Wall clock time and date at job start Fri Apr 10 2020 18:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46502 * 120.00333 * 2 1 4 4 C 1.52997 * 109.47292 * 276.16491 * 3 2 1 5 5 C 1.53003 * 109.46992 * 186.09612 * 4 3 2 6 6 N 1.46503 * 109.47266 * 180.02562 * 5 4 3 7 7 C 1.36934 * 120.00266 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99888 * 359.97438 * 7 6 5 9 9 C 1.38807 * 120.00015 * 179.97438 * 7 6 5 10 10 N 1.31617 * 120.00010 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99987 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47316 * 89.99790 * 11 9 7 13 13 H 1.48500 * 109.47089 * 209.99929 * 11 9 7 14 14 H 1.48504 * 109.47276 * 329.99968 * 11 9 7 15 15 C 1.34775 * 119.99885 * 180.02562 * 2 1 3 16 16 O 1.21278 * 119.99983 * 5.93186 * 15 2 1 17 17 C 1.50709 * 120.00044 * 185.93252 * 15 2 1 18 18 H 1.08999 * 109.49463 * 45.46423 * 17 15 2 19 19 C 1.53041 * 109.49597 * 165.52843 * 17 15 2 20 20 C 1.53044 * 109.53407 * 181.31405 * 19 17 15 21 21 C 1.53189 * 109.31491 * 298.63717 * 20 19 17 22 22 N 1.46923 * 108.77449 * 54.63697 * 21 20 19 23 23 C 1.34784 * 120.62986 * 126.43521 * 22 21 20 24 24 N 1.34775 * 119.99809 * 5.23808 * 23 22 21 25 25 O 1.21580 * 119.99540 * 185.23731 * 23 22 21 26 26 C 1.46937 * 118.76401 * 306.40772 * 22 21 20 27 27 H 1.08997 * 109.47640 * 85.62041 * 1 2 3 28 28 H 1.09006 * 109.47559 * 205.62432 * 1 2 3 29 29 H 1.09009 * 109.46929 * 325.61698 * 1 2 3 30 30 H 1.09004 * 109.46935 * 156.15774 * 3 2 1 31 31 H 1.09007 * 109.46907 * 36.16306 * 3 2 1 32 32 H 1.08998 * 109.47263 * 306.09018 * 4 3 2 33 33 H 1.08999 * 109.47473 * 66.09475 * 4 3 2 34 34 H 1.09007 * 109.46851 * 299.99842 * 5 4 3 35 35 H 1.08998 * 109.47517 * 59.99280 * 5 4 3 36 36 H 0.96998 * 119.99588 * 359.97438 * 6 5 4 37 37 H 0.97003 * 120.00000 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.46249 * 301.34002 * 19 17 15 39 39 H 1.09004 * 109.45744 * 61.31295 * 19 17 15 40 40 H 1.09000 * 109.49536 * 58.59116 * 20 19 17 41 41 H 1.09002 * 109.49207 * 178.64931 * 20 19 17 42 42 H 1.08997 * 109.58658 * 174.42436 * 21 20 19 43 43 H 1.08998 * 109.58548 * 294.84749 * 21 20 19 44 44 H 0.97002 * 120.00214 * 4.56176 * 24 23 22 45 45 H 0.97000 * 119.99352 * 184.56551 * 24 23 22 46 46 H 1.09003 * 109.56275 * 293.78904 * 26 22 21 47 47 H 1.08999 * 109.61237 * 173.36215 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3184 1.7878 -1.4341 5 6 3.2113 3.0302 -1.4532 6 7 3.3266 3.5277 -2.8263 7 6 4.0811 4.6394 -3.0907 8 1 4.5908 5.1497 -2.2869 9 6 4.1907 5.1104 -4.3918 10 7 3.5699 4.4882 -5.3715 11 14 5.2194 6.6274 -4.7524 12 1 6.6167 6.2196 -5.0463 13 1 4.6547 7.3409 -5.9259 14 1 5.2045 7.5278 -3.5715 15 6 2.1387 -1.1672 -0.0005 16 8 1.5372 -2.2146 -0.1095 17 6 3.6398 -1.1708 0.1344 18 1 3.9349 -0.4902 0.9330 19 6 4.1194 -2.5858 0.4659 20 6 5.6404 -2.5840 0.6353 21 6 6.2961 -2.1465 -0.6782 22 7 5.7322 -0.8505 -1.0795 23 6 6.5384 0.1961 -1.3468 24 7 7.8761 0.0325 -1.3503 25 8 6.0587 1.2876 -1.5848 26 6 4.2727 -0.7165 -1.1846 27 1 -0.3634 0.0785 -1.0246 28 1 -0.3634 -0.9266 0.4444 29 1 -0.3633 0.8482 0.5804 30 1 3.1932 1.1133 0.4154 31 1 1.6606 1.9982 0.6065 32 1 2.7579 1.0149 -2.0645 33 1 1.3290 2.0457 -1.8119 34 1 2.7717 3.8032 -0.8227 35 1 4.2007 2.7724 -1.0754 36 1 2.8684 3.0695 -3.5482 37 1 3.6468 4.8172 -6.2808 38 1 3.6512 -2.9204 1.3915 39 1 3.8453 -3.2613 -0.3446 40 1 5.9172 -1.8900 1.4290 41 1 5.9787 -3.5871 0.8950 42 1 7.3721 -2.0480 -0.5345 43 1 6.0950 -2.8877 -1.4516 44 1 8.2571 -0.8509 -1.2260 45 1 8.4580 0.7982 -1.4769 46 1 3.9066 -1.3408 -1.9997 47 1 4.0136 0.3251 -1.3746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498577643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:43 Heat of formation + Delta-G solvation = -72.669128 kcal Electronic energy + Delta-G solvation = -27901.754506 eV Core-core repulsion = 24119.009067 eV Total energy + Delta-G solvation = -3782.745439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85378 -40.68026 -38.13166 -37.77854 -36.31678 -34.99783 -33.85578 -33.28863 -32.38429 -31.31152 -28.31254 -26.92045 -26.38566 -24.83559 -24.38603 -22.68388 -22.36994 -20.67502 -19.92611 -19.35634 -19.07338 -18.21701 -17.78665 -17.34612 -16.73286 -16.55999 -16.33074 -15.91128 -15.63339 -15.40153 -15.26267 -15.10021 -15.05124 -14.44494 -14.32874 -14.13651 -13.91046 -13.51684 -13.48037 -13.35717 -12.99831 -12.77191 -12.73248 -12.56583 -12.29887 -12.11952 -11.98809 -11.94443 -11.82183 -11.75102 -11.39212 -11.20096 -10.86413 -10.84918 -10.57465 -9.78525 -9.58026 -8.91538 -7.89834 -5.16702 1.37601 1.45518 1.49289 1.57149 1.83412 2.00904 2.26176 2.59824 3.27204 3.40555 3.43978 3.69462 3.76008 3.87978 3.91756 4.04176 4.07267 4.17299 4.30167 4.45629 4.50677 4.53533 4.57035 4.61465 4.67432 4.68947 4.75135 4.76728 4.90386 4.90802 4.94833 5.05423 5.12258 5.30366 5.38626 5.39211 5.50051 5.51823 5.56494 5.88916 6.09458 6.26004 6.32605 7.01058 7.04155 7.37760 7.75432 8.15416 8.38107 9.34609 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.004547 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.143479 B = 6155.937305 C = 7942.690979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.611 5.611 3 C 0.118 3.882 4 C -0.131 4.131 5 C 0.157 3.843 6 N -0.740 5.740 7 C -0.229 4.229 8 H 0.070 0.930 9 C -0.081 4.081 10 N -0.974 5.974 11 Si 0.973 3.027 12 H -0.290 1.290 13 H -0.293 1.293 14 H -0.268 1.268 15 C 0.518 3.482 16 O -0.571 6.571 17 C -0.112 4.112 18 H 0.108 0.892 19 C -0.097 4.097 20 C -0.124 4.124 21 C 0.101 3.899 22 N -0.624 5.624 23 C 0.690 3.310 24 N -0.849 5.849 25 O -0.618 6.618 26 C 0.124 3.876 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.021 0.979 35 H 0.028 0.972 36 H 0.369 0.631 37 H 0.249 0.751 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.410 0.590 45 H 0.417 0.583 46 H 0.055 0.945 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.024 -17.584 17.175 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.342 5.342 3 C -0.005 4.005 4 C -0.170 4.170 5 C 0.031 3.969 6 N -0.382 5.382 7 C -0.362 4.362 8 H 0.088 0.912 9 C -0.273 4.273 10 N -0.626 5.626 11 Si 0.802 3.198 12 H -0.218 1.218 13 H -0.220 1.220 14 H -0.193 1.193 15 C 0.307 3.693 16 O -0.450 6.450 17 C -0.134 4.134 18 H 0.126 0.874 19 C -0.135 4.135 20 C -0.162 4.162 21 C -0.021 4.021 22 N -0.362 5.362 23 C 0.389 3.611 24 N -0.421 5.421 25 O -0.497 6.497 26 C 0.000 4.000 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.200 0.800 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.095 0.905 44 H 0.244 0.756 45 H 0.250 0.750 46 H 0.073 0.927 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.343 -17.341 17.070 24.718 hybrid contribution 0.533 0.698 -1.122 1.425 sum 4.875 -16.643 15.948 23.561 Atomic orbital electron populations 1.21783 0.78266 1.03905 1.02236 1.47981 1.07886 1.06090 1.72230 1.21658 0.98175 0.84685 0.95971 1.22090 0.99825 0.97278 0.97773 1.20682 0.96960 0.93191 0.86111 1.42448 1.59014 1.32154 1.04581 1.19572 1.20942 1.02797 0.92850 0.91221 1.25534 1.03058 1.03044 0.95636 1.69832 1.49597 1.43738 0.99476 0.85136 0.77975 0.79342 0.77343 1.21774 1.21959 1.19266 1.20831 0.90370 0.82979 0.75163 1.90650 1.71014 1.32308 1.51068 1.21688 0.90220 1.01749 0.99788 0.87412 1.21347 0.96613 0.92907 1.02613 1.21912 0.93513 1.03805 0.96976 1.22007 0.99274 0.83469 0.97302 1.47156 1.05249 1.11538 1.72274 1.16303 0.82921 0.83782 0.78055 1.42918 1.04132 1.14870 1.80185 1.91141 1.75278 1.26156 1.57165 1.21614 0.79511 1.03739 0.95183 0.93137 0.90880 0.88658 0.89252 0.87604 0.92877 0.91958 0.96077 0.95382 0.79990 0.94255 0.90817 0.91772 0.90907 0.87389 0.87436 0.90512 0.75633 0.75048 0.92706 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.69 10.48 127.77 1.34 3.03 16 2 N -0.61 -14.95 2.87 -846.75 -2.43 -17.39 16 3 C 0.12 2.91 4.94 86.38 0.43 3.34 16 4 C -0.13 -4.44 4.79 30.59 0.15 -4.29 16 5 C 0.16 6.80 6.26 86.38 0.54 7.34 16 6 N -0.74 -41.09 5.60 -343.44 -1.92 -43.01 16 7 C -0.23 -13.88 9.99 84.03 0.84 -13.04 16 8 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 9 C -0.08 -5.00 5.50 84.86 0.47 -4.53 16 10 N -0.97 -63.34 13.06 21.65 0.28 -63.06 16 11 Si 0.97 48.98 29.55 68.60 2.03 51.01 16 12 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 13 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 14 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 15 C 0.52 13.82 6.91 87.66 0.61 14.43 16 16 O -0.57 -18.30 15.59 -3.02 -0.05 -18.34 16 17 C -0.11 -2.49 1.82 -11.46 -0.02 -2.51 16 18 H 0.11 2.19 6.86 -2.39 -0.02 2.17 16 19 C -0.10 -1.68 4.54 30.62 0.14 -1.55 16 20 C -0.12 -1.37 6.08 30.67 0.19 -1.18 16 21 C 0.10 1.30 6.35 86.36 0.55 1.85 16 22 N -0.62 -14.43 2.97 -836.90 -2.49 -16.91 16 23 C 0.69 20.03 8.57 179.05 1.53 21.57 16 24 N -0.85 -15.79 8.74 -184.75 -1.61 -17.41 16 25 O -0.62 -26.05 15.40 -3.97 -0.06 -26.11 16 26 C 0.12 3.36 5.13 86.36 0.44 3.81 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.58 7.38 -2.38 -0.02 1.57 16 29 H 0.09 1.50 8.01 -2.38 -0.02 1.48 16 30 H 0.09 2.15 5.45 -2.38 -0.01 2.14 16 31 H 0.11 2.13 8.01 -2.38 -0.02 2.11 16 32 H 0.05 1.99 5.82 -2.39 -0.01 1.98 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.03 1.30 6.91 -2.39 -0.02 1.29 16 36 H 0.37 21.86 7.67 -92.71 -0.71 21.15 16 37 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.28 7.99 -2.38 -0.02 1.26 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.11 0.74 5.74 -2.39 -0.01 0.73 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.41 4.16 6.41 -92.71 -0.59 3.56 16 45 H 0.42 7.65 8.93 -92.71 -0.83 6.82 16 46 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 47 H 0.10 3.25 2.61 -2.39 -0.01 3.24 16 Total: -1.00 -84.80 365.55 -0.18 -84.98 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: -1.12 Total: 37.98 kcal Atomic # 6 Polarization: 21.07 SS G_CDS: 7.20 Total: 28.27 kcal Atomic # 7 Polarization: -149.60 SS G_CDS: -8.18 Total: -157.78 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -0.11 Total: -44.45 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.03 Total: 51.01 kcal Total: -84.80 -0.18 -84.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498577643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.310 kcal (2) G-P(sol) polarization free energy of solvation -84.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds