Wall clock time and date at job start Fri Apr 10 2020 18:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40303 * 126.00504 * 2 1 4 4 C 1.30131 * 108.12437 * 180.02562 * 3 2 1 5 5 C 1.40484 * 108.22869 * 359.82390 * 4 3 2 6 6 C 1.34581 * 108.03538 * 0.30093 * 5 4 3 7 7 S 1.76199 * 126.19036 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.40227 * 156.17472 * 7 6 5 9 9 O 1.42107 * 106.40094 * 23.25889 * 7 6 5 10 10 N 1.65593 * 107.21807 * 269.71726 * 7 6 5 11 11 C 1.46506 * 120.00245 * 65.00204 * 10 7 6 12 12 C 1.52997 * 109.47289 * 165.00019 * 11 10 7 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99967 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00542 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00563 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99513 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47173 * 90.00033 * 17 15 13 19 19 H 1.48502 * 109.46811 * 209.99659 * 17 15 13 20 20 H 1.48495 * 109.47087 * 329.99741 * 17 15 13 21 21 C 1.50889 * 123.63681 * 179.36913 * 5 4 3 22 22 C 1.53390 * 108.25197 * 344.00240 * 21 5 4 23 23 C 1.53030 * 109.72055 * 50.31512 * 22 21 5 24 24 C 1.50954 * 128.28596 * 180.18359 * 4 3 2 25 25 H 1.08995 * 109.47131 * 269.97612 * 1 2 3 26 26 H 1.08997 * 109.47025 * 29.97560 * 1 2 3 27 27 H 1.08999 * 109.47006 * 149.97379 * 1 2 3 28 28 H 0.97000 * 120.00411 * 244.99876 * 10 7 6 29 29 H 1.09001 * 109.47060 * 285.00288 * 11 10 7 30 30 H 1.09004 * 109.47073 * 44.99777 * 11 10 7 31 31 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 32 32 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 33 33 H 0.96999 * 120.00061 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.86958 * 224.20796 * 21 5 4 35 35 H 1.08994 * 109.53927 * 103.60827 * 21 5 4 36 36 H 1.09006 * 109.43321 * 290.23675 * 22 21 5 37 37 H 1.09001 * 109.42723 * 170.39123 * 22 21 5 38 38 H 1.08997 * 109.42500 * 168.17740 * 23 22 21 39 39 H 1.09007 * 109.42137 * 48.34349 * 23 22 21 40 40 H 1.08999 * 109.71175 * 282.97624 * 24 4 3 41 41 H 1.08995 * 109.71565 * 43.58035 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2898 1.1350 0.0000 4 6 3.5282 0.7355 -0.0006 5 6 3.5368 -0.6694 0.0032 6 6 2.2597 -1.0938 -0.0007 7 16 1.7208 -2.7714 0.0009 8 8 0.4088 -2.7709 0.5465 9 8 2.7885 -3.5352 0.5450 10 7 1.5695 -3.2392 -1.5804 11 6 2.7539 -3.3103 -2.4398 12 6 2.4203 -4.1064 -3.7031 13 6 3.6387 -4.1801 -4.5868 14 1 4.5589 -3.7061 -4.2785 15 6 3.5788 -4.8525 -5.7890 16 7 4.6420 -4.9164 -6.5605 17 14 1.9874 -5.6730 -6.3219 18 1 1.1716 -4.7097 -7.1040 19 1 2.2984 -6.8562 -7.1637 20 1 1.2274 -6.1054 -5.1217 21 6 4.7980 -1.4976 -0.0101 22 6 5.9631 -0.5918 -0.4284 23 6 5.9570 0.6822 0.4194 24 6 4.7822 1.5759 0.0030 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 0.6968 -3.4662 -1.9377 29 1 3.0630 -2.3023 -2.7166 30 1 3.5636 -3.8039 -1.9025 31 1 2.1112 -5.1143 -3.4262 32 1 1.6105 -3.6127 -4.2403 33 1 4.5997 -5.3892 -7.4064 34 1 4.6956 -2.3171 -0.7214 35 1 4.9823 -1.8969 0.9871 36 1 5.8574 -0.3277 -1.4807 37 1 6.9046 -1.1209 -0.2810 38 1 6.8928 1.2209 0.2709 39 1 5.8553 0.4168 1.4717 40 1 4.9599 1.9753 -0.9955 41 1 4.6733 2.3957 0.7130 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601391384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:34 Heat of formation + Delta-G solvation = -38.014137 kcal Electronic energy + Delta-G solvation = -24917.169413 eV Core-core repulsion = 21345.127841 eV Total energy + Delta-G solvation = -3572.041572 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.68008 -38.74153 -37.61221 -37.23153 -37.16029 -34.73309 -33.92834 -32.91113 -31.57576 -29.80086 -28.10775 -26.46523 -24.29196 -23.44639 -22.93488 -22.56318 -20.52530 -20.00186 -19.18436 -18.67501 -18.29419 -17.28999 -16.85161 -16.58147 -16.24693 -15.86112 -15.69284 -15.62564 -15.30331 -14.80966 -14.66109 -14.52104 -13.94035 -13.77639 -13.69360 -13.54400 -13.47064 -13.41542 -13.24497 -13.13206 -12.91675 -12.65622 -12.30720 -12.16838 -11.85900 -11.81788 -11.78292 -11.63487 -11.44417 -11.29227 -10.77837 -10.71894 -10.53719 -9.54919 -8.26588 -6.31802 -0.92895 0.07284 1.24792 1.36952 1.39430 1.42160 1.52426 1.84523 2.38395 2.44019 3.06704 3.09274 3.25447 3.81629 3.88851 4.00702 4.03168 4.07507 4.17484 4.26180 4.41276 4.42150 4.51888 4.54753 4.59223 4.61420 4.66823 4.79004 4.93623 5.03101 5.15922 5.20778 5.22696 5.33996 5.43334 5.47024 5.52388 5.61893 5.63567 5.97031 6.27529 6.33160 6.76014 7.32593 8.89383 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.013785 B = 0.004764 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.681135 B = 5876.440335 C = 6910.012023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.325 5.325 3 N -0.272 5.272 4 C 0.054 3.946 5 C -0.121 4.121 6 C -0.503 4.503 7 S 2.730 3.270 8 O -0.965 6.965 9 O -0.956 6.956 10 N -1.103 6.103 11 C 0.137 3.863 12 C -0.017 4.017 13 C -0.532 4.532 14 H 0.042 0.958 15 C 0.009 3.991 16 N -0.947 5.947 17 Si 0.945 3.055 18 H -0.267 1.267 19 H -0.288 1.288 20 H -0.242 1.242 21 C -0.072 4.072 22 C -0.121 4.121 23 C -0.112 4.112 24 C -0.038 4.038 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.428 0.572 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.266 0.734 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.961 11.381 14.781 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.110 5.110 3 N -0.096 5.096 4 C -0.113 4.113 5 C -0.136 4.136 6 C -0.710 4.710 7 S 2.814 3.186 8 O -0.955 6.955 9 O -0.945 6.945 10 N -0.866 5.866 11 C 0.012 3.988 12 C -0.056 4.056 13 C -0.571 4.571 14 H 0.060 0.940 15 C -0.189 4.189 16 N -0.588 5.588 17 Si 0.769 3.231 18 H -0.192 1.192 19 H -0.214 1.214 20 H -0.165 1.165 21 C -0.110 4.110 22 C -0.158 4.158 23 C -0.149 4.149 24 C -0.077 4.077 25 H 0.116 0.884 26 H 0.133 0.867 27 H 0.121 0.879 28 H 0.266 0.734 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.857 11.876 15.447 20.346 hybrid contribution -0.190 -0.601 -1.161 1.321 sum -6.047 11.275 14.286 19.177 Atomic orbital electron populations 1.22544 0.71321 1.06547 1.05896 1.48390 1.07092 1.00828 1.54729 1.76832 1.02245 1.09315 1.21241 1.23140 0.94254 0.93875 1.00026 1.20473 0.93584 0.95030 1.04502 1.33153 1.00458 1.16771 1.20592 1.00968 0.72910 0.72215 0.72540 1.93558 1.37948 1.87009 1.76956 1.93603 1.57625 1.66402 1.76898 1.55319 1.17586 1.83105 1.30623 1.21217 0.85419 1.00479 0.91734 1.19698 0.96510 0.96653 0.92734 1.21279 0.97801 1.34281 1.03719 0.93963 1.25925 0.99970 0.96533 0.96426 1.70049 1.31495 1.44379 1.12830 0.85737 0.79779 0.78302 0.79323 1.19209 1.21418 1.16478 1.20544 0.90293 0.96805 1.03342 1.21636 0.97708 0.96257 1.00216 1.21604 0.98048 0.95247 1.00041 1.20373 0.86809 0.96471 1.04046 0.88418 0.86721 0.87856 0.73427 0.92131 0.90870 0.94837 0.94786 0.92486 0.90930 0.89054 0.92018 0.89296 0.88035 0.91192 0.88726 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.54 10.55 127.77 1.35 2.88 16 2 N -0.33 -9.06 4.02 -367.12 -1.48 -10.53 16 3 N -0.27 -7.95 12.56 -47.13 -0.59 -8.54 16 4 C 0.05 1.46 7.10 43.44 0.31 1.77 16 5 C -0.12 -3.53 5.86 -20.10 -0.12 -3.65 16 6 C -0.50 -14.84 6.96 83.34 0.58 -14.26 16 7 S 2.73 79.47 5.66 -56.49 -0.32 79.15 16 8 O -0.96 -28.14 15.79 -128.00 -2.02 -30.16 16 9 O -0.96 -32.35 15.96 -128.00 -2.04 -34.39 16 10 N -1.10 -31.65 6.00 -187.48 -1.12 -32.78 16 11 C 0.14 4.89 5.79 86.38 0.50 5.39 16 12 C -0.02 -0.72 4.18 29.85 0.12 -0.59 16 13 C -0.53 -28.73 9.66 25.60 0.25 -28.48 16 14 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 15 C 0.01 0.50 5.47 84.65 0.46 0.96 16 16 N -0.95 -57.27 13.96 21.45 0.30 -56.97 16 17 Si 0.95 41.77 27.47 68.60 1.88 43.66 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 19 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 21 C -0.07 -1.92 5.02 30.04 0.15 -1.77 16 22 C -0.12 -2.54 5.87 30.74 0.18 -2.36 16 23 C -0.11 -1.83 5.86 30.73 0.18 -1.65 16 24 C -0.04 -0.72 6.31 30.05 0.19 -0.53 16 25 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.10 1.91 6.70 -2.39 -0.02 1.89 16 28 H 0.43 10.19 8.65 -96.75 -0.84 9.35 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.07 2.69 7.14 -2.38 -0.02 2.67 16 31 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 32 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 33 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.07 2.15 6.85 -2.39 -0.02 2.13 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.06 1.40 8.10 -2.38 -0.02 1.39 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.12 8.10 -2.38 -0.02 1.11 16 40 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -71.69 342.55 -1.09 -72.77 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.15 Total: 20.09 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 4.15 Total: -42.30 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -2.89 Total: -108.83 kcal Atomic # 8 Polarization: -60.48 SS G_CDS: -4.06 Total: -64.55 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.88 Total: 43.66 kcal Atomic # 16 Polarization: 79.47 SS G_CDS: -0.32 Total: 79.15 kcal Total: -71.69 -1.09 -72.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601391384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.759 kcal (2) G-P(sol) polarization free energy of solvation -71.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds