26 O -0.65 -23.62 17.18 -3.99 -0.07 -23.69 16 27 H 0.25 16.35 8.31 -92.71 -0.77 15.58 16 28 H 0.37 23.88 7.67 -92.71 -0.71 23.17 16 29 H 0.02 1.00 6.89 -2.39 -0.02 0.98 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 2.63 6.38 -2.38 -0.02 2.61 16 32 H 0.04 1.98 7.10 -2.39 -0.02 1.96 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.75 6.91 -2.39 -0.02 1.74 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 38 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.12 0.24 5.96 -2.38 -0.01 0.23 16 41 H 0.14 0.81 8.11 -2.39 -0.02 0.79 16 42 H 0.14 0.77 7.48 -2.39 -0.02 0.76 16 43 H 0.04 1.24 8.10 -2.39 -0.02 1.22 16 44 H 0.04 1.24 8.10 -2.38 -0.02 1.22 16 45 H 0.42 1.70 8.49 -92.71 -0.79 0.91 16 46 H 0.42 0.41 8.84 -92.71 -0.82 -0.41 16 47 H 0.42 3.85 8.93 -92.71 -0.83 3.03 16 Total: -1.00 -98.31 372.10 -2.60 -100.91 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -2.13 Total: 27.06 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 5.91 Total: 17.15 kcal Atomic # 7 Polarization: -141.95 SS G_CDS: -8.31 Total: -150.26 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -0.10 Total: -46.33 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.03 Total: 51.47 kcal Total: -98.31 -2.60 -100.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496420622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.930 kcal (2) G-P(sol) polarization free energy of solvation -98.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds