Wall clock time and date at job start Fri Apr 10 2020 18:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47028 * 240.00365 * 3 2 1 5 5 H 1.48502 * 109.47105 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47413 * 120.00329 * 3 2 1 7 7 C 1.39928 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99920 * 196.78511 * 7 2 1 9 9 C 1.41412 * 120.00296 * 16.78627 * 7 2 1 10 10 C 1.40787 * 120.20610 * 205.14536 * 9 7 2 11 11 C 1.37647 * 119.88890 * 180.02562 * 10 9 7 12 12 C 1.38531 * 120.32151 * 359.74579 * 11 10 9 13 13 C 1.39277 * 120.42826 * 0.51195 * 12 11 10 14 14 N 1.39826 * 119.94966 * 179.76342 * 13 12 11 15 15 C 1.34776 * 120.00166 * 325.52790 * 14 13 12 16 16 O 1.21638 * 120.00007 * 354.89969 * 15 14 13 17 17 C 1.47274 * 120.00159 * 174.89643 * 15 14 13 18 18 N 1.30691 * 125.44521 * 359.97438 * 17 15 14 19 19 N 1.39113 * 108.45409 * 180.16845 * 18 17 15 20 20 C 1.46627 * 129.39267 * 178.91777 * 19 18 17 21 21 C 1.53673 * 107.25269 * 205.08471 * 20 19 18 22 22 C 1.52938 * 109.60718 * 307.61835 * 21 20 19 23 23 N 1.46744 * 110.52314 * 57.49369 * 22 21 20 24 24 C 1.30631 * 119.19051 * 328.36420 * 23 22 21 25 25 N 1.36257 * 129.73341 * 182.13398 * 24 23 22 26 26 C 1.38310 * 120.09652 * 359.48777 * 13 12 11 27 27 H 0.97006 * 119.99633 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.05451 * 0.02562 * 10 9 7 29 29 H 1.07994 * 119.84117 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.78354 * 180.27569 * 12 11 10 31 31 H 0.97000 * 119.99763 * 145.53510 * 14 13 12 32 32 H 1.08999 * 109.89640 * 324.52140 * 20 19 18 33 33 H 1.09007 * 109.89818 * 85.57058 * 20 19 18 34 34 H 1.09006 * 109.45096 * 67.66139 * 21 20 19 35 35 H 1.09006 * 109.44941 * 187.58025 * 21 20 19 36 36 H 1.09003 * 109.27005 * 177.76400 * 22 21 20 37 37 H 1.09000 * 109.27043 * 297.26184 * 22 21 20 38 38 H 0.96999 * 126.08090 * 358.61929 * 25 24 23 39 39 H 1.07997 * 120.15802 * 180.22816 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0962 1.6963 1.2124 7 6 2.0078 -1.2119 -0.0005 8 1 3.0534 -1.2320 0.2696 9 6 1.3459 -2.4103 -0.3548 10 6 1.8186 -3.6479 0.1216 11 6 1.1696 -4.8105 -0.2277 12 6 0.0497 -4.7687 -1.0420 13 6 -0.4262 -3.5521 -1.5250 14 7 -1.5546 -3.5220 -2.3503 15 6 -1.7791 -4.5252 -3.2218 16 8 -0.9545 -5.4092 -3.3572 17 6 -3.0227 -4.5513 -4.0103 18 7 -3.9773 -3.6607 -3.9497 19 7 -4.9824 -4.0315 -4.8372 20 6 -6.2634 -3.3761 -5.1188 21 6 -7.2214 -4.4557 -5.6465 22 6 -6.5624 -5.2043 -6.8059 23 7 -5.2902 -5.7976 -6.3784 24 6 -4.5825 -5.1947 -5.4607 25 7 -3.3690 -5.5274 -4.9380 26 6 0.2123 -2.3733 -1.1851 27 1 -0.4850 0.8401 0.0004 28 1 2.6889 -3.6851 0.7599 29 1 1.5326 -5.7594 0.1384 30 1 -0.4555 -5.6858 -1.3070 31 1 -2.1758 -2.7790 -2.2955 32 1 -6.6650 -2.9384 -4.2049 33 1 -6.1256 -2.6004 -5.8721 34 1 -7.4530 -5.1582 -4.8458 35 1 -8.1416 -3.9860 -5.9941 36 1 -7.2301 -5.9943 -7.1499 37 1 -6.3771 -4.5085 -7.6243 38 1 -2.8407 -6.3067 -5.1716 39 1 -0.1580 -1.4291 -1.5561 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597750708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:52 Heat of formation + Delta-G solvation = 73.726509 kcal Electronic energy + Delta-G solvation = -24659.150909 eV Core-core repulsion = 20988.803575 eV Total energy + Delta-G solvation = -3670.347334 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.22535 -41.28689 -39.10188 -38.07867 -36.25190 -35.31659 -35.02515 -32.32076 -31.86906 -31.44443 -30.22343 -27.23848 -26.82477 -25.22023 -24.38071 -23.18455 -22.73973 -21.46570 -20.67831 -19.58009 -19.19305 -18.50759 -17.70209 -17.58354 -16.77436 -16.72301 -16.55100 -16.38519 -15.85789 -15.81176 -14.99899 -14.91793 -14.71075 -14.54184 -14.24681 -14.15678 -13.52441 -13.13933 -13.05471 -12.84525 -12.79434 -12.62330 -12.46265 -12.39220 -12.09928 -11.97491 -11.59552 -11.48315 -11.21656 -11.10641 -10.86762 -10.29696 -9.33040 -8.94511 -8.71388 -8.55740 -6.33862 -0.23088 0.80587 0.87790 1.05803 1.13381 1.30332 1.42722 1.52046 1.56325 1.87767 2.23934 2.38423 2.76144 2.93245 3.50581 3.71166 3.72606 3.84540 3.99885 4.16529 4.45593 4.48937 4.51296 4.59537 4.65403 4.70621 4.80017 4.97123 5.00353 5.09479 5.14009 5.16994 5.33193 5.36041 5.68980 5.75994 5.84654 6.01074 6.09163 6.19732 6.38089 6.48107 6.63379 6.82097 6.95119 6.98842 7.01701 8.35236 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.003026 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.651361 B = 9251.329553 C =10411.334660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.496 4.496 8 H 0.078 0.922 9 C 0.092 3.908 10 C -0.241 4.241 11 C -0.082 4.082 12 C -0.236 4.236 13 C 0.146 3.854 14 N -0.628 5.628 15 C 0.602 3.398 16 O -0.527 6.527 17 C 0.243 3.757 18 N -0.232 5.232 19 N -0.470 5.470 20 C 0.145 3.855 21 C -0.154 4.154 22 C 0.066 3.934 23 N -0.645 5.645 24 C 0.545 3.455 25 N -0.607 5.607 26 C -0.194 4.194 27 H 0.289 0.711 28 H 0.104 0.896 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.422 0.578 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.453 0.547 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.332 -2.609 -9.531 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.525 4.525 8 H 0.096 0.904 9 C 0.089 3.911 10 C -0.261 4.261 11 C -0.100 4.100 12 C -0.257 4.257 13 C 0.054 3.946 14 N -0.272 5.272 15 C 0.385 3.615 16 O -0.401 6.401 17 C -0.039 4.039 18 N -0.058 5.058 19 N -0.283 5.283 20 C 0.026 3.974 21 C -0.194 4.194 22 C -0.063 4.063 23 N -0.391 5.391 24 C 0.180 3.820 25 N -0.246 5.246 26 C -0.216 4.216 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.142 0.858 30 H 0.127 0.873 31 H 0.260 0.740 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.151 0.849 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.298 0.702 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.481 -2.772 -9.689 17.643 hybrid contribution 0.341 0.631 0.105 0.725 sum -14.141 -2.142 -9.583 17.216 Atomic orbital electron populations 1.69831 1.08708 1.30622 1.35364 1.26668 0.95558 1.04187 0.91243 0.85292 0.78841 0.75949 0.79889 1.18816 1.19177 1.18547 1.19773 0.98091 0.92099 1.42563 0.90407 1.17747 0.91306 0.93220 0.88835 1.21265 1.04547 0.92949 1.07349 1.20744 0.94884 0.97574 0.96822 1.20499 1.02426 0.95575 1.07154 1.17567 0.88514 0.94856 0.93690 1.43002 1.24990 1.23590 1.35664 1.16410 0.82967 0.82918 0.79248 1.90890 1.44984 1.37850 1.66333 1.23004 0.96313 0.88972 0.95597 1.76765 0.96785 1.20017 1.12233 1.49743 1.17830 1.24124 1.36632 1.22235 0.76221 0.95703 1.03273 1.22391 0.99656 0.98108 0.99205 1.21957 0.89062 0.98651 0.96652 1.72913 1.12684 1.33003 1.20523 1.20127 0.86569 0.84626 0.90636 1.42057 1.17993 1.26519 1.38023 1.21016 1.00382 0.95561 1.04606 0.90021 0.87823 0.85807 0.87261 0.73995 0.87134 0.88570 0.91560 0.84902 0.88257 0.91319 0.70249 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.35 10.94 21.82 0.24 -40.11 16 2 C 0.04 1.88 5.16 85.25 0.44 2.32 16 3 Si 0.98 36.75 29.59 68.60 2.03 38.78 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 6 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.50 -25.80 9.05 23.46 0.21 -25.59 16 8 H 0.08 3.91 7.90 -2.91 -0.02 3.88 16 9 C 0.09 4.82 5.57 -21.31 -0.12 4.70 16 10 C -0.24 -11.63 9.79 22.75 0.22 -11.41 16 11 C -0.08 -3.60 10.02 22.20 0.22 -3.38 16 12 C -0.24 -10.58 8.66 22.59 0.20 -10.38 16 13 C 0.15 6.60 6.24 38.13 0.24 6.84 16 14 N -0.63 -23.35 5.33 -306.72 -1.63 -24.98 16 15 C 0.60 21.01 7.54 86.62 0.65 21.67 16 16 O -0.53 -20.85 14.83 -4.15 -0.06 -20.91 16 17 C 0.24 7.16 8.02 135.71 1.09 8.25 16 18 N -0.23 -6.44 12.21 -50.60 -0.62 -7.06 16 19 N -0.47 -11.30 4.12 -348.46 -1.43 -12.73 16 20 C 0.14 2.16 7.42 86.58 0.64 2.80 16 21 C -0.15 -1.82 6.12 30.80 0.19 -1.63 16 22 C 0.07 1.10 7.08 86.31 0.61 1.71 16 23 N -0.65 -16.14 11.08 -349.41 -3.87 -20.01 16 24 C 0.54 14.22 8.73 260.81 2.28 16.50 16 25 N -0.61 -16.11 6.22 -189.11 -1.18 -17.29 16 26 C -0.19 -9.74 8.60 22.86 0.20 -9.54 16 27 H 0.29 12.85 8.30 -92.70 -0.77 12.08 16 28 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 29 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 30 H 0.11 4.72 6.47 -2.91 -0.02 4.70 16 31 H 0.42 14.10 8.48 -92.71 -0.79 13.32 16 32 H 0.11 1.35 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.45 10.71 8.96 -92.71 -0.83 9.87 16 39 H 0.11 5.88 6.17 -2.91 -0.02 5.86 16 Total: -1.00 -62.85 334.87 0.05 -62.80 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: -0.49 Total: 38.65 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 7.07 Total: 2.86 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -8.49 Total: -122.18 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.06 Total: -20.91 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Total: -62.85 0.05 -62.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597750708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.524 kcal (2) G-P(sol) polarization free energy of solvation -62.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds