Wall clock time and date at job start Fri Apr 10 2020 18:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47151 * 2 1 4 4 H 1.08996 * 109.47204 * 305.00207 * 3 2 1 5 5 O 1.42902 * 109.46781 * 65.00183 * 3 2 1 6 6 C 1.52999 * 109.47250 * 184.99889 * 3 2 1 7 7 N 1.46495 * 109.47042 * 180.02562 * 6 3 2 8 8 S 1.65603 * 119.99786 * 164.99961 * 7 6 3 9 9 O 1.42100 * 104.27742 * 308.93042 * 8 7 6 10 10 O 1.42104 * 104.27669 * 181.07201 * 8 7 6 11 11 C 1.81401 * 104.44856 * 65.00185 * 8 7 6 12 12 C 1.50701 * 109.47410 * 179.97438 * 11 8 7 13 13 C 1.38632 * 119.74855 * 269.73244 * 12 11 8 14 14 C 1.37622 * 120.24185 * 179.71996 * 13 12 11 15 15 C 1.40711 * 119.74669 * 0.56508 * 14 13 12 16 16 C 1.41400 * 120.24519 * 179.68031 * 15 14 13 17 17 H 1.07993 * 120.00417 * 204.40825 * 16 15 14 18 18 C 1.39949 * 119.99722 * 24.41101 * 16 15 14 19 19 N 1.30829 * 120.00062 * 17.84366 * 18 16 15 20 20 Si 1.86798 * 120.00043 * 197.84420 * 18 16 15 21 21 H 1.48498 * 109.46821 * 90.00230 * 20 18 16 22 22 H 1.48501 * 109.47257 * 209.99803 * 20 18 16 23 23 H 1.48498 * 109.47318 * 330.00157 * 20 18 16 24 24 C 1.40712 * 119.51307 * 359.70755 * 15 14 13 25 25 C 1.37615 * 119.74605 * 359.97438 * 24 15 14 26 26 H 1.08998 * 109.47561 * 299.99706 * 1 2 3 27 27 H 1.09010 * 109.47191 * 59.99791 * 1 2 3 28 28 H 1.08999 * 109.47176 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46878 * 240.00248 * 2 1 3 30 30 H 1.08997 * 109.47325 * 120.00349 * 2 1 3 31 31 H 0.96696 * 114.00137 * 59.99707 * 5 3 2 32 32 H 1.09004 * 109.46847 * 60.00433 * 6 3 2 33 33 H 1.09004 * 109.47193 * 300.00575 * 6 3 2 34 34 H 0.97001 * 120.00359 * 345.00031 * 7 6 3 35 35 H 1.09007 * 109.47035 * 59.99678 * 11 8 7 36 36 H 1.08996 * 109.47205 * 300.00052 * 11 8 7 37 37 H 1.08000 * 119.87692 * 359.96552 * 13 12 11 38 38 H 1.08002 * 120.12182 * 180.27799 * 14 13 12 39 39 H 0.96994 * 119.99970 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.12698 * 179.97438 * 24 15 14 41 41 H 1.08000 * 119.87918 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4444 -0.1257 7 7 4.0531 2.8256 -0.1251 8 16 5.6607 3.1353 0.1242 9 8 5.9774 2.4137 1.3067 10 8 5.7550 4.5526 0.0833 11 6 6.4911 2.4004 -1.3115 12 6 7.9778 2.6201 -1.1989 13 6 8.5484 3.7581 -1.7477 14 6 9.9042 3.9718 -1.6458 15 6 10.7131 3.0241 -0.9919 16 6 12.1081 3.2297 -0.8871 17 1 12.7703 2.3861 -0.7604 18 6 12.6307 4.5266 -0.9474 19 7 11.8488 5.5568 -0.7501 20 14 14.4447 4.7867 -1.3097 21 1 14.6444 4.9051 -2.7764 22 1 14.9088 6.0309 -0.6449 23 1 15.2228 3.6310 -0.7958 24 6 10.1236 1.8700 -0.4437 25 6 8.7649 1.6802 -0.5517 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.0141 1.6542 2.0139 32 1 3.8531 0.9571 -1.0571 33 1 3.9994 0.9053 0.7161 34 1 3.4349 3.5587 -0.2706 35 1 6.1229 2.8698 -2.2238 36 1 6.2829 1.3310 -1.3437 37 1 7.9263 4.4815 -2.2537 38 1 10.3461 4.8612 -2.0702 39 1 12.2111 6.4556 -0.7915 40 1 10.7352 1.1360 0.0599 41 1 8.3102 0.7954 -0.1313 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592055128.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:12 Heat of formation + Delta-G solvation = -125.958729 kcal Electronic energy + Delta-G solvation = -23515.581064 eV Core-core repulsion = 19907.433177 eV Total energy + Delta-G solvation = -3608.147887 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.55654 -37.78464 -36.57073 -35.42033 -34.45563 -34.17005 -33.06632 -31.50862 -29.44464 -28.19176 -27.84000 -24.24114 -23.55700 -21.84270 -21.17187 -20.37991 -18.95357 -17.48424 -17.41746 -16.91437 -16.45937 -15.82435 -15.65039 -15.45368 -14.82106 -14.47059 -14.40360 -13.97030 -13.84603 -13.76568 -12.99259 -12.68397 -12.52096 -12.35352 -12.16159 -12.08286 -11.89526 -11.69049 -11.57298 -11.50333 -11.36362 -11.33259 -11.17033 -11.11523 -11.01072 -10.61132 -10.33728 -10.22457 -9.81879 -9.54200 -9.44721 -9.20290 -7.61995 -7.45458 -6.91344 -4.49659 0.64311 2.62970 2.95141 3.00722 3.04254 3.09203 3.10614 3.82448 4.07627 4.19092 4.36668 4.49117 4.56388 4.59908 4.70161 4.99880 5.02778 5.23209 5.28748 5.31988 5.38599 5.49467 5.53901 5.60012 5.80539 5.89838 5.91270 6.03809 6.18624 6.25652 6.83083 6.92142 7.04618 7.09711 7.18441 7.39153 7.45584 7.66176 7.89535 7.90336 8.12641 8.47804 8.72229 8.80093 10.02089 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.040081 B = 0.002679 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.417068 B =10450.382739 C =10724.740309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.158 4.158 3 C 0.101 3.899 4 H 0.104 0.896 5 O -0.556 6.556 6 C 0.081 3.919 7 N -1.125 6.125 8 S 2.578 3.422 9 O -0.965 6.965 10 O -0.961 6.961 11 C -0.521 4.521 12 C -0.238 4.238 13 C -0.081 4.081 14 C -0.167 4.167 15 C 0.117 3.883 16 C -0.449 4.449 17 H 0.083 0.917 18 C 0.072 3.928 19 N -0.778 5.778 20 Si 0.914 3.086 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.226 4.226 25 C -0.068 4.068 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.377 0.623 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.414 0.586 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.285 0.715 40 H 0.099 0.901 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.961 -8.114 -1.917 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C 0.040 3.960 4 H 0.122 0.878 5 O -0.361 6.361 6 C -0.046 4.046 7 N -0.882 5.882 8 S 2.678 3.322 9 O -0.955 6.955 10 O -0.951 6.951 11 C -0.651 4.651 12 C -0.244 4.244 13 C -0.101 4.101 14 C -0.187 4.187 15 C 0.113 3.887 16 C -0.478 4.478 17 H 0.101 0.899 18 C -0.148 4.148 19 N -0.402 5.402 20 Si 0.738 3.262 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.246 4.246 25 C -0.088 4.088 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.225 0.775 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.248 0.752 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.141 0.859 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.899 -7.136 -1.479 17.490 hybrid contribution 0.741 -0.261 -0.471 0.917 sum -15.158 -7.397 -1.950 16.979 Atomic orbital electron populations 1.21690 0.94862 1.01538 1.02468 1.22225 0.97385 0.96706 1.03302 1.22162 0.92008 0.93337 0.88454 0.87784 1.86571 1.76533 1.57441 1.15598 1.22001 0.96514 0.83511 1.02569 1.55818 1.28158 1.12895 1.91295 1.06578 0.72680 0.75060 0.77897 1.93513 1.82883 1.74796 1.44296 1.93553 1.84814 1.29025 1.87743 1.28939 1.06499 1.11535 1.18165 1.18099 0.89245 1.00940 1.16072 1.20615 0.95622 0.95133 0.98687 1.21328 0.92199 1.01746 1.03382 1.17741 0.93382 0.90412 0.87116 1.19743 0.92491 0.93106 1.42417 0.89888 1.26036 1.00901 0.95677 0.92142 1.69828 1.38047 1.00208 1.32159 0.86216 0.81582 0.78825 0.79611 1.19094 1.20111 1.18436 1.20972 0.93619 1.01647 1.08327 1.20453 0.94202 0.96626 0.97477 0.92001 0.92726 0.92751 0.90641 0.91146 0.77483 0.91123 0.90056 0.75250 0.86023 0.86416 0.88691 0.85932 0.90349 0.88327 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.81 37.16 0.36 -0.55 16 2 C -0.16 -0.97 5.61 -26.73 -0.15 -1.12 16 3 C 0.10 0.79 3.06 -26.73 -0.08 0.71 16 4 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 5 O -0.56 -5.24 12.74 -35.23 -0.45 -5.69 16 6 C 0.08 0.76 5.80 -4.05 -0.02 0.73 16 7 N -1.12 -13.60 5.75 -10.61 -0.06 -13.66 16 8 S 2.58 44.28 5.44 -107.50 -0.59 43.70 16 9 O -0.97 -19.48 17.50 -57.54 -1.01 -20.48 16 10 O -0.96 -20.26 18.08 -57.54 -1.04 -21.30 16 11 C -0.52 -8.38 6.19 36.01 0.22 -8.16 16 12 C -0.24 -5.15 5.16 -104.33 -0.54 -5.69 16 13 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 14 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 15 C 0.12 3.07 5.57 -106.83 -0.60 2.48 16 16 C -0.45 -11.55 9.05 -37.74 -0.34 -11.89 16 17 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 18 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 19 N -0.78 -19.81 10.95 55.55 0.61 -19.20 16 20 Si 0.91 18.04 29.60 -169.99 -5.03 13.01 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 24 C -0.23 -5.49 9.80 -38.88 -0.38 -5.87 16 25 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 26 H 0.06 0.43 7.82 -51.93 -0.41 0.02 16 27 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.38 2.66 9.05 45.56 0.41 3.07 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.78 7.69 -51.93 -0.40 0.38 16 34 H 0.41 4.61 8.62 -34.47 -0.30 4.31 16 35 H 0.12 1.66 8.08 -51.92 -0.42 1.24 16 36 H 0.12 1.53 8.08 -51.93 -0.42 1.11 16 37 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 38 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 39 H 0.29 6.56 8.30 -40.82 -0.34 6.22 16 40 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 41 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -33.20 359.32 -10.07 -43.28 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -5.21 Total: 11.44 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: -2.72 Total: -36.51 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.55 Total: -32.86 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -2.50 Total: -47.47 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 16 Polarization: 44.28 SS G_CDS: -0.59 Total: 43.70 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.20 -10.07 -43.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592055128.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.681 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds