Wall clock time and date at job start Fri Apr 10 2020 18:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47151 * 2 1 4 4 H 1.08996 * 109.47204 * 305.00207 * 3 2 1 5 5 O 1.42902 * 109.46781 * 65.00183 * 3 2 1 6 6 C 1.52999 * 109.47250 * 184.99889 * 3 2 1 7 7 N 1.46495 * 109.47042 * 180.02562 * 6 3 2 8 8 S 1.65603 * 119.99786 * 164.99961 * 7 6 3 9 9 O 1.42100 * 104.27742 * 308.93042 * 8 7 6 10 10 O 1.42104 * 104.27669 * 181.07201 * 8 7 6 11 11 C 1.81401 * 104.44856 * 65.00185 * 8 7 6 12 12 C 1.50701 * 109.47410 * 179.97438 * 11 8 7 13 13 C 1.38632 * 119.74855 * 269.73244 * 12 11 8 14 14 C 1.37622 * 120.24185 * 179.71996 * 13 12 11 15 15 C 1.40711 * 119.74669 * 0.56508 * 14 13 12 16 16 C 1.41400 * 120.24519 * 179.68031 * 15 14 13 17 17 H 1.07993 * 120.00417 * 204.40825 * 16 15 14 18 18 C 1.39949 * 119.99722 * 24.41101 * 16 15 14 19 19 N 1.30829 * 120.00062 * 17.84366 * 18 16 15 20 20 Si 1.86798 * 120.00043 * 197.84420 * 18 16 15 21 21 H 1.48498 * 109.46821 * 90.00230 * 20 18 16 22 22 H 1.48501 * 109.47257 * 209.99803 * 20 18 16 23 23 H 1.48498 * 109.47318 * 330.00157 * 20 18 16 24 24 C 1.40712 * 119.51307 * 359.70755 * 15 14 13 25 25 C 1.37615 * 119.74605 * 359.97438 * 24 15 14 26 26 H 1.08998 * 109.47561 * 299.99706 * 1 2 3 27 27 H 1.09010 * 109.47191 * 59.99791 * 1 2 3 28 28 H 1.08999 * 109.47176 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46878 * 240.00248 * 2 1 3 30 30 H 1.08997 * 109.47325 * 120.00349 * 2 1 3 31 31 H 0.96696 * 114.00137 * 59.99707 * 5 3 2 32 32 H 1.09004 * 109.46847 * 60.00433 * 6 3 2 33 33 H 1.09004 * 109.47193 * 300.00575 * 6 3 2 34 34 H 0.97001 * 120.00359 * 345.00031 * 7 6 3 35 35 H 1.09007 * 109.47035 * 59.99678 * 11 8 7 36 36 H 1.08996 * 109.47205 * 300.00052 * 11 8 7 37 37 H 1.08000 * 119.87692 * 359.96552 * 13 12 11 38 38 H 1.08002 * 120.12182 * 180.27799 * 14 13 12 39 39 H 0.96994 * 119.99970 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.12698 * 179.97438 * 24 15 14 41 41 H 1.08000 * 119.87918 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4444 -0.1257 7 7 4.0531 2.8256 -0.1251 8 16 5.6607 3.1353 0.1242 9 8 5.9774 2.4137 1.3067 10 8 5.7550 4.5526 0.0833 11 6 6.4911 2.4004 -1.3115 12 6 7.9778 2.6201 -1.1989 13 6 8.5484 3.7581 -1.7477 14 6 9.9042 3.9718 -1.6458 15 6 10.7131 3.0241 -0.9919 16 6 12.1081 3.2297 -0.8871 17 1 12.7703 2.3861 -0.7604 18 6 12.6307 4.5266 -0.9474 19 7 11.8488 5.5568 -0.7501 20 14 14.4447 4.7867 -1.3097 21 1 14.6444 4.9051 -2.7764 22 1 14.9088 6.0309 -0.6449 23 1 15.2228 3.6310 -0.7958 24 6 10.1236 1.8700 -0.4437 25 6 8.7649 1.6802 -0.5517 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.0141 1.6542 2.0139 32 1 3.8531 0.9571 -1.0571 33 1 3.9994 0.9053 0.7161 34 1 3.4349 3.5587 -0.2706 35 1 6.1229 2.8698 -2.2238 36 1 6.2829 1.3310 -1.3437 37 1 7.9263 4.4815 -2.2537 38 1 10.3461 4.8612 -2.0702 39 1 12.2111 6.4556 -0.7915 40 1 10.7352 1.1360 0.0599 41 1 8.3102 0.7954 -0.1313 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592055128.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:11 Heat of formation + Delta-G solvation = -151.625811 kcal Electronic energy + Delta-G solvation = -23516.694072 eV Core-core repulsion = 19907.433177 eV Total energy + Delta-G solvation = -3609.260895 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.58702 -39.21571 -38.06816 -36.91814 -35.95500 -35.36184 -33.61165 -33.21451 -31.28491 -29.54084 -28.89518 -25.98779 -24.20449 -23.02581 -22.45251 -22.09508 -20.23851 -19.30368 -18.63711 -17.88534 -17.47310 -17.19296 -16.86424 -16.65966 -16.05062 -15.81853 -15.65495 -15.50229 -15.17536 -14.54293 -14.35922 -13.91253 -13.72723 -13.69248 -13.51782 -13.28829 -13.10911 -13.05029 -13.03324 -12.89693 -12.78111 -12.73394 -12.69947 -12.20695 -11.94936 -11.78034 -11.68029 -11.55195 -11.35468 -11.05056 -10.91158 -10.36215 -9.47719 -9.27906 -8.71792 -6.41527 -0.72319 0.87722 1.06202 1.37391 1.50188 1.51919 1.91863 2.17601 2.62574 2.91836 3.26849 3.54104 3.64537 3.71003 3.80187 4.01058 4.06804 4.18398 4.41695 4.43567 4.46918 4.51385 4.66021 4.73197 4.83521 4.93232 4.99102 5.06131 5.08268 5.17308 5.25227 5.34064 5.35416 5.45958 5.60672 5.83195 6.01686 6.03711 6.12018 6.27738 6.60218 6.83660 6.84289 6.92596 8.24939 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.040081 B = 0.002679 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.417068 B =10450.382739 C =10724.740309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.153 4.153 3 C 0.103 3.897 4 H 0.110 0.890 5 O -0.576 6.576 6 C 0.068 3.932 7 N -1.108 6.108 8 S 2.598 3.402 9 O -0.998 6.998 10 O -1.007 7.007 11 C -0.520 4.520 12 C -0.233 4.233 13 C -0.093 4.093 14 C -0.196 4.196 15 C 0.084 3.916 16 C -0.488 4.488 17 H 0.083 0.917 18 C 0.031 3.969 19 N -0.819 5.819 20 Si 0.989 3.011 21 H -0.260 1.260 22 H -0.269 1.269 23 H -0.255 1.255 24 C -0.245 4.245 25 C -0.076 4.076 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.385 0.615 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.421 0.579 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.292 0.708 40 H 0.106 0.894 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.623 -9.735 -2.753 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.192 4.192 3 C 0.043 3.957 4 H 0.128 0.872 5 O -0.383 6.383 6 C -0.058 4.058 7 N -0.869 5.869 8 S 2.698 3.302 9 O -0.988 6.988 10 O -0.997 6.997 11 C -0.652 4.652 12 C -0.237 4.237 13 C -0.113 4.113 14 C -0.215 4.215 15 C 0.081 3.919 16 C -0.517 4.517 17 H 0.102 0.898 18 C -0.185 4.185 19 N -0.444 5.444 20 Si 0.809 3.191 21 H -0.184 1.184 22 H -0.193 1.193 23 H -0.179 1.179 24 C -0.265 4.265 25 C -0.095 4.095 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.234 0.766 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.257 0.743 35 H 0.172 0.828 36 H 0.178 0.822 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.545 -8.766 -2.308 19.748 hybrid contribution 0.935 0.131 -0.202 0.965 sum -16.610 -8.635 -2.510 18.888 Atomic orbital electron populations 1.21689 0.95053 1.01899 1.01963 1.22200 0.97123 0.95555 1.04304 1.22242 0.90971 0.94471 0.88054 0.87241 1.86548 1.76898 1.58303 1.16550 1.22408 0.97469 0.81610 1.04283 1.55288 1.25919 1.14741 1.90985 1.05418 0.73742 0.73610 0.77446 1.93480 1.84077 1.75101 1.46126 1.93501 1.86046 1.31856 1.88279 1.28978 1.02344 1.14806 1.19062 1.18549 0.92357 0.99339 1.13489 1.20949 0.95021 0.96388 0.98913 1.21344 0.93594 1.01757 1.04838 1.18106 0.94192 0.91534 0.88105 1.19981 0.92790 0.94049 1.44916 0.89847 1.26926 1.05608 0.94842 0.91143 1.69888 1.40256 1.00819 1.33456 0.85095 0.75533 0.78895 0.79551 1.18407 1.19308 1.17877 1.21236 0.95067 1.01493 1.08699 1.20882 0.93570 0.97965 0.97058 0.93134 0.92641 0.91974 0.89078 0.90720 0.76568 0.87865 0.90250 0.74320 0.82815 0.82150 0.86893 0.87624 0.89756 0.87567 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.81 71.98 0.71 -0.78 16 2 C -0.15 -1.38 5.61 30.59 0.17 -1.21 16 3 C 0.10 1.29 3.06 30.60 0.09 1.39 16 4 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 5 O -0.58 -9.67 12.74 -148.98 -1.90 -11.57 16 6 C 0.07 1.00 5.80 86.38 0.50 1.50 16 7 N -1.11 -23.34 5.75 -187.49 -1.08 -24.42 16 8 S 2.60 83.28 5.44 -56.49 -0.31 82.97 16 9 O -1.00 -38.49 17.50 -127.65 -2.23 -40.72 16 10 O -1.01 -41.52 18.08 -127.65 -2.31 -43.83 16 11 C -0.52 -14.72 6.19 71.24 0.44 -14.28 16 12 C -0.23 -9.66 5.16 -19.67 -0.10 -9.76 16 13 C -0.09 -4.38 9.67 22.22 0.21 -4.16 16 14 C -0.20 -10.50 8.70 22.73 0.20 -10.31 16 15 C 0.08 4.57 5.57 -21.29 -0.12 4.45 16 16 C -0.49 -26.28 9.05 23.46 0.21 -26.06 16 17 H 0.08 4.26 7.91 -2.91 -0.02 4.24 16 18 C 0.03 1.56 5.14 85.26 0.44 1.99 16 19 N -0.82 -43.51 10.95 21.83 0.24 -43.27 16 20 Si 0.99 37.85 29.60 68.60 2.03 39.88 16 21 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 24 C -0.25 -12.09 9.80 22.73 0.22 -11.87 16 25 C -0.08 -3.27 9.67 22.22 0.21 -3.05 16 26 H 0.05 0.62 7.82 -2.39 -0.02 0.60 16 27 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.39 4.79 9.05 -74.06 -0.67 4.12 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 1.24 7.69 -2.38 -0.02 1.23 16 34 H 0.42 8.22 8.62 -96.74 -0.83 7.39 16 35 H 0.15 3.46 8.08 -2.39 -0.02 3.44 16 36 H 0.16 3.22 8.08 -2.39 -0.02 3.20 16 37 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.11 5.89 6.16 -2.91 -0.02 5.87 16 39 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 40 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 41 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -75.32 359.32 -2.82 -78.14 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.46 Total: 34.97 kcal Atomic # 6 Polarization: -75.33 SS G_CDS: 3.19 Total: -72.14 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -0.84 Total: -67.69 kcal Atomic # 8 Polarization: -89.69 SS G_CDS: -6.44 Total: -96.12 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Atomic # 16 Polarization: 83.28 SS G_CDS: -0.31 Total: 82.97 kcal Total: -75.32 -2.82 -78.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592055128.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.490 kcal (2) G-P(sol) polarization free energy of solvation -75.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds