Wall clock time and date at job start Fri Apr 10 2020 18:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48505 * 109.46661 * 274.06040 * 3 2 1 5 5 H 1.48499 * 109.47256 * 34.05979 * 3 2 1 6 6 H 1.48501 * 109.47156 * 154.06439 * 3 2 1 7 7 C 1.38813 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99949 * 197.53089 * 7 2 1 9 9 N 1.36945 * 119.99634 * 17.52722 * 7 2 1 10 10 C 1.46921 * 120.62851 * 207.99475 * 9 7 2 11 11 C 1.53193 * 108.77991 * 233.63373 * 10 9 7 12 12 C 1.53041 * 109.31086 * 305.36838 * 11 10 9 13 13 C 1.53001 * 109.45824 * 181.38060 * 12 11 10 14 14 N 1.46496 * 109.46752 * 174.97176 * 13 12 11 15 15 C 1.34779 * 120.00126 * 180.02562 * 14 13 12 16 16 O 1.21288 * 119.99552 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00579 * 179.97438 * 15 14 13 18 18 H 1.09004 * 109.46703 * 40.00171 * 17 15 14 19 19 N 1.46904 * 109.47324 * 160.00109 * 17 15 14 20 20 C 1.53000 * 109.47271 * 280.00054 * 17 15 14 21 21 C 1.52998 * 109.47113 * 174.99395 * 20 17 15 22 22 C 1.50704 * 109.47190 * 180.02562 * 21 20 17 23 23 N 1.34772 * 119.99796 * 180.02562 * 22 21 20 24 24 O 1.21281 * 119.99727 * 0.02562 * 22 21 20 25 25 C 1.53039 * 109.52726 * 61.36904 * 12 11 10 26 26 C 1.46925 * 120.63295 * 28.02551 * 9 7 2 27 27 H 0.97004 * 119.99797 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.58802 * 113.84515 * 10 9 7 29 29 H 1.09003 * 109.70902 * 353.49622 * 10 9 7 30 30 H 1.09003 * 109.49840 * 185.41381 * 11 10 9 31 31 H 1.09000 * 109.49154 * 65.31686 * 11 10 9 32 32 H 1.09003 * 109.45925 * 301.35628 * 12 11 10 33 33 H 1.09001 * 109.46791 * 54.97336 * 13 12 11 34 34 H 1.08991 * 109.47348 * 294.97421 * 13 12 11 35 35 H 0.97000 * 120.00840 * 0.02562 * 14 13 12 36 36 H 1.00902 * 110.99735 * 296.04811 * 19 17 15 37 37 H 1.00898 * 110.99587 * 60.00007 * 19 17 15 38 38 H 1.08993 * 109.47580 * 294.99884 * 20 17 15 39 39 H 1.09001 * 109.47099 * 55.00076 * 20 17 15 40 40 H 1.08995 * 109.47800 * 300.00611 * 21 20 17 41 41 H 1.09004 * 109.47083 * 60.00420 * 21 20 17 42 42 H 0.96997 * 120.00734 * 0.02562 * 23 22 21 43 43 H 0.97003 * 119.99555 * 180.02562 * 23 22 21 44 44 H 1.09006 * 109.49857 * 58.57555 * 25 12 11 45 45 H 1.09002 * 109.50109 * 178.67237 * 25 12 11 46 46 H 1.08996 * 109.58431 * 246.15337 * 26 9 7 47 47 H 1.09004 * 109.58607 * 6.43330 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4118 2.0959 -1.3966 5 1 1.4933 2.6264 0.7841 6 1 3.5881 1.4168 0.6123 7 6 2.0102 -1.2022 0.0005 8 1 3.0526 -1.2238 0.2823 9 7 1.3731 -2.3607 -0.3561 10 6 1.8144 -3.6542 0.1832 11 6 2.0773 -4.6112 -0.9838 12 6 0.8282 -4.6906 -1.8645 13 6 1.0751 -5.6720 -3.0120 14 7 -0.1579 -5.8396 -3.7850 15 6 -0.1782 -6.6640 -4.8511 16 8 0.8244 -7.2675 -5.1700 17 6 -1.4467 -6.8368 -5.6460 18 1 -1.9445 -5.8727 -5.7499 19 7 -1.1220 -7.3663 -6.9773 20 6 -2.3739 -7.8142 -4.9208 21 6 -3.7103 -7.8943 -5.6614 22 6 -4.6239 -8.8564 -4.9467 23 7 -5.8633 -9.0884 -5.4224 24 8 -4.2436 -9.4220 -3.9435 25 6 0.5167 -3.3056 -2.4363 26 6 0.2358 -2.3339 -1.2859 27 1 -0.4850 0.8401 -0.0004 28 1 1.0366 -4.0666 0.8259 29 1 2.7302 -3.5193 0.7586 30 1 2.3124 -5.6023 -0.5956 31 1 2.9161 -4.2429 -1.5744 32 1 -0.0160 -5.0351 -1.2672 33 1 1.3832 -6.6355 -2.6059 34 1 1.8604 -5.2831 -3.6601 35 1 -0.9598 -5.3572 -3.5298 36 1 -0.5631 -6.7095 -7.5012 37 1 -0.6593 -8.2602 -6.9079 38 1 -1.9129 -8.8015 -4.8952 39 1 -2.5436 -7.4659 -3.9019 40 1 -4.1714 -6.9070 -5.6870 41 1 -3.5407 -8.2425 -6.6803 42 1 -6.1673 -8.6363 -6.2250 43 1 -6.4514 -9.7074 -4.9622 44 1 1.3704 -2.9497 -3.0131 45 1 -0.3591 -3.3673 -3.0823 46 1 -0.6708 -2.6387 -0.7630 47 1 0.1091 -1.3253 -1.6793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574241366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:48 Heat of formation + Delta-G solvation = -80.158454 kcal Electronic energy + Delta-G solvation = -26134.779965 eV Core-core repulsion = 22351.709764 eV Total energy + Delta-G solvation = -3783.070201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.24762 -39.60460 -37.93152 -35.74832 -34.97514 -33.98165 -32.91158 -31.57730 -30.70405 -29.87481 -27.73884 -26.22701 -24.14527 -22.85686 -22.20180 -21.03087 -20.60302 -20.27285 -19.12558 -17.88800 -17.24069 -17.09590 -16.73439 -16.48961 -15.86369 -15.60028 -15.00403 -14.84885 -14.33514 -14.27075 -13.97625 -13.64082 -13.53068 -13.51363 -13.10613 -12.86274 -12.42497 -12.37782 -12.30631 -11.88575 -11.59531 -11.41264 -11.29358 -11.00908 -10.74949 -10.54348 -10.47357 -10.25664 -10.22947 -10.18357 -10.03133 -9.92258 -9.61519 -9.47498 -9.02904 -9.01433 -8.48392 -6.68752 -5.80736 -3.22618 2.35792 2.47704 3.11087 3.30658 3.36401 3.43732 3.45044 4.16792 4.46223 4.48425 4.51932 4.73717 4.87459 5.03962 5.05937 5.12307 5.23481 5.34131 5.37565 5.40879 5.56821 5.71875 5.85033 5.86975 5.90664 6.03515 6.13044 6.27042 6.39281 6.42396 6.50601 6.54650 6.64770 6.65829 6.74561 6.80479 6.97242 6.97464 7.06263 7.33085 7.47131 7.62017 7.78575 7.94874 8.12527 8.43721 9.20099 9.83620 10.40362 11.27830 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.018285 B = 0.002503 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.923862 B =11185.649982 C =11662.483042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.146 3.854 11 C -0.125 4.125 12 C -0.091 4.091 13 C 0.122 3.878 14 N -0.718 5.718 15 C 0.478 3.522 16 O -0.551 6.551 17 C 0.073 3.927 18 H 0.105 0.895 19 N -0.820 5.820 20 C -0.091 4.091 21 C -0.133 4.133 22 C 0.513 3.487 23 N -0.860 5.860 24 O -0.544 6.544 25 C -0.134 4.134 26 C 0.171 3.829 27 H 0.253 0.747 28 H 0.017 0.983 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.402 0.598 36 H 0.346 0.654 37 H 0.350 0.650 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.402 0.598 43 H 0.399 0.601 44 H 0.056 0.944 45 H 0.045 0.955 46 H 0.017 0.983 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.888 -14.902 -14.309 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.164 4.164 12 C -0.110 4.110 13 C -0.002 4.002 14 N -0.369 5.369 15 C 0.262 3.738 16 O -0.429 6.429 17 C -0.043 4.043 18 H 0.123 0.877 19 N -0.349 5.349 20 C -0.129 4.129 21 C -0.173 4.173 22 C 0.299 3.701 23 N -0.423 5.423 24 O -0.421 6.421 25 C -0.173 4.173 26 C 0.045 3.955 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.237 0.763 36 H 0.159 0.841 37 H 0.164 0.836 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.230 0.770 43 H 0.230 0.770 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.621 -15.446 -14.002 22.961 hybrid contribution 0.571 1.204 0.230 1.352 sum -9.050 -14.241 -13.772 21.781 Atomic orbital electron populations 1.70041 1.05249 1.25437 1.54046 1.25037 0.95290 0.98419 1.00980 0.86280 0.79207 0.83743 0.77593 1.21503 1.21784 1.20386 1.19215 0.92778 0.84918 1.41173 0.91681 1.44055 1.36467 1.01453 1.49559 1.20882 0.97651 0.86849 0.92675 1.21985 0.96621 0.99247 0.98590 1.21312 0.99412 0.95228 0.95023 1.21573 0.86130 0.99352 0.93131 1.46197 1.14928 1.45921 1.29834 1.21963 0.91544 0.78989 0.81304 1.90695 1.35875 1.47348 1.69012 1.21622 0.92847 1.00500 0.89319 0.87718 1.59189 1.53556 1.08913 1.13254 1.21251 0.93137 0.99880 0.98665 1.21574 0.94738 0.99491 1.01454 1.20891 0.82371 0.82363 0.84482 1.43923 1.16460 1.49544 1.32379 1.90776 1.74936 1.50744 1.25626 1.22246 0.99968 0.95290 0.99822 1.20760 0.88723 0.98226 0.87804 0.93687 0.96496 0.92728 0.92949 0.92112 0.91262 0.91999 0.91733 0.76286 0.84122 0.83579 0.90520 0.90172 0.88653 0.87359 0.77025 0.77026 0.92568 0.93659 0.96515 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.91 11.22 55.49 0.62 -25.29 16 2 C 0.00 0.03 4.90 -17.43 -0.09 -0.05 16 3 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.60 2.99 -172.32 -0.52 -15.12 16 10 C 0.15 3.01 6.51 -3.71 -0.02 2.99 16 11 C -0.12 -2.10 5.36 -26.61 -0.14 -2.24 16 12 C -0.09 -1.42 2.19 -90.58 -0.20 -1.62 16 13 C 0.12 1.72 5.06 -4.04 -0.02 1.70 16 14 N -0.72 -8.66 5.27 -60.30 -0.32 -8.98 16 15 C 0.48 5.88 7.07 -10.99 -0.08 5.80 16 16 O -0.55 -8.78 16.25 5.55 0.09 -8.69 16 17 C 0.07 0.62 3.15 -68.87 -0.22 0.41 16 18 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 19 N -0.82 -6.50 8.44 -5.65 -0.05 -6.55 16 20 C -0.09 -0.79 4.13 -26.73 -0.11 -0.90 16 21 C -0.13 -0.84 5.59 -27.88 -0.16 -0.99 16 22 C 0.51 4.36 8.10 -10.99 -0.09 4.27 16 23 N -0.86 -4.02 8.87 31.22 0.28 -3.75 16 24 O -0.54 -7.33 16.82 5.56 0.09 -7.24 16 25 C -0.13 -2.37 5.25 -26.61 -0.14 -2.51 16 26 C 0.17 3.92 5.31 -3.71 -0.02 3.90 16 27 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 4.15 7.65 -40.82 -0.31 3.83 16 36 H 0.35 2.68 9.06 -39.29 -0.36 2.32 16 37 H 0.35 3.08 8.58 -39.29 -0.34 2.75 16 38 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.11 0.58 7.75 -51.93 -0.40 0.18 16 42 H 0.40 0.64 8.83 -40.82 -0.36 0.28 16 43 H 0.40 1.69 8.93 -40.82 -0.36 1.33 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.04 0.69 7.15 -51.93 -0.37 0.32 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -34.53 378.75 -8.39 -42.92 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.85 Total: 6.68 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -1.42 Total: 3.75 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.02 Total: -59.68 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.18 Total: -15.93 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.53 -8.39 -42.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.238 kcal (2) G-P(sol) polarization free energy of solvation -34.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds