Wall clock time and date at job start Fri Apr 10 2020 18:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47220 * 2 1 4 4 N 1.30498 * 125.65400 * 89.97538 * 3 2 1 5 5 C 1.34126 * 109.26191 * 180.02562 * 4 3 2 6 6 S 1.76204 * 125.99088 * 179.97438 * 5 4 3 7 7 O 1.42093 * 106.40105 * 23.54175 * 6 5 4 8 8 O 1.42104 * 106.39812 * 156.45625 * 6 5 4 9 9 N 1.65596 * 107.21907 * 269.99626 * 6 5 4 10 10 C 1.46495 * 120.00078 * 270.00598 * 9 6 5 11 11 C 1.36938 * 119.99675 * 89.99921 * 9 6 5 12 12 H 1.07995 * 120.00298 * 22.31608 * 11 9 6 13 13 C 1.38816 * 119.99935 * 202.30917 * 11 9 6 14 14 N 1.31620 * 119.99802 * 11.15148 * 13 11 9 15 15 Si 1.86799 * 120.00042 * 191.15370 * 13 11 9 16 16 H 1.48493 * 109.47222 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47102 * 120.00059 * 15 13 11 18 18 H 1.48505 * 109.46993 * 239.99912 * 15 13 11 19 19 C 1.34667 * 108.01664 * 359.97438 * 5 4 3 20 20 N 1.35050 * 125.65287 * 270.28279 * 3 2 1 21 21 C 1.46497 * 126.39401 * 0.02562 * 20 3 2 22 22 C 1.53007 * 109.47108 * 85.14202 * 21 20 3 23 23 C 1.52995 * 117.50414 * 243.62361 * 22 21 20 24 24 C 1.52998 * 117.50133 * 174.99527 * 22 21 20 25 25 H 1.09006 * 109.46743 * 60.00198 * 1 2 3 26 26 H 1.08992 * 109.47638 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47540 * 300.00680 * 1 2 3 28 28 H 1.08993 * 109.47109 * 239.99471 * 2 1 3 29 29 H 1.09006 * 109.46743 * 119.99802 * 2 1 3 30 30 H 1.09001 * 109.47859 * 94.21701 * 10 9 6 31 31 H 1.09009 * 109.46845 * 214.21958 * 10 9 6 32 32 H 1.09001 * 109.46915 * 334.21103 * 10 9 6 33 33 H 0.97003 * 119.99888 * 179.97438 * 14 13 11 34 34 H 1.08007 * 126.58799 * 179.97438 * 19 5 4 35 35 H 1.08993 * 109.47431 * 205.14332 * 21 20 3 36 36 H 1.09003 * 109.47339 * 325.14892 * 21 20 3 37 37 H 1.09000 * 115.54563 * 29.33611 * 22 21 20 38 38 H 1.09001 * 117.49275 * 359.97438 * 23 22 21 39 39 H 1.09001 * 117.49963 * 145.01790 * 23 22 21 40 40 H 1.08997 * 117.50015 * 214.98541 * 24 22 21 41 41 H 1.09004 * 117.49674 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2855 2.1380 1.0604 5 6 2.7140 3.3513 0.6818 6 16 3.1780 4.6677 1.7574 7 8 3.5426 4.0671 2.9924 8 8 4.0517 5.5052 1.0126 9 7 1.8156 5.5605 2.0556 10 6 1.4713 6.6853 1.1824 11 6 1.0108 5.2472 3.1182 12 1 1.4102 4.6892 3.9521 13 6 -0.3186 5.6470 3.1237 14 7 -0.8652 6.1294 2.0278 15 14 -1.3315 5.5005 4.6863 16 1 -0.4904 4.9321 5.7700 17 1 -1.8171 6.8447 5.0893 18 1 -2.4927 4.6076 4.4416 19 6 2.7275 3.3871 -0.6643 20 7 2.2896 2.1647 -1.0974 21 6 2.1321 1.7414 -2.4910 22 6 0.6837 1.9641 -2.9310 23 6 -0.1378 0.7298 -3.3084 24 6 0.3410 1.6922 -4.3971 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.7805 6.3476 0.4099 31 1 1.0006 7.4721 1.7721 32 1 2.3767 7.0734 0.7158 33 1 -1.7942 6.4084 2.0315 34 1 3.0221 4.2217 -1.2832 35 1 2.7985 2.3254 -3.1256 36 1 2.3802 0.6837 -2.5798 37 1 0.1628 2.7837 -2.4361 38 1 0.3538 -0.2409 -3.2435 39 1 -1.1994 0.7370 -3.0615 40 1 -0.4056 2.3327 -4.8666 41 1 1.1476 1.3552 -5.0484 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596044762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:39 Heat of formation + Delta-G solvation = 15.552982 kcal Electronic energy + Delta-G solvation = -25034.962329 eV Core-core repulsion = 21465.243601 eV Total energy + Delta-G solvation = -3569.718727 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.71945 -37.80857 -35.66200 -35.51816 -34.27029 -33.59898 -33.26882 -31.32394 -28.48925 -27.12882 -26.32585 -23.73345 -23.37212 -22.71891 -21.67615 -21.07176 -19.37213 -18.34102 -17.55575 -16.76685 -16.27138 -15.74593 -15.33564 -15.05391 -14.57135 -14.41107 -14.29474 -14.03588 -13.86699 -13.24356 -13.10522 -12.94849 -12.59791 -12.27606 -11.92147 -11.85557 -11.70120 -11.45104 -11.28122 -11.11359 -10.96353 -10.92613 -10.75870 -10.61627 -10.47423 -10.35755 -10.22946 -10.09643 -9.98097 -9.36044 -9.29506 -9.16552 -8.14424 -7.95637 -6.41168 -3.89141 1.87554 2.27104 2.90681 3.19249 3.24398 3.32182 3.35696 3.47691 4.12813 4.33896 4.48765 4.59621 4.62166 4.74494 4.81521 4.93265 4.94954 5.09227 5.18651 5.27385 5.32107 5.33488 5.40526 5.55917 5.59104 5.71865 5.79476 5.84390 5.92052 6.04811 6.32442 6.34197 6.49935 6.58325 6.92229 6.95889 7.18310 7.41218 7.50188 7.57209 8.43066 8.50069 8.80971 9.27401 10.56230 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.005275 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.951350 B = 5306.446307 C = 5928.782813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.030 4.030 3 C 0.190 3.810 4 N -0.407 5.407 5 C -0.522 4.522 6 S 2.575 3.425 7 O -0.973 6.973 8 O -1.007 7.007 9 N -0.809 5.809 10 C 0.124 3.876 11 C -0.240 4.240 12 H 0.116 0.884 13 C 0.030 3.970 14 N -0.848 5.848 15 Si 0.926 3.074 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.280 1.280 19 C 0.032 3.968 20 N -0.454 5.454 21 C 0.135 3.865 22 C -0.175 4.175 23 C -0.172 4.172 24 C -0.170 4.170 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.270 0.730 34 H 0.181 0.819 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 -8.869 -12.377 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.069 4.069 3 C -0.074 4.074 4 N -0.124 5.124 5 C -0.726 4.726 6 S 2.669 3.331 7 O -0.962 6.962 8 O -0.996 6.996 9 N -0.635 5.635 10 C -0.022 4.022 11 C -0.386 4.386 12 H 0.134 0.866 13 C -0.181 4.181 14 N -0.489 5.489 15 Si 0.752 3.248 16 H -0.185 1.185 17 H -0.204 1.204 18 H -0.206 1.206 19 C -0.105 4.105 20 N -0.137 5.137 21 C 0.012 3.988 22 C -0.194 4.194 23 C -0.209 4.209 24 C -0.207 4.207 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.198 0.802 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.595 -9.069 -11.619 14.751 hybrid contribution -1.112 -0.252 -0.976 1.501 sum -1.707 -9.321 -12.596 15.762 Atomic orbital electron populations 1.21834 0.94036 1.01726 1.03371 1.19847 0.96471 0.87427 1.03165 1.23544 1.05269 0.96818 0.81786 1.70315 1.13314 1.01831 1.26926 1.35234 1.16714 1.13132 1.07510 1.09789 0.78077 0.71936 0.73319 1.93351 1.83447 1.77383 1.42063 1.93339 1.66557 1.65930 1.73735 1.53966 1.46404 1.31311 1.31782 1.21278 0.97614 0.89034 0.94302 1.20020 0.91822 1.33536 0.93199 0.86647 1.25689 0.96764 0.97078 0.98531 1.70119 1.13556 1.38620 1.26601 0.85842 0.79452 0.78151 0.81367 1.18499 1.20389 1.20577 1.22538 1.03255 0.89067 0.95607 1.45515 1.49283 1.12125 1.06791 1.21393 0.95764 1.01560 0.80106 1.22690 0.95950 1.01725 0.99009 1.23075 1.00651 0.94214 1.02975 1.22975 1.03631 1.03289 0.90850 0.92188 0.92151 0.91555 0.91250 0.88970 0.93229 0.90761 0.93936 0.91994 0.80223 0.88670 0.89143 0.86767 0.88512 0.88405 0.88332 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.89 37.16 0.37 -1.53 16 2 C -0.03 -0.40 6.24 -27.89 -0.17 -0.58 16 3 C 0.19 3.49 7.16 -155.41 -1.11 2.37 16 4 N -0.41 -9.47 11.25 -10.02 -0.11 -9.58 16 5 C -0.52 -12.20 7.13 -17.81 -0.13 -12.33 16 6 S 2.58 65.65 5.81 -107.50 -0.62 65.03 16 7 O -0.97 -27.64 16.81 -57.17 -0.96 -28.60 16 8 O -1.01 -25.73 16.40 -57.17 -0.94 -26.66 16 9 N -0.81 -20.80 3.31 -66.69 -0.22 -21.02 16 10 C 0.12 2.90 8.92 59.84 0.53 3.43 16 11 C -0.24 -6.41 9.45 -15.06 -0.14 -6.55 16 12 H 0.12 3.15 7.16 -52.49 -0.38 2.78 16 13 C 0.03 0.75 5.13 -17.43 -0.09 0.66 16 14 N -0.85 -21.57 10.57 55.49 0.59 -20.98 16 15 Si 0.93 19.84 29.57 -169.99 -5.03 14.82 16 16 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 17 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 C 0.03 0.62 11.31 -16.57 -0.19 0.43 16 20 N -0.45 -7.45 2.75 -113.91 -0.31 -7.77 16 21 C 0.13 1.49 6.17 -4.04 -0.02 1.46 16 22 C -0.17 -1.83 5.60 -90.62 -0.51 -2.34 16 23 C -0.17 -1.44 8.36 -26.73 -0.22 -1.67 16 24 C -0.17 -1.33 10.25 -26.73 -0.27 -1.61 16 25 H 0.06 0.73 5.70 -51.93 -0.30 0.43 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.72 7.17 -51.93 -0.37 0.34 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 1.16 7.42 -51.93 -0.39 0.78 16 31 H 0.07 1.75 7.18 -51.92 -0.37 1.37 16 32 H 0.04 0.91 6.93 -51.93 -0.36 0.55 16 33 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 34 H 0.18 3.02 8.06 -52.48 -0.42 2.60 16 35 H 0.10 0.90 8.13 -51.93 -0.42 0.47 16 36 H 0.09 0.81 6.94 -51.93 -0.36 0.45 16 37 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.10 0.70 8.03 -51.93 -0.42 0.28 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 351.44 15.07 5.30 5.30 Total: -1.00 -33.99 351.44 -10.15 -44.14 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.88 Total: 3.56 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -1.96 Total: -18.23 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.06 Total: -59.35 kcal Atomic # 8 Polarization: -53.36 SS G_CDS: -1.90 Total: -55.26 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.82 kcal Atomic # 16 Polarization: 65.65 SS G_CDS: -0.62 Total: 65.03 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.99 -10.15 -44.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596044762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.697 kcal (2) G-P(sol) polarization free energy of solvation -33.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds