Wall clock time and date at job start Fri Apr 10 2020 18:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47532 * 2 1 4 4 C 1.36449 * 127.13816 * 269.06345 * 3 2 1 5 5 N 1.38585 * 126.47247 * 0.24810 * 4 3 2 6 6 C 1.46893 * 111.00084 * 61.81748 * 5 4 3 7 7 C 1.46896 * 111.00270 * 185.77901 * 5 4 3 8 8 H 1.09008 * 109.47000 * 54.99374 * 7 5 4 9 9 C 1.52997 * 109.46872 * 294.99718 * 7 5 4 10 10 C 1.50699 * 109.47506 * 174.99680 * 7 5 4 11 11 H 1.08004 * 119.99855 * 359.97438 * 10 7 5 12 12 C 1.37869 * 120.00435 * 180.02562 * 10 7 5 13 13 N 1.31515 * 119.99880 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 120.00426 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.46970 * 59.99844 * 14 12 10 16 16 H 1.48499 * 109.47287 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47030 * 300.00164 * 14 12 10 18 18 N 1.31217 * 107.05886 * 180.26006 * 4 3 2 19 19 N 1.28525 * 109.85716 * 0.02562 * 18 4 3 20 20 C 1.30299 * 110.05505 * 0.02562 * 19 18 4 21 21 C 1.50702 * 126.34918 * 180.02562 * 20 19 18 22 22 C 1.52995 * 109.47163 * 114.52674 * 21 20 19 23 23 O 1.42898 * 109.47268 * 234.53222 * 21 20 19 24 24 C 1.53003 * 109.46852 * 354.53030 * 21 20 19 25 25 O 1.42902 * 109.47147 * 180.02562 * 24 21 20 26 26 C 1.42894 * 114.00079 * 180.02562 * 25 24 21 27 27 H 1.09000 * 109.47119 * 307.27298 * 1 2 3 28 28 H 1.08997 * 109.47009 * 67.26578 * 1 2 3 29 29 H 1.08996 * 109.47493 * 187.27305 * 1 2 3 30 30 H 1.08997 * 109.47301 * 239.99869 * 2 1 3 31 31 H 1.09006 * 109.47127 * 119.99788 * 2 1 3 32 32 H 1.08997 * 109.47305 * 49.24964 * 6 5 4 33 33 H 1.09004 * 109.46956 * 169.23909 * 6 5 4 34 34 H 1.09002 * 109.47759 * 289.24154 * 6 5 4 35 35 H 1.09002 * 109.47350 * 299.99937 * 9 7 5 36 36 H 1.09001 * 109.47382 * 60.00111 * 9 7 5 37 37 H 1.09007 * 109.46995 * 179.97438 * 9 7 5 38 38 H 0.96998 * 120.00176 * 179.97438 * 13 12 10 39 39 H 1.09004 * 109.46913 * 70.28636 * 22 21 20 40 40 H 1.09000 * 109.47473 * 190.29330 * 22 21 20 41 41 H 1.09000 * 109.47410 * 310.29228 * 22 21 20 42 42 H 0.96697 * 114.00411 * 59.99825 * 23 21 20 43 43 H 1.08999 * 109.46944 * 299.99574 * 24 21 20 44 44 H 1.09002 * 109.47518 * 60.00245 * 24 21 20 45 45 H 1.09001 * 109.47220 * 299.99761 * 26 25 24 46 46 H 1.08998 * 109.47474 * 59.99676 * 26 25 24 47 47 H 1.09006 * 109.47034 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3098 2.1519 -1.0876 5 7 2.1954 1.7776 -2.4170 6 6 0.8022 1.4581 -2.7559 7 6 2.7275 2.8197 -3.3051 8 1 3.7542 3.0502 -3.0203 9 6 1.8693 4.0804 -3.1835 10 6 2.6995 2.3285 -4.7295 11 1 2.3243 1.3406 -4.9527 12 6 3.1538 3.1395 -5.7476 13 7 3.6112 4.3422 -5.4757 14 14 3.1198 2.5303 -7.5131 15 1 1.7213 2.2164 -7.9015 16 1 3.6588 3.5834 -8.4107 17 1 3.9527 1.3065 -7.6306 18 7 2.7191 3.3144 -0.6371 19 7 2.7014 3.3153 0.6481 20 6 2.2838 2.1629 1.0900 21 6 2.1213 1.7660 2.5347 22 6 0.6397 1.5312 2.8355 23 8 2.8542 0.5648 2.7841 24 6 2.6533 2.8839 3.4337 25 8 2.4997 2.5073 4.8036 26 6 2.9677 3.4877 5.7319 27 1 -0.3633 0.6224 0.8178 28 1 -0.3633 0.3971 -0.9478 29 1 -0.3634 -1.0193 0.1301 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.1507 2.2599 -2.4085 33 1 0.7059 1.3544 -3.8367 34 1 0.5163 0.5230 -2.2743 35 1 0.8427 3.8500 -3.4681 36 1 1.8896 4.4359 -2.1532 37 1 2.2645 4.8539 -3.8421 38 1 3.9312 4.9128 -6.1919 39 1 0.3066 0.6226 2.3338 40 1 0.4997 1.4245 3.9112 41 1 0.0570 2.3792 2.4758 42 1 3.8031 0.6405 2.6140 43 1 3.7088 3.0511 3.2194 44 1 2.0942 3.8002 3.2436 45 1 4.0297 3.6683 5.5651 46 1 2.4146 4.4161 5.5896 47 1 2.8164 3.1264 6.7491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650313867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:05 Heat of formation + Delta-G solvation = -9.863392 kcal Electronic energy + Delta-G solvation = -28098.882145 eV Core-core repulsion = 24318.860166 eV Total energy + Delta-G solvation = -3780.021978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.09135 -39.91336 -39.00767 -37.76460 -36.61568 -34.80002 -33.30183 -31.68189 -30.85706 -30.29599 -28.46513 -27.32492 -27.07269 -26.32940 -25.06053 -23.97316 -23.10726 -21.19678 -21.02548 -18.90576 -18.40991 -17.60409 -17.56272 -17.20664 -17.12894 -16.84870 -16.37151 -16.12079 -15.82757 -15.33311 -15.17152 -14.82058 -14.57461 -14.40522 -14.06114 -13.66491 -13.43881 -13.39684 -13.26545 -13.03113 -12.97470 -12.84439 -12.77879 -12.66346 -12.54887 -12.30748 -12.20735 -12.09356 -11.96849 -11.75166 -11.40794 -11.34673 -11.12697 -10.89912 -10.67929 -10.60814 -10.50221 -9.10295 -8.12517 -6.27861 0.74163 1.23648 1.45457 1.47515 1.55189 1.78664 2.41107 2.56004 2.93031 3.07228 3.17232 3.31113 3.70824 3.74704 3.80091 4.00972 4.06361 4.22367 4.38290 4.42584 4.44981 4.47539 4.54695 4.59562 4.60052 4.62355 4.68864 4.78221 4.80738 4.84377 4.88286 4.95595 5.06234 5.09869 5.12782 5.19645 5.34180 5.41997 5.59299 5.60392 5.83644 6.03754 6.10692 6.21136 6.47915 6.57454 6.81232 7.41005 7.78971 8.93883 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.024942 B = 0.003553 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.353982 B = 7878.572577 C = 8559.526627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.094 3.906 3 N -0.459 5.459 4 C 0.372 3.628 5 N -0.456 5.456 6 C 0.030 3.970 7 C 0.242 3.758 8 H 0.002 0.998 9 C -0.155 4.155 10 C -0.527 4.527 11 H 0.072 0.928 12 C 0.013 3.987 13 N -0.919 5.919 14 Si 0.969 3.031 15 H -0.264 1.264 16 H -0.288 1.288 17 H -0.270 1.270 18 N -0.361 5.361 19 N -0.310 5.310 20 C 0.135 3.865 21 C 0.243 3.757 22 C -0.140 4.140 23 O -0.541 6.541 24 C 0.057 3.943 25 O -0.391 6.391 26 C 0.025 3.975 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.023 0.977 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.027 0.973 36 H 0.040 0.960 37 H 0.061 0.939 38 H 0.263 0.737 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.390 0.610 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.047 0.953 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.174 -9.542 18.573 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.027 4.027 3 N -0.154 5.154 4 C 0.014 3.986 5 N -0.179 5.179 6 C -0.116 4.116 7 C 0.136 3.864 8 H 0.020 0.980 9 C -0.214 4.214 10 C -0.565 4.565 11 H 0.090 0.910 12 C -0.186 4.186 13 N -0.557 5.557 14 Si 0.794 3.206 15 H -0.189 1.189 16 H -0.214 1.214 17 H -0.195 1.195 18 N -0.206 5.206 19 N -0.151 5.151 20 C -0.135 4.135 21 C 0.199 3.801 22 C -0.198 4.198 23 O -0.346 6.346 24 C -0.021 4.021 25 O -0.310 6.310 26 C -0.071 4.071 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.115 0.885 31 H 0.140 0.860 32 H 0.041 0.959 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.240 0.760 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.988 -8.847 18.607 21.756 hybrid contribution 0.389 0.289 -1.442 1.522 sum -6.598 -8.558 17.165 20.283 Atomic orbital electron populations 1.22584 0.92582 1.05472 1.03323 1.22299 0.96966 0.77143 1.06288 1.46315 1.50532 1.14668 1.03915 1.23196 0.99300 0.87139 0.88939 1.59158 1.20863 1.42310 0.95542 1.22722 0.84474 1.00398 1.04034 1.18926 0.92559 0.85283 0.89614 0.97966 1.22226 0.98010 1.01460 0.99744 1.21295 1.43036 1.01548 0.90633 0.90988 1.25778 0.94517 0.94835 1.03505 1.70076 1.42363 1.09408 1.33873 0.85449 0.78876 0.77765 0.78553 1.18920 1.21370 1.19542 1.74745 1.25753 1.17081 1.03004 1.73838 1.18342 1.19295 1.03577 1.25589 1.05396 0.89574 0.92952 1.19190 0.95441 0.84971 0.80482 1.21973 0.89794 1.03381 1.04606 1.86533 1.25027 1.33389 1.89683 1.22732 1.00580 0.96483 0.82293 1.87822 1.84452 1.44301 1.14434 1.22965 0.98687 0.92027 0.93436 0.91154 0.92026 0.87066 0.88476 0.86043 0.95867 0.89340 0.88447 0.95393 0.94155 0.92017 0.92810 0.89679 0.88947 0.91248 0.76029 0.92649 0.91890 0.93602 0.93432 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 9.46 71.98 0.68 -2.44 16 2 C 0.09 2.06 5.36 86.38 0.46 2.52 16 3 N -0.46 -14.46 2.81 -514.85 -1.45 -15.90 16 4 C 0.37 15.44 6.67 260.11 1.73 17.18 16 5 N -0.46 -19.81 4.79 -711.02 -3.40 -23.21 16 6 C 0.03 1.07 7.71 127.69 0.99 2.06 16 7 C 0.24 12.80 2.04 44.17 0.09 12.89 16 8 H 0.00 0.15 8.03 -2.38 -0.02 0.13 16 9 C -0.15 -8.17 8.29 71.98 0.60 -7.57 16 10 C -0.53 -28.41 7.72 25.60 0.20 -28.21 16 11 H 0.07 3.68 6.88 -2.91 -0.02 3.66 16 12 C 0.01 0.72 5.30 84.65 0.45 1.17 16 13 N -0.92 -53.86 11.32 21.44 0.24 -53.62 16 14 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 15 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 16 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 N -0.36 -16.85 9.14 -58.00 -0.53 -17.38 16 19 N -0.31 -12.41 11.51 -49.53 -0.57 -12.98 16 20 C 0.13 4.22 6.58 137.64 0.91 5.13 16 21 C 0.24 5.65 0.88 -11.54 -0.01 5.64 16 22 C -0.14 -2.72 8.06 71.98 0.58 -2.14 16 23 O -0.54 -11.20 11.50 -139.76 -1.61 -12.81 16 24 C 0.06 1.31 4.54 71.98 0.33 1.63 16 25 O -0.39 -8.14 9.76 -139.76 -1.36 -9.51 16 26 C 0.02 0.37 11.01 113.37 1.25 1.62 16 27 H 0.07 1.22 5.34 -2.39 -0.01 1.20 16 28 H 0.06 1.21 5.19 -2.39 -0.01 1.20 16 29 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.10 2.20 7.81 -2.39 -0.02 2.18 16 31 H 0.12 2.24 6.71 -2.38 -0.02 2.22 16 32 H 0.02 0.84 7.06 -2.39 -0.02 0.82 16 33 H 0.09 3.34 6.21 -2.38 -0.01 3.33 16 34 H 0.10 2.67 4.36 -2.39 -0.01 2.66 16 35 H 0.03 1.36 6.73 -2.39 -0.02 1.35 16 36 H 0.04 2.12 5.67 -2.39 -0.01 2.10 16 37 H 0.06 3.59 6.07 -2.38 -0.01 3.57 16 38 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.08 1.45 5.05 -2.39 -0.01 1.43 16 40 H 0.09 1.66 7.40 -2.39 -0.02 1.65 16 41 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 42 H 0.39 6.67 9.04 -74.06 -0.67 6.00 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -71.13 358.13 1.93 -69.20 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.33 Total: 21.97 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 8.25 Total: 9.47 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -5.71 Total: -123.09 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -2.97 Total: -22.31 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -71.13 1.93 -69.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650313867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.337 kcal (2) G-P(sol) polarization free energy of solvation -71.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds