Wall clock time and date at job start Fri Apr 10 2020 18:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47187 * 2 1 4 4 C 1.46501 * 119.99680 * 274.00081 * 3 2 1 5 5 C 1.50697 * 109.47250 * 280.84302 * 4 3 2 6 6 H 1.08007 * 120.00066 * 3.39414 * 5 4 3 7 7 C 1.37875 * 120.00148 * 183.39823 * 5 4 3 8 8 N 1.31516 * 120.00166 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00166 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47358 * 89.99440 * 9 7 5 11 11 H 1.48496 * 109.47337 * 210.00219 * 9 7 5 12 12 H 1.48507 * 109.46845 * 329.99913 * 9 7 5 13 13 S 1.65602 * 120.00204 * 94.00128 * 3 2 1 14 14 O 1.42097 * 106.40030 * 336.30908 * 13 3 2 15 15 O 1.42102 * 106.39897 * 203.39110 * 13 3 2 16 16 N 1.65601 * 107.21595 * 89.85032 * 13 3 2 17 17 C 1.46493 * 120.00007 * 65.48557 * 16 13 3 18 18 C 1.50703 * 109.47064 * 164.40598 * 17 16 13 19 19 C 1.38220 * 119.62033 * 94.99687 * 18 17 16 20 20 C 1.38626 * 119.16167 * 179.97438 * 19 18 17 21 21 C 1.38677 * 118.42198 * 0.02562 * 20 19 18 22 22 C 1.50690 * 120.42272 * 180.02562 * 21 20 19 23 23 C 1.38183 * 119.15737 * 359.97438 * 21 20 19 24 24 N 1.31856 * 119.61426 * 274.72363 * 18 17 16 25 25 H 1.09000 * 109.46837 * 65.05446 * 1 2 3 26 26 H 1.08997 * 109.47282 * 185.05401 * 1 2 3 27 27 H 1.09005 * 109.47055 * 305.05458 * 1 2 3 28 28 H 1.08995 * 109.47058 * 239.99298 * 2 1 3 29 29 H 1.09007 * 109.46975 * 119.99588 * 2 1 3 30 30 H 1.09000 * 109.47198 * 40.84187 * 4 3 2 31 31 H 1.08994 * 109.47306 * 160.83858 * 4 3 2 32 32 H 0.96999 * 120.00295 * 180.02562 * 8 7 5 33 33 H 0.96998 * 119.99754 * 245.47910 * 16 13 3 34 34 H 1.08998 * 109.47649 * 44.39850 * 17 16 13 35 35 H 1.09005 * 109.46918 * 284.39751 * 17 16 13 36 36 H 1.08001 * 120.41940 * 359.95343 * 19 18 17 37 37 H 1.08002 * 120.79166 * 180.02562 * 20 19 18 38 38 H 1.08998 * 109.47511 * 89.99944 * 22 21 20 39 39 H 1.08997 * 109.47316 * 210.00014 * 22 21 20 40 40 H 1.09010 * 109.47129 * 329.99679 * 22 21 20 41 41 H 1.07998 * 119.61513 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1791 2.1013 -1.2657 5 6 3.4606 1.6691 -1.9303 6 1 4.0647 0.8924 -1.4849 7 6 3.8621 2.2651 -3.1070 8 7 4.9807 1.8882 -3.6868 9 14 2.8178 3.6089 -3.8770 10 1 3.2454 4.9305 -3.3516 11 1 2.9877 3.5840 -5.3520 12 1 1.3897 3.3807 -3.5394 13 16 2.3888 2.1286 1.4306 14 8 1.6441 1.4581 2.4381 15 8 2.2895 3.5257 1.1909 16 7 3.9851 1.8204 1.7457 17 6 5.0232 2.3599 0.8641 18 6 6.3610 2.2751 1.5527 19 6 7.1839 1.1902 1.3155 20 6 8.4127 1.1221 1.9536 21 6 8.7692 2.1522 2.8108 22 6 10.0945 2.1244 3.5274 23 6 7.8942 3.2051 2.9986 24 7 6.7352 3.2394 2.3704 25 1 -0.3633 0.4334 -0.9318 26 1 -0.3634 -1.0236 0.0905 27 1 -0.3633 0.5903 0.8413 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.3369 1.8776 -1.9204 31 1 2.2139 3.1733 -1.0720 32 1 5.2634 2.3078 -4.5144 33 1 4.2326 1.2827 2.5142 34 1 4.7987 3.4012 0.6331 35 1 5.0525 1.7811 -0.0592 36 1 6.8733 0.4052 0.6418 37 1 9.0766 0.2867 1.7871 38 1 10.8487 2.6198 2.9160 39 1 10.0025 2.6429 4.4818 40 1 10.3910 1.0902 3.7030 41 1 8.1646 4.0115 3.6642 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572757801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:38 Heat of formation + Delta-G solvation = -70.535726 kcal Electronic energy + Delta-G solvation = -24661.036361 eV Core-core repulsion = 21087.584547 eV Total energy + Delta-G solvation = -3573.451814 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27185 -38.38567 -37.77708 -36.94319 -36.62375 -34.62069 -34.18540 -32.78816 -31.78140 -29.14858 -28.87263 -25.89196 -24.58346 -24.37302 -23.17823 -22.42937 -20.42222 -19.12891 -18.71738 -18.55248 -17.67825 -17.58828 -17.00107 -16.30788 -16.03763 -15.94221 -15.58203 -15.07627 -14.80994 -14.65788 -14.38832 -14.19060 -14.05330 -13.85796 -13.75164 -13.54293 -13.38167 -13.22698 -13.20152 -13.11168 -13.03926 -12.75127 -12.61079 -12.33298 -12.20306 -12.09404 -11.68777 -11.56877 -10.73933 -10.71903 -10.50496 -10.38659 -9.85630 -9.71373 -8.24666 -6.26387 -0.41466 0.12469 0.35595 1.37805 1.43537 1.48846 1.95116 2.37738 2.52984 2.84516 3.10547 3.23460 3.43601 3.78454 3.93820 3.94869 4.05253 4.08616 4.23988 4.41550 4.47321 4.61508 4.64147 4.72131 4.76445 4.86780 4.90771 4.95780 4.98936 5.02855 5.05502 5.21188 5.22277 5.36121 5.40691 5.45835 5.50956 5.78680 5.79899 6.08584 6.35863 6.77098 7.03817 7.37208 8.88880 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.005257 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.278859 B = 5325.016454 C = 6698.793473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.988 5.988 4 C 0.218 3.782 5 C -0.528 4.528 6 H 0.068 0.932 7 C 0.032 3.968 8 N -0.929 5.929 9 Si 0.910 3.090 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.247 1.247 13 S 2.800 3.200 14 O -0.999 6.999 15 O -1.014 7.014 16 N -1.108 6.108 17 C 0.176 3.824 18 C 0.093 3.907 19 C -0.152 4.152 20 C -0.079 4.079 21 C -0.131 4.131 22 C -0.105 4.105 23 C 0.081 3.919 24 N -0.502 5.502 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.419 0.581 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.142 0.858 37 H 0.165 0.835 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.159 -4.475 11.947 14.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.005 4.005 3 N -0.829 5.829 4 C 0.093 3.907 5 C -0.567 4.567 6 H 0.086 0.914 7 C -0.168 4.168 8 N -0.568 5.568 9 Si 0.735 3.265 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.171 1.171 13 S 2.808 3.192 14 O -0.983 6.983 15 O -0.998 6.998 16 N -0.870 5.870 17 C 0.050 3.950 18 C -0.044 4.044 19 C -0.173 4.173 20 C -0.105 4.105 21 C -0.133 4.133 22 C -0.162 4.162 23 C -0.077 4.077 24 N -0.211 5.211 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.253 0.747 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.160 0.840 37 H 0.183 0.817 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.013 -3.102 12.280 13.622 hybrid contribution 0.531 -0.247 -0.958 1.123 sum 5.545 -3.349 11.322 13.044 Atomic orbital electron populations 1.22204 0.95457 1.03327 1.01690 1.21289 0.94818 0.80855 1.03496 1.57478 1.79301 1.24397 1.21736 1.19379 0.97165 0.91995 0.82193 1.21560 1.06322 1.21394 1.07455 0.91429 1.25438 0.95632 0.98315 0.97376 1.69971 1.23398 1.43877 1.19582 0.86278 0.81439 0.80691 0.78132 1.20261 1.20700 1.17059 1.01155 0.72768 0.72824 0.72407 1.93541 1.70023 1.76350 1.58373 1.93524 1.86662 1.33532 1.86056 1.55575 1.23894 1.68354 1.39128 1.20090 0.83261 0.99707 0.91981 1.21067 0.96199 0.91635 0.95537 1.22192 0.95541 0.98864 1.00718 1.21877 0.95403 0.99192 0.94029 1.21366 0.99121 0.94781 0.98068 1.20788 0.91067 1.04269 1.00054 1.23165 0.88750 0.98331 0.97438 1.67440 1.18688 1.27518 1.07456 0.92569 0.89156 0.93498 0.89780 0.89883 0.93791 0.94946 0.92538 0.74706 0.91831 0.88599 0.83981 0.81707 0.89876 0.89843 0.89834 0.80615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.72 10.24 71.98 0.74 -3.99 16 2 C 0.12 3.86 6.01 86.38 0.52 4.38 16 3 N -0.99 -38.39 2.84 -519.84 -1.48 -39.86 16 4 C 0.22 9.75 4.54 85.63 0.39 10.14 16 5 C -0.53 -26.53 8.50 25.60 0.22 -26.32 16 6 H 0.07 3.56 6.97 -2.91 -0.02 3.54 16 7 C 0.03 1.72 5.47 84.65 0.46 2.19 16 8 N -0.93 -52.57 13.96 21.45 0.30 -52.27 16 9 Si 0.91 41.79 27.40 68.60 1.88 43.67 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.25 -10.60 6.64 99.48 0.66 -9.94 16 13 S 2.80 110.16 6.11 -56.49 -0.34 109.81 16 14 O -1.00 -39.35 17.08 -128.00 -2.19 -41.54 16 15 O -1.01 -47.21 16.10 -128.00 -2.06 -49.27 16 16 N -1.11 -38.73 6.04 -190.79 -1.15 -39.88 16 17 C 0.18 6.77 6.46 85.64 0.55 7.32 16 18 C 0.09 3.17 6.18 42.55 0.26 3.43 16 19 C -0.15 -4.30 9.72 22.36 0.22 -4.08 16 20 C -0.08 -1.71 9.86 22.47 0.22 -1.49 16 21 C -0.13 -2.63 5.90 -19.78 -0.12 -2.75 16 22 C -0.10 -1.19 10.04 71.23 0.71 -0.48 16 23 C 0.08 2.01 10.86 84.67 0.92 2.93 16 24 N -0.50 -16.70 10.27 -183.89 -1.89 -18.59 16 25 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 1.40 8.09 -2.38 -0.02 1.38 16 28 H 0.08 2.71 8.06 -2.39 -0.02 2.69 16 29 H 0.08 2.35 7.65 -2.38 -0.02 2.33 16 30 H 0.04 1.91 7.44 -2.39 -0.02 1.89 16 31 H 0.03 1.55 6.07 -2.39 -0.01 1.54 16 32 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.42 12.42 8.65 -96.75 -0.84 11.58 16 34 H 0.06 2.76 7.73 -2.39 -0.02 2.74 16 35 H 0.10 4.00 5.48 -2.38 -0.01 3.99 16 36 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 37 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 40 H 0.08 0.73 8.10 -2.38 -0.02 0.71 16 41 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -68.57 353.66 -1.68 -70.25 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.16 Total: 26.39 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 5.10 Total: -8.71 kcal Atomic # 7 Polarization: -146.39 SS G_CDS: -4.22 Total: -150.61 kcal Atomic # 8 Polarization: -86.56 SS G_CDS: -4.25 Total: -90.80 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.88 Total: 43.67 kcal Atomic # 16 Polarization: 110.16 SS G_CDS: -0.34 Total: 109.81 kcal Total: -68.57 -1.68 -70.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572757801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.287 kcal (2) G-P(sol) polarization free energy of solvation -68.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds