Wall clock time and date at job start Fri Apr 10 2020 18:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47731 * 2 1 4 4 C 1.46505 * 119.99978 * 274.01576 * 3 2 1 5 5 C 1.50696 * 109.47158 * 280.98155 * 4 3 2 6 6 H 1.08006 * 119.99801 * 3.16192 * 5 4 3 7 7 C 1.37877 * 120.00173 * 183.16321 * 5 4 3 8 8 N 1.31513 * 120.00178 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46752 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46952 * 119.99760 * 9 7 5 12 12 H 1.48500 * 109.46715 * 239.99631 * 9 7 5 13 13 S 1.65596 * 120.00384 * 94.00731 * 3 2 1 14 14 O 1.42095 * 106.40227 * 336.22398 * 13 3 2 15 15 O 1.42094 * 106.40689 * 203.29735 * 13 3 2 16 16 N 1.65606 * 107.21353 * 89.75557 * 13 3 2 17 17 C 1.46503 * 119.99838 * 65.59575 * 16 13 3 18 18 C 1.50701 * 109.46965 * 164.28224 * 17 16 13 19 19 C 1.38669 * 120.42213 * 259.99730 * 18 17 16 20 20 C 1.38624 * 118.42405 * 179.75390 * 19 18 17 21 21 C 1.38231 * 119.15868 * 0.25299 * 20 19 18 22 22 N 1.31852 * 120.76401 * 0.02562 * 21 20 19 23 23 C 1.31890 * 121.72899 * 359.97438 * 22 21 20 24 24 C 1.50695 * 119.62241 * 179.97438 * 23 22 21 25 25 H 1.08998 * 109.46782 * 65.04997 * 1 2 3 26 26 H 1.08999 * 109.47426 * 185.04957 * 1 2 3 27 27 H 1.09001 * 109.46846 * 305.05456 * 1 2 3 28 28 H 1.09004 * 109.47156 * 240.00079 * 2 1 3 29 29 H 1.08997 * 109.47164 * 120.00179 * 2 1 3 30 30 H 1.09000 * 109.47232 * 40.98281 * 4 3 2 31 31 H 1.08996 * 109.47172 * 160.97895 * 4 3 2 32 32 H 0.96996 * 120.00276 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00018 * 245.58628 * 16 13 3 34 34 H 1.09002 * 109.46911 * 44.28380 * 17 16 13 35 35 H 1.08996 * 109.47074 * 284.28274 * 17 16 13 36 36 H 1.07999 * 120.78754 * 0.02562 * 19 18 17 37 37 H 1.07997 * 120.42066 * 180.27065 * 20 19 18 38 38 H 1.07998 * 119.61951 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47271 * 89.99646 * 24 23 22 40 40 H 1.08998 * 109.47059 * 210.00086 * 24 23 22 41 41 H 1.09006 * 109.46664 * 329.99480 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1789 2.1014 -1.2657 5 6 3.4585 1.6666 -1.9323 6 1 4.0634 0.8910 -1.4860 7 6 3.8572 2.2588 -3.1119 8 7 3.1204 3.2028 -3.6555 9 14 5.4431 1.7193 -3.9386 10 1 6.0825 0.6489 -3.1319 11 1 5.1418 1.2025 -5.2977 12 1 6.3659 2.8781 -4.0429 13 16 2.3890 2.1284 1.4305 14 8 1.6429 1.4593 2.4378 15 8 2.2921 3.5256 1.1904 16 7 3.9847 1.8178 1.7467 17 6 5.0243 2.3575 0.8668 18 6 6.3609 2.2729 1.5578 19 6 6.9060 3.3905 2.1715 20 6 8.1355 3.2647 2.7994 21 6 8.7751 2.0393 2.7883 22 7 8.2293 0.9990 2.1898 23 6 7.0614 1.0820 1.5827 24 6 6.4817 -0.1372 0.9130 25 1 -0.3633 0.4335 -0.9318 26 1 -0.3634 -1.0236 0.0904 27 1 -0.3633 0.5903 0.8413 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3352 1.8798 -1.9193 31 1 2.2163 3.1732 -1.0715 32 1 3.4006 3.6192 -4.4855 33 1 4.2309 1.2787 2.5146 34 1 4.8000 3.3988 0.6356 35 1 5.0552 1.7788 -0.0564 36 1 6.3830 4.3354 2.1644 37 1 8.5877 4.1131 3.2913 38 1 9.7330 1.9328 3.2756 39 1 5.8687 -0.6871 1.6270 40 1 5.8667 0.1706 0.0673 41 1 7.2907 -0.7770 0.5600 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599444997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:11 Heat of formation + Delta-G solvation = -50.127788 kcal Electronic energy + Delta-G solvation = -25220.722454 eV Core-core repulsion = 21648.155595 eV Total energy + Delta-G solvation = -3572.566859 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.32305 -36.71110 -36.09418 -35.46134 -35.23612 -32.95040 -32.77177 -31.70220 -29.95992 -27.78081 -26.70606 -25.67969 -23.19421 -22.52402 -21.75045 -21.52376 -18.88287 -17.27122 -17.03560 -16.64377 -16.56784 -16.21924 -15.78728 -15.21907 -14.70946 -14.41777 -14.10081 -13.79012 -13.41229 -13.23085 -13.03058 -12.95091 -12.67541 -12.34222 -12.11585 -12.08901 -11.99133 -11.80287 -11.71799 -11.48683 -11.35834 -11.18208 -11.10806 -10.97146 -10.56122 -10.41348 -10.07523 -9.84519 -9.74269 -9.41061 -9.03601 -8.82631 -8.57191 -8.09142 -6.18178 -4.25284 0.98693 1.24875 1.41527 3.19072 3.28509 3.29034 3.50229 3.83495 4.15901 4.29196 4.33531 4.73818 4.84918 4.92274 5.04659 5.11776 5.15861 5.40169 5.47643 5.54245 5.72382 5.73664 5.75813 5.78899 5.82898 5.99061 6.11704 6.14301 6.19093 6.32178 6.38852 6.43918 6.65498 6.68799 6.76691 7.23368 7.33931 7.41151 7.63499 7.79079 8.00578 8.08989 8.79335 9.40737 10.89486 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010424 B = 0.006786 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.363362 B = 4125.229626 C = 5690.155458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.991 5.991 4 C 0.242 3.758 5 C -0.541 4.541 6 H 0.065 0.935 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.283 1.283 13 S 2.786 3.214 14 O -0.999 6.999 15 O -0.980 6.980 16 N -1.126 6.126 17 C 0.158 3.842 18 C -0.139 4.139 19 C -0.058 4.058 20 C -0.184 4.184 21 C 0.099 3.901 22 N -0.489 5.489 23 C 0.143 3.857 24 C -0.113 4.113 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.265 0.735 33 H 0.407 0.593 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.152 0.848 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 -3.765 9.824 12.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.120 3.880 5 C -0.580 4.580 6 H 0.083 0.917 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.209 1.209 13 S 2.793 3.207 14 O -0.983 6.983 15 O -0.964 6.964 16 N -0.884 5.884 17 C 0.032 3.968 18 C -0.143 4.143 19 C -0.084 4.084 20 C -0.204 4.204 21 C -0.059 4.059 22 N -0.199 5.199 23 C 0.005 3.995 24 C -0.170 4.170 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.238 0.762 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.170 0.830 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.643 -3.785 10.015 12.102 hybrid contribution 0.966 0.258 -0.501 1.119 sum 6.609 -3.527 9.513 12.109 Atomic orbital electron populations 1.22200 0.97015 1.01321 1.02329 1.20963 0.93576 0.82807 1.02172 1.57715 1.78665 1.23091 1.23802 1.19225 0.97241 0.92553 0.78969 1.21545 1.07343 1.21371 1.07721 0.91671 1.24942 0.97006 0.94740 0.96981 1.69936 1.37900 1.24932 1.19513 0.86639 0.83500 0.78758 0.79779 1.19412 1.20885 1.20857 1.01736 0.72535 0.73713 0.72667 1.93550 1.69424 1.76610 1.58732 1.93573 1.85929 1.31247 1.85618 1.56042 1.25031 1.68451 1.38861 1.20348 0.82362 1.01399 0.92716 1.20871 0.98279 0.94314 1.00792 1.21646 0.94672 0.98759 0.93360 1.22096 0.96611 0.99414 1.02291 1.22705 0.99150 0.88495 0.95527 1.67553 1.11143 1.32231 1.08943 1.21250 0.89889 0.94808 0.93511 1.20877 1.01258 0.94154 1.00760 0.92160 0.92406 0.92702 0.89997 0.91990 0.94668 0.92782 0.92556 0.76163 0.89388 0.87638 0.84451 0.84922 0.83024 0.90298 0.89178 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.24 37.16 0.38 -2.21 16 2 C 0.13 2.16 6.01 -4.05 -0.02 2.13 16 3 N -0.99 -19.09 2.84 -115.67 -0.33 -19.41 16 4 C 0.24 5.61 5.48 -5.19 -0.03 5.58 16 5 C -0.54 -12.88 7.97 -34.44 -0.27 -13.15 16 6 H 0.07 1.46 6.73 -52.48 -0.35 1.11 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -24.11 13.29 55.43 0.74 -23.38 16 9 Si 0.89 19.58 29.54 -169.99 -5.02 14.55 16 10 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 13 S 2.79 52.49 6.11 -107.50 -0.66 51.83 16 14 O -1.00 -19.63 17.08 -57.17 -0.98 -20.60 16 15 O -0.98 -21.82 16.09 -57.17 -0.92 -22.74 16 16 N -1.13 -17.56 6.04 -11.65 -0.07 -17.63 16 17 C 0.16 2.56 5.70 -5.19 -0.03 2.53 16 18 C -0.14 -2.03 5.30 -104.48 -0.55 -2.58 16 19 C -0.06 -0.75 9.82 -39.28 -0.39 -1.13 16 20 C -0.18 -2.04 10.11 -39.44 -0.40 -2.44 16 21 C 0.10 1.17 11.18 -17.55 -0.20 0.97 16 22 N -0.49 -7.00 10.27 -9.47 -0.10 -7.10 16 23 C 0.14 2.08 6.78 -82.59 -0.56 1.52 16 24 C -0.11 -1.50 9.76 36.00 0.35 -1.15 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 28 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 29 H 0.06 0.90 7.65 -51.93 -0.40 0.51 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 1.40 6.83 -51.93 -0.35 1.04 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.41 5.43 8.65 -34.47 -0.30 5.14 16 34 H 0.09 1.54 7.61 -51.93 -0.40 1.14 16 35 H 0.11 1.86 3.87 -51.93 -0.20 1.66 16 36 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.28 6.12 -51.93 -0.32 0.96 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -30.71 353.18 -9.50 -40.21 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.67 Total: 7.28 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -1.82 Total: -8.34 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: 0.24 Total: -67.52 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -1.90 Total: -43.34 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 16 Polarization: 52.49 SS G_CDS: -0.66 Total: 51.83 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.71 -9.50 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599444997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.919 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds