Wall clock time and date at job start Fri Apr 10 2020 18:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46491 * 120.00399 * 2 1 4 4 C 1.50701 * 109.47130 * 269.99742 * 3 2 1 5 5 H 1.07999 * 120.00341 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00086 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00171 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 120.00007 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47013 * 60.00446 * 8 6 4 10 10 H 1.48498 * 109.47084 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47323 * 300.00292 * 8 6 4 12 12 C 1.34776 * 119.99537 * 179.97438 * 2 1 3 13 13 O 1.21363 * 120.00003 * 174.34651 * 12 2 1 14 14 C 1.49325 * 120.00523 * 354.34554 * 12 2 1 15 15 O 1.21382 * 119.99710 * 359.77216 * 14 12 2 16 16 N 1.34775 * 120.00655 * 179.77211 * 14 12 2 17 17 C 1.39257 * 120.00363 * 185.13323 * 16 14 12 18 18 C 1.38036 * 120.37745 * 326.18051 * 17 16 14 19 19 C 1.39078 * 120.83714 * 180.25501 * 18 17 16 20 20 C 1.36343 * 121.12695 * 359.43303 * 19 18 17 21 21 C 1.40153 * 119.80085 * 0.56366 * 20 19 18 22 22 C 1.40754 * 122.13809 * 179.74167 * 21 20 19 23 23 C 1.36165 * 118.66512 * 179.97438 * 22 21 20 24 24 N 1.32619 * 121.85868 * 0.02562 * 23 22 21 25 25 C 1.31318 * 122.74410 * 359.97438 * 24 23 22 26 26 C 1.40181 * 119.91125 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47497 * 264.06420 * 1 2 3 28 28 H 1.09008 * 109.46821 * 24.05866 * 1 2 3 29 29 H 1.08994 * 109.47435 * 144.05557 * 1 2 3 30 30 H 1.09001 * 109.47608 * 29.99689 * 3 2 1 31 31 H 1.09000 * 109.47577 * 149.99980 * 3 2 1 32 32 H 0.97001 * 119.99840 * 179.97438 * 7 6 4 33 33 H 0.97004 * 119.99262 * 5.13624 * 16 14 12 34 34 H 1.08003 * 119.58084 * 359.97438 * 18 17 16 35 35 H 1.08005 * 119.43450 * 179.72904 * 19 18 17 36 36 H 1.08007 * 120.09918 * 180.28339 * 20 19 18 37 37 H 1.07995 * 120.66983 * 0.02562 * 22 21 20 38 38 H 1.07997 * 119.07028 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.04591 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1262 2.8777 -1.6728 7 7 3.5535 3.6179 -0.6732 8 14 3.4382 3.4166 -3.4340 9 1 2.1409 3.5934 -4.1348 10 1 4.1807 4.7026 -3.4340 11 1 4.2416 2.3817 -4.1333 12 6 2.1388 -1.1672 0.0005 13 8 3.3480 -1.1699 -0.1030 14 6 1.3976 -2.4572 0.1285 15 8 0.1886 -2.4544 0.2362 16 7 2.0709 -3.6247 0.1244 17 6 1.3743 -4.8305 0.1359 18 6 0.1760 -4.9378 0.8127 19 6 -0.5251 -6.1388 0.8349 20 6 -0.0573 -7.2401 0.1813 21 6 1.1557 -7.1726 -0.5175 22 6 1.6868 -8.2804 -1.2044 23 6 2.8710 -8.1356 -1.8608 24 7 3.5311 -6.9854 -1.8681 25 6 3.0952 -5.9123 -1.2494 26 6 1.8844 -5.9552 -0.5443 27 1 -0.3634 -0.1063 1.0221 28 1 -0.3633 0.9385 -0.4190 29 1 -0.3634 -0.8319 -0.6032 30 1 1.6085 2.0284 0.5138 31 1 3.1499 1.1383 0.5138 32 1 4.0304 4.4438 -0.8505 33 1 3.0409 -3.6250 0.1135 34 1 -0.2199 -4.0796 1.3353 35 1 -1.4584 -6.1986 1.3751 36 1 -0.6177 -8.1632 0.2058 37 1 1.1652 -9.2260 -1.2115 38 1 3.2847 -8.9814 -2.3896 39 1 3.6684 -4.9976 -1.2844 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000549308301.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:29 Heat of formation + Delta-G solvation = -14.692599 kcal Electronic energy + Delta-G solvation = -24916.593104 eV Core-core repulsion = 21210.118879 eV Total energy + Delta-G solvation = -3706.474225 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.51160 -41.48049 -39.81963 -38.25256 -37.20535 -36.08878 -34.68862 -33.05703 -32.12645 -30.39500 -29.90187 -27.80367 -26.44118 -25.30878 -24.82028 -24.25605 -22.32088 -21.18849 -19.45883 -19.11498 -18.76283 -18.35964 -17.80212 -17.52518 -17.05632 -16.90039 -16.56425 -16.16561 -15.68569 -15.49310 -15.20978 -15.06721 -14.93125 -14.62002 -14.24789 -13.90502 -13.81210 -13.54008 -13.29279 -13.26220 -12.95688 -12.86882 -12.65498 -12.45348 -12.28921 -12.21925 -11.91099 -11.75632 -10.66978 -10.65701 -10.52844 -10.38545 -10.11965 -9.65739 -8.76841 -8.25955 -6.40451 -0.75061 -0.14053 0.21073 0.87801 1.21398 1.38508 1.41616 1.49494 1.99862 2.14897 2.35153 2.50479 3.02993 3.04908 3.20417 3.39523 3.58789 3.71415 3.82105 3.94685 4.24697 4.28851 4.40706 4.47236 4.63511 4.66836 4.69444 4.82804 4.84884 4.93783 5.03254 5.12091 5.19302 5.26423 5.39567 5.44778 5.60610 5.67893 5.82849 5.86596 5.97614 6.30324 6.57288 6.65959 6.92942 6.95044 7.29898 8.81494 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019845 B = 0.003173 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.572833 B = 8821.623351 C = 9743.815361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.570 5.570 3 C 0.257 3.743 4 C -0.549 4.549 5 H 0.053 0.947 6 C 0.014 3.986 7 N -0.924 5.924 8 Si 0.966 3.034 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.488 3.512 13 O -0.554 6.554 14 C 0.522 3.478 15 O -0.497 6.497 16 N -0.636 5.636 17 C 0.149 3.851 18 C -0.132 4.132 19 C -0.078 4.078 20 C -0.116 4.116 21 C -0.026 4.026 22 C -0.140 4.140 23 C 0.058 3.942 24 N -0.510 5.510 25 C 0.127 3.873 26 C -0.135 4.135 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.013 0.987 32 H 0.269 0.731 33 H 0.427 0.573 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.170 0.830 37 H 0.179 0.821 38 H 0.180 0.820 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 -24.647 2.614 26.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.301 5.301 3 C 0.137 3.863 4 C -0.587 4.587 5 H 0.071 0.929 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.790 3.210 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.270 3.730 13 O -0.433 6.433 14 C 0.305 3.695 15 O -0.371 6.371 16 N -0.282 5.282 17 C 0.053 3.947 18 C -0.152 4.152 19 C -0.097 4.097 20 C -0.135 4.135 21 C -0.032 4.032 22 C -0.159 4.159 23 C -0.084 4.084 24 N -0.219 5.219 25 C -0.044 4.044 26 C -0.138 4.138 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.266 0.734 34 H 0.157 0.843 35 H 0.179 0.821 36 H 0.188 0.812 37 H 0.196 0.804 38 H 0.197 0.803 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.953 -24.469 2.171 26.146 hybrid contribution 0.349 1.005 -0.297 1.105 sum -8.604 -23.464 1.874 25.062 Atomic orbital electron populations 1.22199 0.76969 1.03771 1.03154 1.48107 1.09108 1.05879 1.67005 1.19051 0.91501 0.79048 0.96732 1.21599 1.37507 1.06926 0.92707 0.92866 1.25788 0.94681 0.96196 1.01934 1.70018 1.38507 1.14785 1.33009 0.85488 0.78802 0.77483 0.79190 1.18734 1.20154 1.20222 1.20094 0.87401 0.85439 0.80087 1.90731 1.14935 1.87203 1.50464 1.20085 0.87344 0.84873 0.77198 1.90665 1.13434 1.86828 1.46180 1.42941 1.11862 1.03089 1.70312 1.17682 0.94978 0.84009 0.98057 1.21537 0.94749 1.00174 0.98777 1.21193 1.00158 0.90872 0.97493 1.21341 0.94356 1.00666 0.97092 1.18376 0.95385 0.92230 0.97176 1.22298 0.97094 0.99605 0.96917 1.22752 0.92929 0.95129 0.97637 1.67479 1.35216 1.00344 1.18811 1.23080 0.92329 0.97141 0.91812 1.18881 0.98570 0.94700 1.01698 0.90968 0.90982 0.89132 0.94559 0.96924 0.92166 0.73399 0.84323 0.82052 0.81237 0.80372 0.80347 0.82530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.77 9.26 127.77 1.18 3.96 16 2 N -0.57 -24.79 2.86 -852.90 -2.44 -27.23 16 3 C 0.26 13.54 5.09 85.63 0.44 13.98 16 4 C -0.55 -31.19 9.39 25.60 0.24 -30.95 16 5 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.78 5.46 84.65 0.46 1.24 16 7 N -0.92 -54.53 13.29 21.45 0.28 -54.25 16 8 Si 0.97 44.33 29.54 68.60 2.03 46.35 16 9 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 C 0.49 20.38 7.72 87.23 0.67 21.06 16 13 O -0.55 -26.51 16.12 -3.29 -0.05 -26.56 16 14 C 0.52 17.27 7.61 87.23 0.66 17.93 16 15 O -0.50 -15.97 10.62 -3.35 -0.04 -16.01 16 16 N -0.64 -17.70 5.01 -304.29 -1.52 -19.23 16 17 C 0.15 3.72 6.34 38.59 0.24 3.96 16 18 C -0.13 -2.92 8.69 22.42 0.19 -2.72 16 19 C -0.08 -1.19 9.94 22.03 0.22 -0.97 16 20 C -0.12 -1.57 9.79 22.29 0.22 -1.35 16 21 C -0.03 -0.48 5.75 -21.29 -0.12 -0.60 16 22 C -0.14 -1.98 9.88 22.40 0.22 -1.76 16 23 C 0.06 1.03 11.07 84.09 0.93 1.96 16 24 N -0.51 -12.44 10.30 -195.69 -2.02 -14.45 16 25 C 0.13 3.13 10.73 85.24 0.91 4.05 16 26 C -0.13 -3.15 5.75 -21.22 -0.12 -3.27 16 27 H 0.07 2.17 8.13 -2.39 -0.02 2.15 16 28 H 0.07 2.45 8.03 -2.38 -0.02 2.43 16 29 H 0.09 2.96 5.85 -2.39 -0.01 2.95 16 30 H 0.04 1.92 8.07 -2.39 -0.02 1.90 16 31 H 0.01 0.75 7.51 -2.39 -0.02 0.73 16 32 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.43 11.22 7.13 -92.71 -0.66 10.55 16 34 H 0.14 3.34 6.08 -2.91 -0.02 3.32 16 35 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 37 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 38 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.16 3.70 6.96 -2.91 -0.02 3.68 16 Total: -1.00 -71.85 337.62 3.05 -68.81 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.44 Total: 16.05 kcal Atomic # 6 Polarization: 20.16 SS G_CDS: 6.36 Total: 26.51 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -5.69 Total: -115.16 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -0.09 Total: -42.57 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -71.85 3.05 -68.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549308301.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.113 kcal (2) G-P(sol) polarization free energy of solvation -71.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds