Wall clock time and date at job start Fri Apr 10 2020 18:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47731 * 2 1 4 4 C 1.46505 * 119.99978 * 274.01576 * 3 2 1 5 5 C 1.50696 * 109.47158 * 280.98155 * 4 3 2 6 6 H 1.08006 * 119.99801 * 3.16192 * 5 4 3 7 7 C 1.37877 * 120.00173 * 183.16321 * 5 4 3 8 8 N 1.31513 * 120.00178 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46752 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46952 * 119.99760 * 9 7 5 12 12 H 1.48500 * 109.46715 * 239.99631 * 9 7 5 13 13 S 1.65596 * 120.00384 * 94.00731 * 3 2 1 14 14 O 1.42095 * 106.40227 * 336.22398 * 13 3 2 15 15 O 1.42094 * 106.40689 * 203.29735 * 13 3 2 16 16 N 1.65606 * 107.21353 * 89.75557 * 13 3 2 17 17 C 1.46503 * 119.99838 * 65.59575 * 16 13 3 18 18 C 1.50701 * 109.46965 * 164.28224 * 17 16 13 19 19 C 1.38669 * 120.42213 * 259.99730 * 18 17 16 20 20 C 1.38624 * 118.42405 * 179.75390 * 19 18 17 21 21 C 1.38231 * 119.15868 * 0.25299 * 20 19 18 22 22 N 1.31852 * 120.76401 * 0.02562 * 21 20 19 23 23 C 1.31890 * 121.72899 * 359.97438 * 22 21 20 24 24 C 1.50695 * 119.62241 * 179.97438 * 23 22 21 25 25 H 1.08998 * 109.46782 * 65.04997 * 1 2 3 26 26 H 1.08999 * 109.47426 * 185.04957 * 1 2 3 27 27 H 1.09001 * 109.46846 * 305.05456 * 1 2 3 28 28 H 1.09004 * 109.47156 * 240.00079 * 2 1 3 29 29 H 1.08997 * 109.47164 * 120.00179 * 2 1 3 30 30 H 1.09000 * 109.47232 * 40.98281 * 4 3 2 31 31 H 1.08996 * 109.47172 * 160.97895 * 4 3 2 32 32 H 0.96996 * 120.00276 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00018 * 245.58628 * 16 13 3 34 34 H 1.09002 * 109.46911 * 44.28380 * 17 16 13 35 35 H 1.08996 * 109.47074 * 284.28274 * 17 16 13 36 36 H 1.07999 * 120.78754 * 0.02562 * 19 18 17 37 37 H 1.07997 * 120.42066 * 180.27065 * 20 19 18 38 38 H 1.07998 * 119.61951 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47271 * 89.99646 * 24 23 22 40 40 H 1.08998 * 109.47059 * 210.00086 * 24 23 22 41 41 H 1.09006 * 109.46664 * 329.99480 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1789 2.1014 -1.2657 5 6 3.4585 1.6666 -1.9323 6 1 4.0634 0.8910 -1.4860 7 6 3.8572 2.2588 -3.1119 8 7 3.1204 3.2028 -3.6555 9 14 5.4431 1.7193 -3.9386 10 1 6.0825 0.6489 -3.1319 11 1 5.1418 1.2025 -5.2977 12 1 6.3659 2.8781 -4.0429 13 16 2.3890 2.1284 1.4305 14 8 1.6429 1.4593 2.4378 15 8 2.2921 3.5256 1.1904 16 7 3.9847 1.8178 1.7467 17 6 5.0243 2.3575 0.8668 18 6 6.3609 2.2729 1.5578 19 6 6.9060 3.3905 2.1715 20 6 8.1355 3.2647 2.7994 21 6 8.7751 2.0393 2.7883 22 7 8.2293 0.9990 2.1898 23 6 7.0614 1.0820 1.5827 24 6 6.4817 -0.1372 0.9130 25 1 -0.3633 0.4335 -0.9318 26 1 -0.3634 -1.0236 0.0904 27 1 -0.3633 0.5903 0.8413 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3352 1.8798 -1.9193 31 1 2.2163 3.1732 -1.0715 32 1 3.4006 3.6192 -4.4855 33 1 4.2309 1.2787 2.5146 34 1 4.8000 3.3988 0.6356 35 1 5.0552 1.7788 -0.0564 36 1 6.3830 4.3354 2.1644 37 1 8.5877 4.1131 3.2913 38 1 9.7330 1.9328 3.2756 39 1 5.8687 -0.6871 1.6270 40 1 5.8667 0.1706 0.0673 41 1 7.2907 -0.7770 0.5600 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599444997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:10 Heat of formation + Delta-G solvation = -71.864830 kcal Electronic energy + Delta-G solvation = -25221.665043 eV Core-core repulsion = 21648.155595 eV Total energy + Delta-G solvation = -3573.509448 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.32469 -38.32525 -37.66717 -36.88255 -36.71804 -34.64078 -33.91751 -32.83450 -31.48435 -28.80274 -28.47763 -26.85037 -24.90538 -23.57879 -23.24845 -22.56384 -20.38383 -18.77858 -18.59088 -18.31437 -17.72124 -17.39961 -17.13792 -16.72795 -16.18156 -15.64659 -15.46223 -15.02581 -14.79229 -14.62984 -14.45463 -13.99538 -13.93294 -13.74398 -13.60799 -13.34739 -13.31835 -13.24605 -13.15637 -13.02645 -12.98570 -12.73592 -12.63827 -12.33099 -12.24259 -12.04228 -11.67716 -11.54252 -10.76768 -10.55094 -10.44091 -10.37896 -9.85868 -9.69953 -8.12975 -6.24948 -0.34929 0.15960 0.32304 1.43313 1.47743 1.55991 2.04120 2.44500 2.61315 2.85832 3.20045 3.36930 3.47141 3.69936 3.90410 3.95954 4.03024 4.11167 4.37811 4.47634 4.53802 4.55276 4.69480 4.72689 4.74284 4.75940 4.84087 4.97743 5.03665 5.20484 5.23256 5.24930 5.33735 5.36845 5.45670 5.58373 5.79494 5.82217 5.91354 6.16213 6.17950 6.87789 7.02684 7.44646 8.95487 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010424 B = 0.006786 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.363362 B = 4125.229626 C = 5690.155458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.993 5.993 4 C 0.257 3.743 5 C -0.530 4.530 6 H 0.081 0.919 7 C 0.017 3.983 8 N -0.928 5.928 9 Si 0.944 3.056 10 H -0.251 1.251 11 H -0.285 1.285 12 H -0.287 1.287 13 S 2.800 3.200 14 O -1.004 7.004 15 O -1.017 7.017 16 N -1.109 6.109 17 C 0.165 3.835 18 C -0.156 4.156 19 C -0.069 4.069 20 C -0.174 4.174 21 C 0.097 3.903 22 N -0.509 5.509 23 C 0.131 3.869 24 C -0.112 4.112 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.017 0.983 31 H 0.022 0.978 32 H 0.263 0.737 33 H 0.419 0.581 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.145 0.855 37 H 0.168 0.832 38 H 0.186 0.814 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.853 -5.104 11.246 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.835 5.835 4 C 0.134 3.866 5 C -0.569 4.569 6 H 0.099 0.901 7 C -0.183 4.183 8 N -0.568 5.568 9 Si 0.769 3.231 10 H -0.174 1.174 11 H -0.212 1.212 12 H -0.214 1.214 13 S 2.809 3.191 14 O -0.988 6.988 15 O -1.001 7.001 16 N -0.870 5.870 17 C 0.039 3.961 18 C -0.160 4.160 19 C -0.095 4.095 20 C -0.193 4.193 21 C -0.060 4.060 22 N -0.219 5.219 23 C -0.006 4.006 24 C -0.169 4.169 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.035 0.965 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.254 0.746 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.163 0.837 37 H 0.185 0.815 38 H 0.203 0.797 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.605 -5.165 11.468 14.698 hybrid contribution 0.384 0.682 -0.833 1.143 sum 7.989 -4.483 10.635 14.037 Atomic orbital electron populations 1.22196 0.96201 1.03085 1.01241 1.21252 0.94390 0.81219 1.03492 1.57602 1.79311 1.24197 1.22349 1.18777 0.96528 0.91186 0.80151 1.21833 1.07178 1.20781 1.07126 0.90096 1.25691 0.99820 0.94878 0.97902 1.70067 1.39884 1.26663 1.20147 0.85716 0.80038 0.78561 0.78746 1.17443 1.21165 1.21367 1.01121 0.73007 0.72760 0.72252 1.93535 1.70147 1.76446 1.58676 1.93527 1.86716 1.33769 1.86064 1.55654 1.23715 1.68417 1.39221 1.20162 0.83528 0.99879 0.92577 1.20720 0.97582 0.95403 1.02265 1.21895 0.95675 0.98606 0.93362 1.22448 0.95473 1.00369 1.01043 1.23343 1.00097 0.88105 0.94443 1.67599 1.11085 1.33496 1.09711 1.21358 0.90290 0.94966 0.94018 1.20873 1.01383 0.94086 1.00602 0.93313 0.89189 0.93758 0.89689 0.89573 0.96540 0.96007 0.92757 0.74560 0.91269 0.88983 0.83711 0.81468 0.79728 0.88942 0.90465 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.97 10.24 71.98 0.74 -4.23 16 2 C 0.12 3.85 6.01 86.38 0.52 4.37 16 3 N -0.99 -38.39 2.84 -519.86 -1.48 -39.87 16 4 C 0.26 12.26 5.48 85.63 0.47 12.72 16 5 C -0.53 -25.41 7.97 25.60 0.20 -25.21 16 6 H 0.08 3.56 6.73 -2.91 -0.02 3.54 16 7 C 0.02 0.86 5.46 84.65 0.46 1.32 16 8 N -0.93 -51.93 13.29 21.45 0.28 -51.64 16 9 Si 0.94 40.13 29.54 68.60 2.03 42.16 16 10 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 13 S 2.80 105.63 6.11 -56.49 -0.34 105.28 16 14 O -1.00 -38.50 17.08 -128.00 -2.19 -40.69 16 15 O -1.02 -46.54 16.09 -128.00 -2.06 -48.60 16 16 N -1.11 -33.95 6.04 -190.78 -1.15 -35.11 16 17 C 0.16 5.34 5.70 85.63 0.49 5.83 16 18 C -0.16 -4.39 5.30 -19.77 -0.10 -4.50 16 19 C -0.07 -1.66 9.82 22.47 0.22 -1.44 16 20 C -0.17 -3.29 10.11 22.36 0.23 -3.07 16 21 C 0.10 1.98 11.18 84.69 0.95 2.93 16 22 N -0.51 -13.38 10.27 -183.88 -1.89 -15.27 16 23 C 0.13 3.60 6.78 42.54 0.29 3.89 16 24 C -0.11 -2.81 9.76 71.23 0.70 -2.11 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.04 1.39 8.09 -2.39 -0.02 1.37 16 28 H 0.08 2.65 8.05 -2.39 -0.02 2.63 16 29 H 0.09 2.31 7.65 -2.39 -0.02 2.30 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.02 1.19 6.83 -2.39 -0.02 1.17 16 32 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 33 H 0.42 10.66 8.65 -96.74 -0.84 9.82 16 34 H 0.07 2.49 7.61 -2.39 -0.02 2.47 16 35 H 0.09 3.24 3.87 -2.39 -0.01 3.23 16 36 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 38 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.08 2.11 6.12 -2.39 -0.01 2.10 16 41 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -66.52 353.18 -1.44 -67.96 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.21 Total: 25.27 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 5.15 Total: -9.49 kcal Atomic # 7 Polarization: -137.65 SS G_CDS: -4.24 Total: -141.89 kcal Atomic # 8 Polarization: -85.04 SS G_CDS: -4.25 Total: -89.29 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Atomic # 16 Polarization: 105.63 SS G_CDS: -0.34 Total: 105.28 kcal Total: -66.52 -1.44 -67.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599444997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.903 kcal (2) G-P(sol) polarization free energy of solvation -66.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds