Wall clock time and date at job start Fri Apr 10 2020 18:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.50373 * 2 1 4 4 C 1.53111 * 109.50529 * 120.08167 * 2 1 3 5 5 C 1.53121 * 109.16207 * 177.59260 * 4 2 1 6 6 C 1.53030 * 109.27856 * 302.34661 * 5 4 2 7 7 H 1.09003 * 109.46476 * 299.17261 * 6 5 4 8 8 C 1.53006 * 109.46265 * 179.19503 * 6 5 4 9 9 N 1.46504 * 109.46883 * 185.00175 * 8 6 5 10 10 C 1.34775 * 119.99531 * 179.97438 * 9 8 6 11 11 O 1.21589 * 120.00042 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00068 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00474 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47456 * 180.02562 * 13 12 10 15 15 O 1.21300 * 119.99717 * 359.97438 * 14 13 12 16 16 N 1.34768 * 120.00105 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00129 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99764 * 359.97438 * 17 16 14 19 19 C 1.38954 * 120.00029 * 179.97438 * 17 16 14 20 20 N 1.31404 * 120.00244 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99878 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46852 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47112 * 119.99360 * 21 19 17 24 24 H 1.48494 * 109.46689 * 239.99958 * 21 19 17 25 25 N 1.46847 * 109.52502 * 59.17741 * 6 5 4 26 26 C 1.46846 * 111.19531 * 298.25790 * 25 6 5 27 27 H 1.09004 * 109.46700 * 299.91795 * 1 2 3 28 28 H 1.08998 * 109.47303 * 59.92250 * 1 2 3 29 29 H 1.09003 * 109.46932 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47400 * 180.08151 * 3 2 1 31 31 H 1.09007 * 109.47299 * 300.08297 * 3 2 1 32 32 H 1.09001 * 109.46903 * 60.08204 * 3 2 1 33 33 H 1.08997 * 109.52657 * 57.69059 * 4 2 1 34 34 H 1.09004 * 109.57867 * 297.53279 * 4 2 1 35 35 H 1.09002 * 109.50647 * 182.40180 * 5 4 2 36 36 H 1.08999 * 109.53451 * 62.31048 * 5 4 2 37 37 H 1.09001 * 109.47002 * 304.99672 * 8 6 5 38 38 H 1.08993 * 109.46955 * 65.00109 * 8 6 5 39 39 H 0.96992 * 119.99966 * 359.97438 * 9 8 6 40 40 H 0.96998 * 119.99765 * 0.02562 * 12 10 9 41 41 H 1.08999 * 109.47307 * 300.01227 * 13 12 10 42 42 H 1.09007 * 109.46632 * 60.00564 * 13 12 10 43 43 H 0.97003 * 120.00293 * 359.97438 * 16 14 13 44 44 H 0.96995 * 120.00362 * 180.02562 * 20 19 17 45 45 H 1.00902 * 110.99645 * 62.35508 * 25 6 5 46 46 H 1.08997 * 109.46558 * 301.72368 * 26 25 6 47 47 H 1.09005 * 109.45937 * 181.75964 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0412 -0.7234 1.2489 5 6 3.5712 -0.7716 1.2108 6 6 4.0229 -1.4730 -0.0721 7 1 3.6373 -2.4925 -0.0837 8 6 5.5517 -1.5057 -0.1241 9 7 5.9848 -2.0689 -1.4053 10 6 7.2990 -2.1953 -1.6759 11 8 8.1252 -1.8423 -0.8566 12 7 7.6976 -2.7139 -2.8543 13 6 9.1261 -2.8508 -3.1489 14 6 9.3011 -3.4518 -4.5197 15 8 8.3282 -3.7381 -5.1851 16 7 10.5386 -3.6721 -5.0059 17 6 10.6978 -4.2184 -6.2532 18 1 9.8316 -4.4726 -6.8460 19 6 11.9737 -4.4450 -6.7547 20 7 13.0277 -4.1353 -6.0337 21 14 12.1907 -5.1901 -8.4540 22 1 10.8575 -5.4467 -9.0558 23 1 12.9495 -4.2473 -9.3147 24 1 12.9372 -6.4688 -8.3421 25 7 3.5092 -0.7425 -1.2378 26 6 2.0409 -0.7238 -1.2478 27 1 -0.3633 0.5126 0.8908 28 1 -0.3634 0.5150 -0.8893 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1308 1.4416 -0.0015 31 1 1.6766 1.9567 -0.8893 32 1 1.6790 1.9558 0.8907 33 1 1.6453 -1.7387 1.2695 34 1 1.7157 -0.1874 2.1404 35 1 3.9396 -1.3228 2.0760 36 1 3.9684 0.2433 1.2300 37 1 5.9404 -0.4924 -0.0227 38 1 5.9298 -2.1231 0.6907 39 1 5.3257 -2.3508 -2.0586 40 1 7.0385 -2.9958 -3.5078 41 1 9.5988 -1.8690 -3.1198 42 1 9.5898 -3.4994 -2.4055 43 1 11.3167 -3.4434 -4.4737 44 1 13.9184 -4.2931 -6.3840 45 1 3.8830 0.1942 -1.2710 46 1 1.6647 -1.7468 -1.2539 47 1 1.6904 -0.2030 -2.1389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576417418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:52 Heat of formation + Delta-G solvation = -86.149873 kcal Electronic energy + Delta-G solvation = -25723.934969 eV Core-core repulsion = 21940.604961 eV Total energy + Delta-G solvation = -3783.330008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.39855 -39.53329 -38.13034 -35.69367 -34.32654 -33.56094 -33.18028 -31.98709 -31.32474 -28.69818 -27.82055 -27.06074 -24.95252 -24.32997 -23.40989 -21.45743 -20.51120 -19.51873 -19.21908 -18.28260 -17.89502 -16.35508 -15.94427 -15.75028 -15.55681 -15.34504 -15.08020 -14.68289 -14.59020 -14.35559 -14.20538 -14.00217 -13.63805 -13.51110 -13.32478 -12.88773 -12.56366 -12.42066 -12.22407 -12.11500 -11.96103 -11.81292 -11.71711 -11.60630 -11.59351 -11.35438 -11.11104 -10.79219 -10.67836 -10.37899 -10.28928 -9.93230 -9.60551 -9.02455 -8.66895 -8.56701 -8.46088 -8.05483 -6.47457 -3.89224 2.94387 3.13188 3.25004 3.32053 3.52535 3.80633 3.85554 4.12704 4.22429 4.25074 4.37309 4.51207 4.69139 4.72141 4.85695 4.97347 5.01347 5.03844 5.18042 5.19882 5.21454 5.28774 5.36078 5.40144 5.52212 5.54700 5.56641 5.60729 5.63861 5.76035 5.81741 5.84637 5.97033 5.99551 6.07994 6.14480 6.59271 6.72979 6.86725 7.05030 7.28448 7.50109 7.97309 8.39314 8.50170 8.93076 9.09144 9.44552 9.92658 10.69634 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.032976 B = 0.001998 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.886407 B =14009.426898 C =14560.282612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C -0.145 4.145 4 C -0.106 4.106 5 C -0.152 4.152 6 C 0.075 3.925 7 H 0.088 0.912 8 C 0.149 3.851 9 N -0.738 5.738 10 C 0.703 3.297 11 O -0.604 6.604 12 N -0.725 5.725 13 C 0.129 3.871 14 C 0.430 3.570 15 O -0.597 6.597 16 N -0.551 5.551 17 C -0.303 4.303 18 H 0.106 0.894 19 C 0.024 3.976 20 N -0.895 5.895 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.281 1.281 25 N -0.678 5.678 26 C 0.069 3.931 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.404 0.596 40 H 0.407 0.593 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.396 0.604 44 H 0.273 0.727 45 H 0.344 0.656 46 H 0.073 0.927 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.138 8.606 14.605 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.144 4.144 5 C -0.191 4.191 6 C -0.035 4.035 7 H 0.106 0.894 8 C 0.024 3.976 9 N -0.395 5.395 10 C 0.403 3.597 11 O -0.484 6.484 12 N -0.382 5.382 13 C 0.001 3.999 14 C 0.216 3.784 15 O -0.483 6.483 16 N -0.186 5.186 17 C -0.433 4.433 18 H 0.123 0.877 19 C -0.178 4.178 20 N -0.536 5.536 21 Si 0.759 3.241 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.207 1.207 25 N -0.308 5.308 26 C -0.061 4.061 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.239 0.761 40 H 0.244 0.756 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.230 0.770 44 H 0.083 0.917 45 H 0.163 0.837 46 H 0.092 0.908 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.721 8.157 14.402 27.309 hybrid contribution -0.085 0.216 -0.287 0.369 sum -21.806 8.373 14.116 27.292 Atomic orbital electron populations 1.21791 0.94217 1.01808 1.01785 1.21301 0.96171 0.96129 0.97106 1.21923 1.01089 0.95255 1.01958 1.21595 0.94998 1.00517 0.97247 1.22233 0.96292 1.01674 0.98921 1.21858 0.94014 0.98890 0.88768 0.89403 1.21121 0.91931 0.98920 0.85629 1.44850 1.05503 1.69058 1.20085 1.15887 0.82709 0.78826 0.82327 1.90891 1.52106 1.57072 1.48348 1.44751 1.08476 1.67233 1.17764 1.20758 0.81282 1.01698 0.96198 1.19799 0.84538 0.85842 0.88258 1.90494 1.38981 1.58032 1.60838 1.41795 1.05896 1.54038 1.16872 1.19778 0.93773 1.37339 0.92379 0.87651 1.25322 0.94866 0.97547 1.00092 1.69621 0.98553 1.47415 1.37975 0.85761 0.78620 0.78446 0.81277 1.19156 1.20659 1.20664 1.60645 1.07194 1.22046 1.40880 1.22086 0.87378 1.00567 0.96049 0.92795 0.92507 0.92594 0.92484 0.92472 0.92598 0.91788 0.91872 0.90983 0.91275 0.92053 0.91340 0.76105 0.75591 0.90128 0.90123 0.77030 0.91695 0.83690 0.90827 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 8.48 37.16 0.32 -0.38 16 2 C -0.11 -0.58 0.77 -154.43 -0.12 -0.70 16 3 C -0.14 -0.81 7.87 37.16 0.29 -0.51 16 4 C -0.11 -0.60 4.79 -26.61 -0.13 -0.73 16 5 C -0.15 -0.94 5.00 -26.65 -0.13 -1.07 16 6 C 0.08 0.56 2.58 -67.72 -0.17 0.38 16 7 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 8 C 0.15 1.53 5.32 -4.04 -0.02 1.51 16 9 N -0.74 -9.22 5.39 -65.22 -0.35 -9.57 16 10 C 0.70 11.85 8.57 -86.92 -0.74 11.11 16 11 O -0.60 -12.18 16.34 5.29 0.09 -12.10 16 12 N -0.72 -12.70 5.53 -66.41 -0.37 -13.06 16 13 C 0.13 2.49 6.15 -5.19 -0.03 2.45 16 14 C 0.43 10.08 7.85 -10.99 -0.09 9.99 16 15 O -0.60 -15.54 15.24 5.54 0.08 -15.46 16 16 N -0.55 -13.89 5.29 -10.96 -0.06 -13.95 16 17 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 18 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 19 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 20 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 21 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 N -0.68 -5.02 5.87 -106.76 -0.63 -5.65 16 26 C 0.07 0.44 5.34 -3.83 -0.02 0.42 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.34 5.13 -51.93 -0.27 0.07 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.44 6.59 -51.93 -0.34 0.10 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.40 4.51 8.15 -40.82 -0.33 4.18 16 40 H 0.41 6.99 7.45 -40.82 -0.30 6.68 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.40 9.61 7.90 -40.82 -0.32 9.29 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 45 H 0.34 2.60 7.08 -39.29 -0.28 2.32 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -31.49 375.39 -8.67 -40.16 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -7.70 Total: 17.17 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: -1.09 Total: 14.53 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -0.68 Total: -65.69 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: 0.17 Total: -27.56 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.49 -8.67 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576417418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.991 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds