Wall clock time and date at job start Fri Apr 10 2020 18:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.50373 * 2 1 4 4 C 1.53111 * 109.50529 * 120.08167 * 2 1 3 5 5 C 1.53121 * 109.16207 * 177.59260 * 4 2 1 6 6 C 1.53030 * 109.27856 * 302.34661 * 5 4 2 7 7 H 1.09003 * 109.46476 * 299.17261 * 6 5 4 8 8 C 1.53006 * 109.46265 * 179.19503 * 6 5 4 9 9 N 1.46504 * 109.46883 * 185.00175 * 8 6 5 10 10 C 1.34775 * 119.99531 * 179.97438 * 9 8 6 11 11 O 1.21589 * 120.00042 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00068 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00474 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47456 * 180.02562 * 13 12 10 15 15 O 1.21300 * 119.99717 * 359.97438 * 14 13 12 16 16 N 1.34768 * 120.00105 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00129 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99764 * 359.97438 * 17 16 14 19 19 C 1.38954 * 120.00029 * 179.97438 * 17 16 14 20 20 N 1.31404 * 120.00244 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99878 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46852 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47112 * 119.99360 * 21 19 17 24 24 H 1.48494 * 109.46689 * 239.99958 * 21 19 17 25 25 N 1.46847 * 109.52502 * 59.17741 * 6 5 4 26 26 C 1.46846 * 111.19531 * 298.25790 * 25 6 5 27 27 H 1.09004 * 109.46700 * 299.91795 * 1 2 3 28 28 H 1.08998 * 109.47303 * 59.92250 * 1 2 3 29 29 H 1.09003 * 109.46932 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47400 * 180.08151 * 3 2 1 31 31 H 1.09007 * 109.47299 * 300.08297 * 3 2 1 32 32 H 1.09001 * 109.46903 * 60.08204 * 3 2 1 33 33 H 1.08997 * 109.52657 * 57.69059 * 4 2 1 34 34 H 1.09004 * 109.57867 * 297.53279 * 4 2 1 35 35 H 1.09002 * 109.50647 * 182.40180 * 5 4 2 36 36 H 1.08999 * 109.53451 * 62.31048 * 5 4 2 37 37 H 1.09001 * 109.47002 * 304.99672 * 8 6 5 38 38 H 1.08993 * 109.46955 * 65.00109 * 8 6 5 39 39 H 0.96992 * 119.99966 * 359.97438 * 9 8 6 40 40 H 0.96998 * 119.99765 * 0.02562 * 12 10 9 41 41 H 1.08999 * 109.47307 * 300.01227 * 13 12 10 42 42 H 1.09007 * 109.46632 * 60.00564 * 13 12 10 43 43 H 0.97003 * 120.00293 * 359.97438 * 16 14 13 44 44 H 0.96995 * 120.00362 * 180.02562 * 20 19 17 45 45 H 1.00902 * 110.99645 * 62.35508 * 25 6 5 46 46 H 1.08997 * 109.46558 * 301.72368 * 26 25 6 47 47 H 1.09005 * 109.45937 * 181.75964 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0412 -0.7234 1.2489 5 6 3.5712 -0.7716 1.2108 6 6 4.0229 -1.4730 -0.0721 7 1 3.6373 -2.4925 -0.0837 8 6 5.5517 -1.5057 -0.1241 9 7 5.9848 -2.0689 -1.4053 10 6 7.2990 -2.1953 -1.6759 11 8 8.1252 -1.8423 -0.8566 12 7 7.6976 -2.7139 -2.8543 13 6 9.1261 -2.8508 -3.1489 14 6 9.3011 -3.4518 -4.5197 15 8 8.3282 -3.7381 -5.1851 16 7 10.5386 -3.6721 -5.0059 17 6 10.6978 -4.2184 -6.2532 18 1 9.8316 -4.4726 -6.8460 19 6 11.9737 -4.4450 -6.7547 20 7 13.0277 -4.1353 -6.0337 21 14 12.1907 -5.1901 -8.4540 22 1 10.8575 -5.4467 -9.0558 23 1 12.9495 -4.2473 -9.3147 24 1 12.9372 -6.4688 -8.3421 25 7 3.5092 -0.7425 -1.2378 26 6 2.0409 -0.7238 -1.2478 27 1 -0.3633 0.5126 0.8908 28 1 -0.3634 0.5150 -0.8893 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1308 1.4416 -0.0015 31 1 1.6766 1.9567 -0.8893 32 1 1.6790 1.9558 0.8907 33 1 1.6453 -1.7387 1.2695 34 1 1.7157 -0.1874 2.1404 35 1 3.9396 -1.3228 2.0760 36 1 3.9684 0.2433 1.2300 37 1 5.9404 -0.4924 -0.0227 38 1 5.9298 -2.1231 0.6907 39 1 5.3257 -2.3508 -2.0586 40 1 7.0385 -2.9958 -3.5078 41 1 9.5988 -1.8690 -3.1198 42 1 9.5898 -3.4994 -2.4055 43 1 11.3167 -3.4434 -4.4737 44 1 13.9184 -4.2931 -6.3840 45 1 3.8830 0.1942 -1.2710 46 1 1.6647 -1.7468 -1.2539 47 1 1.6904 -0.2030 -2.1389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576417418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:52 Heat of formation + Delta-G solvation = -110.560353 kcal Electronic energy + Delta-G solvation = -25724.993487 eV Core-core repulsion = 21940.604961 eV Total energy + Delta-G solvation = -3784.388526 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27734 -40.66195 -39.91656 -36.59058 -36.16162 -35.20484 -34.06070 -33.34262 -32.53393 -29.81291 -28.33165 -28.24819 -26.37946 -25.35792 -24.11136 -22.12183 -21.81072 -21.33048 -20.09226 -19.73729 -19.43256 -17.52900 -17.38239 -16.96847 -16.47457 -16.42469 -16.28610 -15.90344 -15.85387 -15.55446 -15.34322 -15.09448 -14.81127 -14.62303 -14.20488 -13.91430 -13.69994 -13.53514 -13.38450 -13.12398 -12.89688 -12.86310 -12.69436 -12.42969 -12.41738 -12.35102 -12.14701 -12.10075 -11.87484 -11.56392 -11.38038 -11.28872 -11.16394 -10.53232 -10.36379 -10.08281 -9.71687 -9.22635 -8.49525 -5.99568 1.36407 1.43634 1.57368 1.69740 1.91859 2.19063 2.30309 3.07104 3.17691 3.24242 3.43163 3.70259 3.78641 3.90855 4.03960 4.12230 4.24360 4.28662 4.45874 4.46280 4.49574 4.53151 4.65161 4.70597 4.78892 4.81939 4.89373 4.95611 4.97389 5.06692 5.10248 5.14679 5.22985 5.36190 5.36696 5.40303 5.41312 5.49903 5.58267 5.93935 6.05073 6.11097 6.45306 6.50191 7.05322 7.12352 7.45355 7.61201 7.96730 8.67695 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.032976 B = 0.001998 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.886407 B =14009.426898 C =14560.282612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 C -0.143 4.143 4 C -0.103 4.103 5 C -0.147 4.147 6 C 0.087 3.913 7 H 0.090 0.910 8 C 0.148 3.852 9 N -0.720 5.720 10 C 0.702 3.298 11 O -0.637 6.637 12 N -0.725 5.725 13 C 0.143 3.857 14 C 0.434 3.566 15 O -0.624 6.624 16 N -0.560 5.560 17 C -0.336 4.336 18 H 0.086 0.914 19 C -0.012 4.012 20 N -0.917 5.917 21 Si 0.998 3.002 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.271 1.271 25 N -0.686 5.686 26 C 0.071 3.929 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.412 0.588 40 H 0.409 0.591 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.399 0.601 44 H 0.279 0.721 45 H 0.343 0.657 46 H 0.072 0.928 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.043 8.697 14.816 28.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.200 4.200 4 C -0.140 4.140 5 C -0.187 4.187 6 C -0.023 4.023 7 H 0.108 0.892 8 C 0.024 3.976 9 N -0.376 5.376 10 C 0.401 3.599 11 O -0.520 6.520 12 N -0.383 5.383 13 C 0.014 3.986 14 C 0.221 3.779 15 O -0.512 6.512 16 N -0.196 5.196 17 C -0.465 4.465 18 H 0.104 0.896 19 C -0.213 4.213 20 N -0.557 5.557 21 Si 0.821 3.179 22 H -0.194 1.194 23 H -0.196 1.196 24 H -0.197 1.197 25 N -0.316 5.316 26 C -0.059 4.059 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.249 0.751 40 H 0.247 0.753 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.233 0.767 44 H 0.089 0.911 45 H 0.162 0.838 46 H 0.091 0.909 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.667 8.257 14.635 28.216 hybrid contribution 0.140 0.219 -0.304 0.400 sum -22.527 8.476 14.331 28.013 Atomic orbital electron populations 1.21768 0.93683 1.01972 1.01967 1.21250 0.96532 0.95915 0.96577 1.21902 1.00782 0.95297 1.02057 1.21574 0.94347 1.00670 0.97458 1.22186 0.96792 1.01452 0.98236 1.21716 0.91803 0.99237 0.89559 0.89215 1.21277 0.93879 0.98231 0.84246 1.44800 1.04044 1.67841 1.20949 1.16002 0.83722 0.78538 0.81599 1.90869 1.53358 1.58549 1.49207 1.44680 1.07713 1.67644 1.18230 1.20562 0.82685 1.01884 0.93489 1.20432 0.83592 0.84518 0.89318 1.90471 1.39713 1.58867 1.62100 1.41839 1.06600 1.54543 1.16588 1.19777 0.93800 1.39378 0.93552 0.89576 1.26143 0.94155 0.97361 1.03619 1.69684 0.99008 1.47549 1.39425 0.84798 0.78381 0.77977 0.76730 1.19426 1.19650 1.19655 1.60640 1.07986 1.22046 1.40888 1.22078 0.86601 1.00635 0.96537 0.92562 0.92399 0.92443 0.92915 0.92482 0.92403 0.91677 0.91433 0.90602 0.91381 0.92636 0.91683 0.75091 0.75321 0.89198 0.89153 0.76702 0.91097 0.83777 0.90941 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.48 71.98 0.61 -0.53 16 2 C -0.10 -0.95 0.77 -52.13 -0.04 -0.99 16 3 C -0.14 -1.40 7.87 71.98 0.57 -0.83 16 4 C -0.10 -0.98 4.79 30.67 0.15 -0.84 16 5 C -0.15 -1.61 5.00 30.64 0.15 -1.45 16 6 C 0.09 1.18 2.58 44.94 0.12 1.29 16 7 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 8 C 0.15 2.89 5.32 86.38 0.46 3.35 16 9 N -0.72 -17.26 5.39 -478.52 -2.58 -19.84 16 10 C 0.70 23.12 8.57 179.06 1.53 24.65 16 11 O -0.64 -25.32 16.34 -4.00 -0.07 -25.39 16 12 N -0.73 -24.92 5.53 -482.29 -2.67 -27.59 16 13 C 0.14 5.42 6.15 85.63 0.53 5.94 16 14 C 0.43 20.45 7.85 87.66 0.69 21.14 16 15 O -0.62 -32.72 15.24 -3.09 -0.05 -32.77 16 16 N -0.56 -28.55 5.29 -306.98 -1.62 -30.17 16 17 C -0.34 -18.69 9.68 84.04 0.81 -17.88 16 18 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 20 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 21 Si 1.00 42.11 29.55 68.60 2.03 44.14 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 N -0.69 -9.28 5.87 -491.68 -2.89 -12.17 16 26 C 0.07 0.80 5.34 86.33 0.46 1.26 16 27 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.56 5.13 -2.39 -0.01 0.55 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.78 6.59 -2.39 -0.02 0.77 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.41 8.67 8.15 -92.71 -0.76 7.92 16 40 H 0.41 13.81 7.45 -92.71 -0.69 13.12 16 41 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 43 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 44 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 45 H 0.34 4.81 7.08 -89.69 -0.64 4.17 16 46 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -66.23 375.39 -2.86 -69.09 By element: Atomic # 1 Polarization: 50.42 SS G_CDS: -1.80 Total: 48.62 kcal Atomic # 6 Polarization: 28.43 SS G_CDS: 6.50 Total: 34.93 kcal Atomic # 7 Polarization: -129.14 SS G_CDS: -9.48 Total: -138.62 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -0.11 Total: -58.16 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -66.23 -2.86 -69.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576417418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.471 kcal (2) G-P(sol) polarization free energy of solvation -66.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds