Wall clock time and date at job start Fri Apr 10 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48505 * 109.46661 * 274.06040 * 3 2 1 5 5 H 1.48499 * 109.47256 * 34.05979 * 3 2 1 6 6 H 1.48501 * 109.47156 * 154.06439 * 3 2 1 7 7 C 1.38813 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99949 * 197.53089 * 7 2 1 9 9 N 1.36945 * 119.99634 * 17.52722 * 7 2 1 10 10 C 1.46921 * 120.62851 * 207.99475 * 9 7 2 11 11 C 1.53193 * 108.77991 * 233.63373 * 10 9 7 12 12 C 1.53041 * 109.31086 * 305.36838 * 11 10 9 13 13 C 1.53001 * 109.45824 * 181.38060 * 12 11 10 14 14 N 1.46496 * 109.46752 * 174.97176 * 13 12 11 15 15 C 1.34779 * 120.00126 * 180.02562 * 14 13 12 16 16 O 1.21288 * 119.99552 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00579 * 179.97438 * 15 14 13 18 18 H 1.09004 * 109.46703 * 40.00171 * 17 15 14 19 19 N 1.46904 * 109.47324 * 160.00109 * 17 15 14 20 20 C 1.53000 * 109.47271 * 280.00054 * 17 15 14 21 21 C 1.52998 * 109.47113 * 174.99395 * 20 17 15 22 22 C 1.50704 * 109.47190 * 180.02562 * 21 20 17 23 23 N 1.34772 * 119.99796 * 180.02562 * 22 21 20 24 24 O 1.21281 * 119.99727 * 0.02562 * 22 21 20 25 25 C 1.53039 * 109.52726 * 61.36904 * 12 11 10 26 26 C 1.46925 * 120.63295 * 28.02551 * 9 7 2 27 27 H 0.97004 * 119.99797 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.58802 * 113.84515 * 10 9 7 29 29 H 1.09003 * 109.70902 * 353.49622 * 10 9 7 30 30 H 1.09003 * 109.49840 * 185.41381 * 11 10 9 31 31 H 1.09000 * 109.49154 * 65.31686 * 11 10 9 32 32 H 1.09003 * 109.45925 * 301.35628 * 12 11 10 33 33 H 1.09001 * 109.46791 * 54.97336 * 13 12 11 34 34 H 1.08991 * 109.47348 * 294.97421 * 13 12 11 35 35 H 0.97000 * 120.00840 * 0.02562 * 14 13 12 36 36 H 1.00902 * 110.99735 * 296.04811 * 19 17 15 37 37 H 1.00898 * 110.99587 * 60.00007 * 19 17 15 38 38 H 1.08993 * 109.47580 * 294.99884 * 20 17 15 39 39 H 1.09001 * 109.47099 * 55.00076 * 20 17 15 40 40 H 1.08995 * 109.47800 * 300.00611 * 21 20 17 41 41 H 1.09004 * 109.47083 * 60.00420 * 21 20 17 42 42 H 0.96997 * 120.00734 * 0.02562 * 23 22 21 43 43 H 0.97003 * 119.99555 * 180.02562 * 23 22 21 44 44 H 1.09006 * 109.49857 * 58.57555 * 25 12 11 45 45 H 1.09002 * 109.50109 * 178.67237 * 25 12 11 46 46 H 1.08996 * 109.58431 * 246.15337 * 26 9 7 47 47 H 1.09004 * 109.58607 * 6.43330 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4118 2.0959 -1.3966 5 1 1.4933 2.6264 0.7841 6 1 3.5881 1.4168 0.6123 7 6 2.0102 -1.2022 0.0005 8 1 3.0526 -1.2238 0.2823 9 7 1.3731 -2.3607 -0.3561 10 6 1.8144 -3.6542 0.1832 11 6 2.0773 -4.6112 -0.9838 12 6 0.8282 -4.6906 -1.8645 13 6 1.0751 -5.6720 -3.0120 14 7 -0.1579 -5.8396 -3.7850 15 6 -0.1782 -6.6640 -4.8511 16 8 0.8244 -7.2675 -5.1700 17 6 -1.4467 -6.8368 -5.6460 18 1 -1.9445 -5.8727 -5.7499 19 7 -1.1220 -7.3663 -6.9773 20 6 -2.3739 -7.8142 -4.9208 21 6 -3.7103 -7.8943 -5.6614 22 6 -4.6239 -8.8564 -4.9467 23 7 -5.8633 -9.0884 -5.4224 24 8 -4.2436 -9.4220 -3.9435 25 6 0.5167 -3.3056 -2.4363 26 6 0.2358 -2.3339 -1.2859 27 1 -0.4850 0.8401 -0.0004 28 1 1.0366 -4.0666 0.8259 29 1 2.7302 -3.5193 0.7586 30 1 2.3124 -5.6023 -0.5956 31 1 2.9161 -4.2429 -1.5744 32 1 -0.0160 -5.0351 -1.2672 33 1 1.3832 -6.6355 -2.6059 34 1 1.8604 -5.2831 -3.6601 35 1 -0.9598 -5.3572 -3.5298 36 1 -0.5631 -6.7095 -7.5012 37 1 -0.6593 -8.2602 -6.9079 38 1 -1.9129 -8.8015 -4.8952 39 1 -2.5436 -7.4659 -3.9019 40 1 -4.1714 -6.9070 -5.6870 41 1 -3.5407 -8.2425 -6.6803 42 1 -6.1673 -8.6363 -6.2250 43 1 -6.4514 -9.7074 -4.9622 44 1 1.3704 -2.9497 -3.0131 45 1 -0.3591 -3.3673 -3.0823 46 1 -0.6708 -2.6387 -0.7630 47 1 0.1091 -1.3253 -1.6793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:47 Heat of formation + Delta-G solvation = -109.382873 kcal Electronic energy + Delta-G solvation = -26136.047231 eV Core-core repulsion = 22351.709764 eV Total energy + Delta-G solvation = -3784.337467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.17164 -40.35680 -39.41626 -36.67540 -36.24412 -34.57416 -34.52541 -32.42111 -32.17538 -31.52818 -28.94005 -27.36985 -25.70140 -23.98647 -23.64495 -22.48066 -21.33655 -21.14224 -20.61897 -18.81898 -18.49719 -17.85456 -17.77245 -17.25930 -16.84028 -16.74573 -16.37249 -16.00069 -15.68467 -15.32989 -15.19130 -15.06330 -14.92323 -14.65898 -14.32517 -14.02718 -13.82739 -13.51677 -13.42621 -13.08058 -12.96443 -12.82714 -12.58647 -12.32723 -12.26191 -11.96564 -11.92706 -11.85243 -11.62965 -11.40913 -11.17207 -11.13685 -10.93635 -10.57678 -10.53795 -10.09406 -9.79479 -8.67524 -7.87837 -5.32405 1.45909 1.47357 1.53475 1.56334 1.74013 2.21502 2.50924 2.75487 3.26075 3.46823 3.70478 3.77217 3.84613 3.90510 3.95180 4.04056 4.09416 4.23497 4.50599 4.51236 4.52312 4.54105 4.67529 4.72549 4.76908 4.85287 4.91769 5.02842 5.11526 5.16229 5.23033 5.23977 5.28033 5.40125 5.41515 5.55250 5.66200 5.79100 5.96517 5.97563 6.39067 6.39782 6.53793 6.55503 7.15845 7.18200 7.44358 7.87560 8.38351 9.18253 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.018285 B = 0.002503 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.923862 B =11185.649982 C =11662.483042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.050 4.050 3 Si 0.964 3.036 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.263 4.263 8 H 0.063 0.937 9 N -0.612 5.612 10 C 0.141 3.859 11 C -0.116 4.116 12 C -0.079 4.079 13 C 0.134 3.866 14 N -0.713 5.713 15 C 0.475 3.525 16 O -0.590 6.590 17 C 0.085 3.915 18 H 0.133 0.867 19 N -0.810 5.810 20 C -0.087 4.087 21 C -0.123 4.123 22 C 0.508 3.492 23 N -0.840 5.840 24 O -0.603 6.603 25 C -0.118 4.118 26 C 0.176 3.824 27 H 0.250 0.750 28 H 0.015 0.985 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.413 0.587 36 H 0.349 0.651 37 H 0.346 0.654 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.419 0.581 43 H 0.403 0.597 44 H 0.045 0.955 45 H 0.074 0.926 46 H -0.001 1.001 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.586 -15.280 -15.992 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.246 4.246 3 Si 0.793 3.207 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.393 4.393 8 H 0.081 0.919 9 N -0.336 5.336 10 C 0.015 3.985 11 C -0.155 4.155 12 C -0.098 4.098 13 C 0.010 3.990 14 N -0.365 5.365 15 C 0.260 3.740 16 O -0.471 6.471 17 C -0.030 4.030 18 H 0.150 0.850 19 N -0.339 5.339 20 C -0.126 4.126 21 C -0.162 4.162 22 C 0.294 3.706 23 N -0.404 5.404 24 O -0.485 6.485 25 C -0.157 4.157 26 C 0.050 3.950 27 H 0.059 0.941 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.250 0.750 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.251 0.749 43 H 0.234 0.766 44 H 0.064 0.936 45 H 0.092 0.908 46 H 0.017 0.983 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.364 -15.826 -15.732 24.604 hybrid contribution 0.749 1.275 0.772 1.669 sum -9.614 -14.550 -14.960 22.977 Atomic orbital electron populations 1.70180 1.06513 1.25793 1.55401 1.25757 0.96072 1.01353 1.01369 0.85296 0.78210 0.79801 0.77410 1.21251 1.22085 1.19502 1.19507 0.92947 0.86272 1.40577 0.91933 1.44350 1.36686 1.02168 1.50417 1.21034 0.97246 0.86010 0.94177 1.21858 0.96969 0.99481 0.97209 1.21160 0.98994 0.94259 0.95388 1.21272 0.86817 0.98536 0.92389 1.46151 1.14630 1.46042 1.29656 1.22726 0.92320 0.77909 0.81015 1.90679 1.37632 1.48734 1.70008 1.21668 0.90950 1.01717 0.88706 0.84959 1.59215 1.53336 1.08718 1.12601 1.21169 0.94310 0.98439 0.98681 1.21550 0.93050 1.00457 1.01173 1.21302 0.83351 0.82095 0.83823 1.43790 1.15269 1.48787 1.32523 1.90756 1.76265 1.53135 1.28316 1.22024 1.00762 0.95008 0.97942 1.20607 0.87785 0.97690 0.88902 0.94090 0.96695 0.93015 0.90121 0.92681 0.90712 0.92005 0.92734 0.75040 0.83746 0.84115 0.92972 0.91111 0.85793 0.85923 0.74932 0.76627 0.93638 0.90781 0.98268 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.65 11.22 21.65 0.24 -54.41 16 2 C -0.05 -2.79 4.90 84.86 0.42 -2.37 16 3 Si 0.96 44.82 29.59 68.60 2.03 46.85 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.26 -14.49 9.58 84.03 0.81 -13.69 16 8 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 9 N -0.61 -30.49 2.99 -699.10 -2.09 -32.58 16 10 C 0.14 5.76 6.51 86.36 0.56 6.32 16 11 C -0.12 -3.73 5.36 30.67 0.16 -3.56 16 12 C -0.08 -2.33 2.19 -10.77 -0.02 -2.36 16 13 C 0.13 3.54 5.06 86.38 0.44 3.97 16 14 N -0.71 -15.71 5.27 -463.07 -2.44 -18.15 16 15 C 0.47 10.86 7.07 87.65 0.62 11.48 16 16 O -0.59 -18.21 16.25 -3.05 -0.05 -18.26 16 17 C 0.09 1.25 3.15 44.17 0.14 1.39 16 18 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 19 N -0.81 -11.04 8.44 -171.80 -1.45 -12.49 16 20 C -0.09 -1.38 4.13 30.59 0.13 -1.25 16 21 C -0.12 -1.22 5.59 29.85 0.17 -1.05 16 22 C 0.51 7.87 8.10 87.66 0.71 8.58 16 23 N -0.84 -6.08 8.87 -173.53 -1.54 -7.62 16 24 O -0.60 -16.25 16.82 -3.03 -0.05 -16.30 16 25 C -0.12 -4.06 5.25 30.67 0.16 -3.90 16 26 C 0.18 8.15 5.31 86.36 0.46 8.61 16 27 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 28 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 2.10 7.94 -2.39 -0.02 2.08 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.41 7.38 7.65 -92.71 -0.71 6.68 16 36 H 0.35 4.59 9.06 -89.69 -0.81 3.78 16 37 H 0.35 5.60 8.58 -89.70 -0.77 4.83 16 38 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 39 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 40 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.12 0.92 7.75 -2.39 -0.02 0.90 16 42 H 0.42 0.07 8.83 -92.71 -0.82 -0.75 16 43 H 0.40 2.75 8.93 -92.71 -0.83 1.93 16 44 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.07 2.10 7.15 -2.39 -0.02 2.08 16 46 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.05 2.75 6.06 -2.38 -0.01 2.74 16 Total: -1.00 -77.28 378.75 -3.52 -80.80 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -2.91 Total: 19.99 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 4.74 Total: 12.17 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -7.28 Total: -125.25 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.10 Total: -34.56 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -77.28 -3.52 -80.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.587 kcal (2) G-P(sol) polarization free energy of solvation -77.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds