Wall clock time and date at job start Fri Apr 10 2020 18:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47187 * 2 1 4 4 C 1.46501 * 119.99680 * 274.00081 * 3 2 1 5 5 C 1.50697 * 109.47250 * 280.84302 * 4 3 2 6 6 H 1.08007 * 120.00066 * 3.39414 * 5 4 3 7 7 C 1.37875 * 120.00148 * 183.39823 * 5 4 3 8 8 N 1.31516 * 120.00166 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00166 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47358 * 89.99440 * 9 7 5 11 11 H 1.48496 * 109.47337 * 210.00219 * 9 7 5 12 12 H 1.48507 * 109.46845 * 329.99913 * 9 7 5 13 13 S 1.65602 * 120.00204 * 94.00128 * 3 2 1 14 14 O 1.42097 * 106.40030 * 336.30908 * 13 3 2 15 15 O 1.42102 * 106.39897 * 203.39110 * 13 3 2 16 16 N 1.65601 * 107.21595 * 89.85032 * 13 3 2 17 17 C 1.46493 * 120.00007 * 65.48557 * 16 13 3 18 18 C 1.50703 * 109.47064 * 164.40598 * 17 16 13 19 19 C 1.38220 * 119.62033 * 94.99687 * 18 17 16 20 20 C 1.38626 * 119.16167 * 179.97438 * 19 18 17 21 21 C 1.38677 * 118.42198 * 0.02562 * 20 19 18 22 22 C 1.50690 * 120.42272 * 180.02562 * 21 20 19 23 23 C 1.38183 * 119.15737 * 359.97438 * 21 20 19 24 24 N 1.31856 * 119.61426 * 274.72363 * 18 17 16 25 25 H 1.09000 * 109.46837 * 65.05446 * 1 2 3 26 26 H 1.08997 * 109.47282 * 185.05401 * 1 2 3 27 27 H 1.09005 * 109.47055 * 305.05458 * 1 2 3 28 28 H 1.08995 * 109.47058 * 239.99298 * 2 1 3 29 29 H 1.09007 * 109.46975 * 119.99588 * 2 1 3 30 30 H 1.09000 * 109.47198 * 40.84187 * 4 3 2 31 31 H 1.08994 * 109.47306 * 160.83858 * 4 3 2 32 32 H 0.96999 * 120.00295 * 180.02562 * 8 7 5 33 33 H 0.96998 * 119.99754 * 245.47910 * 16 13 3 34 34 H 1.08998 * 109.47649 * 44.39850 * 17 16 13 35 35 H 1.09005 * 109.46918 * 284.39751 * 17 16 13 36 36 H 1.08001 * 120.41940 * 359.95343 * 19 18 17 37 37 H 1.08002 * 120.79166 * 180.02562 * 20 19 18 38 38 H 1.08998 * 109.47511 * 89.99944 * 22 21 20 39 39 H 1.08997 * 109.47316 * 210.00014 * 22 21 20 40 40 H 1.09010 * 109.47129 * 329.99679 * 22 21 20 41 41 H 1.07998 * 119.61513 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1791 2.1013 -1.2657 5 6 3.4606 1.6691 -1.9303 6 1 4.0647 0.8924 -1.4849 7 6 3.8621 2.2651 -3.1070 8 7 4.9807 1.8882 -3.6868 9 14 2.8178 3.6089 -3.8770 10 1 3.2454 4.9305 -3.3516 11 1 2.9877 3.5840 -5.3520 12 1 1.3897 3.3807 -3.5394 13 16 2.3888 2.1286 1.4306 14 8 1.6441 1.4581 2.4381 15 8 2.2895 3.5257 1.1909 16 7 3.9851 1.8204 1.7457 17 6 5.0232 2.3599 0.8641 18 6 6.3610 2.2751 1.5527 19 6 7.1839 1.1902 1.3155 20 6 8.4127 1.1221 1.9536 21 6 8.7692 2.1522 2.8108 22 6 10.0945 2.1244 3.5274 23 6 7.8942 3.2051 2.9986 24 7 6.7352 3.2394 2.3704 25 1 -0.3633 0.4334 -0.9318 26 1 -0.3634 -1.0236 0.0905 27 1 -0.3633 0.5903 0.8413 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.3369 1.8776 -1.9204 31 1 2.2139 3.1733 -1.0720 32 1 5.2634 2.3078 -4.5144 33 1 4.2326 1.2827 2.5142 34 1 4.7987 3.4012 0.6331 35 1 5.0525 1.7811 -0.0592 36 1 6.8733 0.4052 0.6418 37 1 9.0766 0.2867 1.7871 38 1 10.8487 2.6198 2.9160 39 1 10.0025 2.6429 4.4818 40 1 10.3910 1.0902 3.7030 41 1 8.1646 4.0115 3.6642 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572757801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:39 Heat of formation + Delta-G solvation = -47.459809 kcal Electronic energy + Delta-G solvation = -24660.035714 eV Core-core repulsion = 21087.584547 eV Total energy + Delta-G solvation = -3572.451167 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.20463 -36.72975 -36.19401 -35.31289 -35.25432 -33.14404 -32.67371 -31.72089 -30.23302 -28.08525 -27.15469 -24.75791 -23.34373 -22.94027 -21.58341 -21.33072 -18.85543 -17.45880 -17.02820 -16.91692 -16.52057 -16.19672 -15.53165 -15.04458 -14.80153 -14.27508 -14.19824 -13.89249 -13.45156 -13.25249 -13.14523 -12.80023 -12.70277 -12.54724 -12.44890 -12.31881 -12.05274 -11.95757 -11.77469 -11.49210 -11.40771 -11.19844 -11.12766 -10.98472 -10.52145 -10.37634 -10.16931 -9.70843 -9.66502 -9.29503 -8.99021 -8.77009 -8.68256 -8.13497 -6.21341 -4.21734 1.00059 1.32745 1.39984 3.25546 3.32740 3.37342 3.46497 3.89292 4.15410 4.32713 4.40081 4.75806 4.78697 4.93476 4.98855 5.08601 5.12528 5.35973 5.39396 5.41121 5.56552 5.68700 5.73040 5.76680 5.81333 5.96614 6.03265 6.07669 6.26075 6.27541 6.35439 6.49024 6.54440 6.61889 6.80539 6.86852 7.10167 7.25090 7.45974 7.55780 8.12682 8.35735 8.79296 9.40188 10.90062 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.005257 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.278859 B = 5325.016454 C = 6698.793473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.987 5.987 4 C 0.212 3.788 5 C -0.543 4.543 6 H 0.083 0.917 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.867 3.133 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.263 1.263 13 S 2.789 3.211 14 O -0.996 6.996 15 O -0.980 6.980 16 N -1.121 6.121 17 C 0.165 3.835 18 C 0.122 3.878 19 C -0.145 4.145 20 C -0.080 4.080 21 C -0.145 4.145 22 C -0.107 4.107 23 C 0.094 3.906 24 N -0.468 5.468 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.266 0.734 33 H 0.407 0.593 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.368 -3.569 10.689 12.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.828 5.828 4 C 0.088 3.912 5 C -0.582 4.582 6 H 0.101 0.899 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.693 3.307 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.188 1.188 13 S 2.796 3.204 14 O -0.980 6.980 15 O -0.964 6.964 16 N -0.880 5.880 17 C 0.039 3.961 18 C -0.016 4.016 19 C -0.165 4.165 20 C -0.106 4.106 21 C -0.147 4.147 22 C -0.164 4.164 23 C -0.064 4.064 24 N -0.176 5.176 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.239 0.761 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.253 -2.169 11.000 11.992 hybrid contribution 0.665 -0.474 -0.687 1.068 sum 4.918 -2.643 10.313 11.727 Atomic orbital electron populations 1.22214 0.96973 1.01520 1.02221 1.21003 0.93489 0.82481 1.02619 1.57545 1.78944 1.23237 1.23031 1.19599 0.98150 0.92398 0.81069 1.21407 1.05984 1.22695 1.08105 0.89862 1.24828 0.94707 0.96419 0.96540 1.69874 1.21786 1.42276 1.18904 0.86979 0.81763 0.83174 0.78743 1.19620 1.21094 1.18783 1.01653 0.72516 0.73630 0.72585 1.93554 1.69552 1.76542 1.58382 1.93569 1.85993 1.31219 1.85594 1.55867 1.24876 1.68398 1.38847 1.20412 0.81559 1.01994 0.92086 1.21369 0.96529 0.89978 0.93772 1.22129 0.94635 0.99508 1.00278 1.21481 0.96154 0.98098 0.94899 1.20930 0.98185 0.96264 0.99325 1.20690 0.93325 1.02718 0.99708 1.22646 0.89422 0.96862 0.97471 1.67555 1.16631 1.26965 1.06492 0.92311 0.92195 0.92617 0.89699 0.91675 0.94705 0.93736 0.92439 0.76140 0.88956 0.86733 0.84034 0.84923 0.91021 0.91353 0.91505 0.83074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 10.24 37.16 0.38 -2.17 16 2 C 0.13 2.16 6.01 -4.04 -0.02 2.14 16 3 N -0.99 -19.23 2.84 -115.66 -0.33 -19.56 16 4 C 0.21 4.73 4.54 -5.19 -0.02 4.71 16 5 C -0.54 -13.42 8.50 -34.44 -0.29 -13.71 16 6 H 0.08 2.13 6.97 -52.48 -0.37 1.77 16 7 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.89 -24.69 13.96 55.43 0.77 -23.92 16 9 Si 0.87 20.29 27.40 -169.99 -4.66 15.63 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.26 -5.93 6.64 56.52 0.38 -5.56 16 13 S 2.79 54.44 6.11 -107.50 -0.66 53.79 16 14 O -1.00 -19.97 17.08 -57.17 -0.98 -20.95 16 15 O -0.98 -22.31 16.10 -57.17 -0.92 -23.23 16 16 N -1.12 -19.17 6.04 -11.66 -0.07 -19.24 16 17 C 0.17 3.03 6.46 -5.20 -0.03 3.00 16 18 C 0.12 2.02 6.18 -82.59 -0.51 1.51 16 19 C -0.14 -2.06 9.72 -39.44 -0.38 -2.44 16 20 C -0.08 -0.95 9.86 -39.28 -0.39 -1.34 16 21 C -0.14 -1.64 5.90 -104.48 -0.62 -2.26 16 22 C -0.11 -0.82 10.04 36.00 0.36 -0.46 16 23 C 0.09 1.23 10.86 -17.55 -0.19 1.04 16 24 N -0.47 -7.72 10.27 -9.47 -0.10 -7.82 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 28 H 0.08 1.41 8.06 -51.93 -0.42 0.99 16 29 H 0.06 0.97 7.65 -51.93 -0.40 0.57 16 30 H 0.03 0.77 7.44 -51.93 -0.39 0.39 16 31 H 0.04 1.05 6.07 -51.93 -0.32 0.74 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.41 5.99 8.65 -34.47 -0.30 5.70 16 34 H 0.09 1.87 7.73 -51.93 -0.40 1.47 16 35 H 0.11 2.25 5.48 -51.93 -0.28 1.97 16 36 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.45 8.09 -51.93 -0.42 0.02 16 40 H 0.07 0.44 8.10 -51.92 -0.42 0.02 16 41 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -31.49 353.66 -9.25 -40.74 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.83 Total: 7.24 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.82 Total: -8.01 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: 0.28 Total: -70.53 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -1.90 Total: -44.18 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.66 Total: 15.63 kcal Atomic # 16 Polarization: 54.44 SS G_CDS: -0.66 Total: 53.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.49 -9.25 -40.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572757801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.722 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds