Wall clock time and date at job start Fri Apr 10 2020 18:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40303 * 126.00504 * 2 1 4 4 C 1.30131 * 108.12437 * 180.02562 * 3 2 1 5 5 C 1.40484 * 108.22869 * 359.82390 * 4 3 2 6 6 C 1.34581 * 108.03538 * 0.30093 * 5 4 3 7 7 S 1.76199 * 126.19036 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.40227 * 156.17472 * 7 6 5 9 9 O 1.42107 * 106.40094 * 23.25889 * 7 6 5 10 10 N 1.65593 * 107.21807 * 269.71726 * 7 6 5 11 11 C 1.46506 * 120.00245 * 65.00204 * 10 7 6 12 12 C 1.52997 * 109.47289 * 165.00019 * 11 10 7 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99967 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00542 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00563 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99513 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47173 * 90.00033 * 17 15 13 19 19 H 1.48502 * 109.46811 * 209.99659 * 17 15 13 20 20 H 1.48495 * 109.47087 * 329.99741 * 17 15 13 21 21 C 1.50889 * 123.63681 * 179.36913 * 5 4 3 22 22 C 1.53390 * 108.25197 * 344.00240 * 21 5 4 23 23 C 1.53030 * 109.72055 * 50.31512 * 22 21 5 24 24 C 1.50954 * 128.28596 * 180.18359 * 4 3 2 25 25 H 1.08995 * 109.47131 * 269.97612 * 1 2 3 26 26 H 1.08997 * 109.47025 * 29.97560 * 1 2 3 27 27 H 1.08999 * 109.47006 * 149.97379 * 1 2 3 28 28 H 0.97000 * 120.00411 * 244.99876 * 10 7 6 29 29 H 1.09001 * 109.47060 * 285.00288 * 11 10 7 30 30 H 1.09004 * 109.47073 * 44.99777 * 11 10 7 31 31 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 32 32 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 33 33 H 0.96999 * 120.00061 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.86958 * 224.20796 * 21 5 4 35 35 H 1.08994 * 109.53927 * 103.60827 * 21 5 4 36 36 H 1.09006 * 109.43321 * 290.23675 * 22 21 5 37 37 H 1.09001 * 109.42723 * 170.39123 * 22 21 5 38 38 H 1.08997 * 109.42500 * 168.17740 * 23 22 21 39 39 H 1.09007 * 109.42137 * 48.34349 * 23 22 21 40 40 H 1.08999 * 109.71175 * 282.97624 * 24 4 3 41 41 H 1.08995 * 109.71565 * 43.58035 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2898 1.1350 0.0000 4 6 3.5282 0.7355 -0.0006 5 6 3.5368 -0.6694 0.0032 6 6 2.2597 -1.0938 -0.0007 7 16 1.7208 -2.7714 0.0009 8 8 0.4088 -2.7709 0.5465 9 8 2.7885 -3.5352 0.5450 10 7 1.5695 -3.2392 -1.5804 11 6 2.7539 -3.3103 -2.4398 12 6 2.4203 -4.1064 -3.7031 13 6 3.6387 -4.1801 -4.5868 14 1 4.5589 -3.7061 -4.2785 15 6 3.5788 -4.8525 -5.7890 16 7 4.6420 -4.9164 -6.5605 17 14 1.9874 -5.6730 -6.3219 18 1 1.1716 -4.7097 -7.1040 19 1 2.2984 -6.8562 -7.1637 20 1 1.2274 -6.1054 -5.1217 21 6 4.7980 -1.4976 -0.0101 22 6 5.9631 -0.5918 -0.4284 23 6 5.9570 0.6822 0.4194 24 6 4.7822 1.5759 0.0030 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 0.6968 -3.4662 -1.9377 29 1 3.0630 -2.3023 -2.7166 30 1 3.5636 -3.8039 -1.9025 31 1 2.1112 -5.1143 -3.4262 32 1 1.6105 -3.6127 -4.2403 33 1 4.5997 -5.3892 -7.4064 34 1 4.6956 -2.3171 -0.7214 35 1 4.9823 -1.8969 0.9871 36 1 5.8574 -0.3277 -1.4807 37 1 6.9046 -1.1209 -0.2810 38 1 6.8928 1.2209 0.2709 39 1 5.8553 0.4168 1.4717 40 1 4.9599 1.9753 -0.9955 41 1 4.6733 2.3957 0.7130 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601391384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:35 Heat of formation + Delta-G solvation = -13.541347 kcal Electronic energy + Delta-G solvation = -24916.108193 eV Core-core repulsion = 21345.127841 eV Total energy + Delta-G solvation = -3570.980352 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62590 -37.52995 -36.65528 -35.92281 -35.69465 -32.93803 -32.75496 -31.96120 -29.79850 -28.81199 -27.20705 -24.67197 -23.36761 -22.34446 -21.85615 -20.94434 -19.26896 -19.05122 -17.79632 -17.14299 -16.87035 -16.05943 -15.78735 -15.41913 -14.90869 -14.43379 -14.35278 -14.23629 -14.09106 -13.93128 -13.60387 -13.05682 -12.82290 -12.68718 -12.64880 -12.31141 -12.14246 -12.02037 -11.85952 -11.77317 -11.67251 -11.38719 -11.14392 -10.93036 -10.77634 -10.56792 -10.36970 -10.13004 -9.95499 -9.64800 -9.39039 -9.18473 -8.64650 -8.49544 -6.14968 -4.15354 0.29632 1.20123 2.23113 2.43914 3.07398 3.23265 3.32052 3.33397 3.64678 4.09708 4.35155 4.36284 4.71098 4.81236 4.84376 4.91565 5.04949 5.14744 5.18648 5.32194 5.34630 5.42660 5.47585 5.49081 5.57579 5.78407 5.82184 5.95599 5.99102 6.04371 6.13276 6.18099 6.32010 6.42811 6.51844 6.65682 7.03874 7.09846 7.18657 7.40308 7.63138 8.38039 8.87752 9.45499 10.97778 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.013785 B = 0.004764 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.681135 B = 5876.440335 C = 6910.012023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.321 5.321 3 N -0.253 5.253 4 C 0.061 3.939 5 C -0.106 4.106 6 C -0.489 4.489 7 S 2.709 3.291 8 O -0.965 6.965 9 O -0.935 6.935 10 N -1.109 6.109 11 C 0.125 3.875 12 C -0.017 4.017 13 C -0.525 4.525 14 H 0.077 0.923 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.879 3.121 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.066 4.066 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.037 4.037 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.417 0.583 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.027 0.973 32 H 0.019 0.981 33 H 0.265 0.735 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.546 10.761 14.025 18.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.106 5.106 3 N -0.077 5.077 4 C -0.106 4.106 5 C -0.120 4.120 6 C -0.695 4.695 7 S 2.792 3.208 8 O -0.955 6.955 9 O -0.923 6.923 10 N -0.872 5.872 11 C 0.001 3.999 12 C -0.056 4.056 13 C -0.564 4.564 14 H 0.095 0.905 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.706 3.294 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.189 1.189 21 C -0.104 4.104 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.076 4.076 25 H 0.104 0.896 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.252 0.748 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.404 11.257 14.671 19.009 hybrid contribution -0.666 -0.463 -0.976 1.269 sum -5.071 10.794 13.695 18.160 Atomic orbital electron populations 1.22190 0.72922 1.05177 1.04641 1.48059 1.06073 1.01272 1.55221 1.76871 1.01659 1.08738 1.20480 1.22541 0.93446 0.93689 1.00957 1.20172 0.93262 0.94261 1.04353 1.33216 0.99860 1.16759 1.19689 1.01701 0.73507 0.72535 0.73085 1.93563 1.37944 1.86862 1.77096 1.93631 1.56827 1.65414 1.76476 1.55549 1.17893 1.82803 1.30969 1.21567 0.84563 1.01070 0.92747 1.19762 0.98329 0.95539 0.91966 1.20921 0.97136 1.35356 1.02957 0.90503 1.24973 0.96268 0.95617 0.96251 1.69892 1.28833 1.42721 1.12082 0.86802 0.84152 0.79456 0.79010 1.20269 1.21209 1.18927 1.20469 0.89559 0.96787 1.03593 1.21607 0.98201 0.95532 1.00456 1.21607 0.97307 0.96232 1.00442 1.20170 0.88089 0.96279 1.03046 0.89618 0.88700 0.88498 0.74775 0.92191 0.90355 0.95473 0.96299 0.92517 0.89270 0.89343 0.91055 0.90630 0.90713 0.91464 0.89494 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 10.55 59.85 0.63 1.63 16 2 N -0.32 -4.66 4.02 -67.39 -0.27 -4.93 16 3 N -0.25 -3.85 12.56 33.75 0.42 -3.42 16 4 C 0.06 0.86 7.10 -82.34 -0.58 0.27 16 5 C -0.11 -1.57 5.86 -104.98 -0.62 -2.19 16 6 C -0.49 -7.40 6.96 -17.36 -0.12 -7.52 16 7 S 2.71 40.73 5.66 -107.50 -0.61 40.13 16 8 O -0.96 -14.85 15.79 -57.17 -0.90 -15.75 16 9 O -0.93 -15.98 15.96 -57.17 -0.91 -16.89 16 10 N -1.11 -16.70 6.00 -10.61 -0.06 -16.76 16 11 C 0.12 2.26 5.79 -4.04 -0.02 2.24 16 12 C -0.02 -0.37 4.18 -27.89 -0.12 -0.48 16 13 C -0.53 -14.02 9.66 -34.44 -0.33 -14.35 16 14 H 0.08 2.18 7.99 -52.48 -0.42 1.76 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -26.52 13.96 55.43 0.77 -25.75 16 17 Si 0.88 20.65 27.47 -169.99 -4.67 15.98 16 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 21 C -0.07 -0.89 5.02 -27.59 -0.14 -1.03 16 22 C -0.12 -1.32 5.87 -26.51 -0.16 -1.47 16 23 C -0.12 -1.08 5.86 -26.52 -0.16 -1.24 16 24 C -0.04 -0.38 6.31 -27.57 -0.17 -0.56 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.10 0.98 6.70 -51.93 -0.35 0.64 16 28 H 0.42 5.42 8.65 -34.47 -0.30 5.12 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.43 7.14 -51.93 -0.37 1.05 16 31 H 0.03 0.59 7.20 -51.93 -0.37 0.22 16 32 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.09 1.28 6.85 -51.93 -0.36 0.92 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 342.55 15.07 5.16 5.16 Total: -1.00 -33.41 342.55 -8.90 -42.31 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.95 Total: 2.75 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -1.88 Total: -22.81 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.86 Total: -50.86 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.82 Total: -32.65 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Atomic # 16 Polarization: 40.73 SS G_CDS: -0.61 Total: 40.13 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.41 -8.90 -42.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601391384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.771 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds