Wall clock time and date at job start Fri Apr 10 2020 18:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39893 * 109.47450 * 2 1 4 4 F 1.39907 * 109.47013 * 239.99872 * 2 1 3 5 5 C 1.53002 * 109.47303 * 120.00668 * 2 1 3 6 6 C 1.52996 * 109.47303 * 180.02562 * 5 2 1 7 7 S 1.81397 * 109.47374 * 179.97438 * 6 5 2 8 8 O 1.42095 * 110.54267 * 68.37210 * 7 6 5 9 9 O 1.42104 * 110.53884 * 291.62190 * 7 6 5 10 10 N 1.65601 * 104.45095 * 179.97438 * 7 6 5 11 11 C 1.47021 * 125.64951 * 270.03954 * 10 7 6 12 12 C 1.54326 * 107.27092 * 181.02426 * 11 10 7 13 13 C 1.55160 * 102.94105 * 22.19229 * 12 11 10 14 14 O 1.42894 * 111.03337 * 82.58948 * 13 12 11 15 15 C 1.50700 * 111.00192 * 206.42275 * 13 12 11 16 16 H 1.07999 * 119.99988 * 112.19762 * 15 13 12 17 17 C 1.37885 * 120.00047 * 292.19942 * 15 13 12 18 18 N 1.31518 * 119.99792 * 359.72305 * 17 15 13 19 19 Si 1.86795 * 120.00009 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47163 * 59.99902 * 19 17 15 21 21 H 1.48495 * 109.47159 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47290 * 299.99897 * 19 17 15 23 23 C 1.47430 * 125.64751 * 90.00143 * 10 7 6 24 24 H 1.09005 * 109.47093 * 299.99438 * 1 2 3 25 25 H 1.08999 * 109.47348 * 59.99562 * 1 2 3 26 26 H 1.09001 * 109.47102 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47670 * 59.99542 * 5 2 1 28 28 H 1.09008 * 109.46659 * 299.99542 * 5 2 1 29 29 H 1.09001 * 109.47102 * 59.99150 * 6 5 2 30 30 H 1.09005 * 109.47093 * 299.99893 * 6 5 2 31 31 H 1.09003 * 109.88159 * 300.44198 * 11 10 7 32 32 H 1.08999 * 109.87773 * 61.44954 * 11 10 7 33 33 H 1.08996 * 110.71706 * 263.83048 * 12 11 10 34 34 H 1.08999 * 110.71694 * 140.56035 * 12 11 10 35 35 H 0.96707 * 114.00533 * 64.60112 * 14 13 12 36 36 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 37 37 H 1.08998 * 110.36673 * 37.06767 * 23 10 7 38 38 H 1.09002 * 110.36456 * 274.74649 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0400 -0.7214 1.2492 6 6 3.5700 -0.7208 1.2495 7 16 4.1747 -1.5754 2.7308 8 8 3.8791 -2.9636 2.6613 9 8 3.8781 -0.8208 3.8978 10 7 5.8243 -1.5030 2.6052 11 6 6.6779 -2.4999 1.9426 12 6 8.1389 -2.0278 2.0976 13 6 8.0705 -1.0842 3.3274 14 8 8.1252 -1.8266 4.5471 15 6 9.1669 -0.0514 3.2774 16 1 8.9218 0.9894 3.1255 17 6 10.4829 -0.4353 3.4254 18 7 10.7809 -1.7021 3.6157 19 14 11.8418 0.8449 3.3642 20 1 11.6341 1.8394 4.4473 21 1 13.1568 0.1802 3.5486 22 1 11.8147 1.5330 2.0484 23 6 6.6803 -0.4277 3.1388 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6767 -1.7490 1.2492 28 1 1.6767 -0.2075 2.1392 29 1 3.9329 0.3070 1.2497 30 1 3.9337 -1.2343 0.3594 31 1 6.5500 -3.4723 2.4183 32 1 6.4176 -2.5671 0.8862 33 1 8.4643 -1.4832 1.2113 34 1 8.7982 -2.8728 2.2959 35 1 8.9597 -2.2955 4.6852 36 1 11.7068 -1.9721 3.7195 37 1 6.2944 -0.0750 4.0952 38 1 6.7429 0.3956 2.4272 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601453079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:38 Heat of formation + Delta-G solvation = -227.341730 kcal Electronic energy + Delta-G solvation = -25174.297031 eV Core-core repulsion = 21007.523317 eV Total energy + Delta-G solvation = -4166.773713 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.23589 -47.21077 -38.04189 -36.90106 -35.75245 -34.83706 -34.26844 -32.12189 -30.94218 -29.28909 -28.27863 -25.14268 -24.74977 -21.99732 -21.42621 -19.82068 -18.61803 -17.95048 -17.73477 -17.22185 -16.74259 -16.50830 -15.91698 -15.76685 -14.96806 -14.81654 -14.40414 -14.11162 -13.87375 -13.71020 -13.54240 -13.35624 -12.95934 -12.89782 -12.72055 -12.48454 -12.44760 -11.98688 -11.92034 -11.85456 -11.77974 -11.71725 -11.61689 -11.30937 -11.02978 -10.79781 -10.57984 -10.53329 -10.43613 -10.02057 -9.41438 -8.67921 -8.36935 -8.17161 -6.28604 -4.36443 0.36038 2.88602 3.21315 3.26828 3.29618 3.42384 3.70455 3.81418 3.99533 4.15417 4.22343 4.27688 4.56198 4.64579 4.91295 4.97749 5.06180 5.12409 5.37931 5.40455 5.40856 5.52776 5.79138 5.93718 5.97995 6.23432 6.40737 6.59681 6.77520 6.91550 7.02584 7.32983 7.35418 7.74697 8.02246 8.64911 9.32512 9.52023 10.79242 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.022934 B = 0.003660 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.614702 B = 7649.159591 C = 8174.123091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.296 3.704 3 F -0.197 7.197 4 F -0.198 7.198 5 C -0.153 4.153 6 C -0.650 4.650 7 S 2.631 3.369 8 O -0.956 6.956 9 O -0.950 6.950 10 N -1.003 6.003 11 C 0.122 3.878 12 C -0.136 4.136 13 C 0.254 3.746 14 O -0.583 6.583 15 C -0.537 4.537 16 H 0.065 0.935 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.127 3.873 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.385 0.615 36 H 0.270 0.730 37 H 0.077 0.923 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.212 1.290 -7.810 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.259 3.741 3 F -0.178 7.178 4 F -0.179 7.179 5 C -0.193 4.193 6 C -0.776 4.776 7 S 2.723 3.277 8 O -0.946 6.946 9 O -0.941 6.941 10 N -0.842 5.842 11 C -0.003 4.003 12 C -0.176 4.176 13 C 0.212 3.788 14 O -0.393 6.393 15 C -0.576 4.576 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.732 3.268 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.201 1.201 23 C 0.003 3.997 24 H 0.111 0.889 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.237 0.763 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.226 1.015 -7.052 18.641 hybrid contribution 1.640 0.865 -1.055 2.134 sum -15.586 1.880 -8.108 17.669 Atomic orbital electron populations 1.22809 0.91150 1.05782 1.05718 1.20921 0.93687 0.75792 0.83745 1.93025 1.90583 1.37391 1.96824 1.93022 1.90603 1.80925 1.53368 1.22373 0.93726 1.04242 0.98930 1.30845 1.03875 1.17166 1.25727 1.04361 0.72621 0.74747 0.75934 1.93565 1.83716 1.30007 1.87314 1.93586 1.83508 1.73938 1.43019 1.58380 1.21953 1.33484 1.70410 1.21814 0.92777 0.91196 0.94508 1.23212 0.91693 1.01443 1.01272 1.19536 0.89274 0.88268 0.81687 1.86107 1.43084 1.68610 1.41473 1.21478 0.90960 0.94311 1.50838 0.91691 1.24994 0.98823 0.95639 0.93551 1.69563 1.19817 1.15183 1.49072 0.86459 0.80364 0.81254 0.78757 1.20000 1.21151 1.20107 1.22236 0.91390 0.88228 0.97866 0.88898 0.89719 0.88933 0.87269 0.87205 0.84218 0.84386 0.91903 0.93387 0.91454 0.90011 0.76340 0.92029 0.90431 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.20 9.38 37.16 0.35 -0.85 16 2 C 0.30 2.84 2.11 -26.73 -0.06 2.79 16 3 F -0.20 -2.27 16.54 2.25 0.04 -2.24 16 4 F -0.20 -2.25 16.54 2.25 0.04 -2.21 16 5 C -0.15 -1.48 4.81 -26.73 -0.13 -1.60 16 6 C -0.65 -7.60 5.93 37.16 0.22 -7.38 16 7 S 2.63 42.03 5.65 -107.50 -0.61 41.42 16 8 O -0.96 -17.26 17.60 -57.54 -1.01 -18.27 16 9 O -0.95 -17.79 17.28 -57.54 -0.99 -18.78 16 10 N -1.00 -18.53 3.62 -111.42 -0.40 -18.93 16 11 C 0.12 2.26 6.89 -3.06 -0.02 2.23 16 12 C -0.14 -2.91 5.65 -24.89 -0.14 -3.05 16 13 C 0.25 6.07 0.88 -89.63 -0.08 5.99 16 14 O -0.58 -15.08 13.16 -35.23 -0.46 -15.54 16 15 C -0.54 -13.71 8.25 -34.44 -0.28 -13.99 16 16 H 0.06 1.62 7.77 -52.49 -0.41 1.21 16 17 C 0.07 1.84 5.31 -17.82 -0.09 1.75 16 18 N -0.90 -23.03 10.81 55.43 0.60 -22.43 16 19 Si 0.90 19.94 29.54 -169.99 -5.02 14.91 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 C 0.13 2.64 6.25 -2.53 -0.02 2.62 16 24 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.11 0.88 8.14 -51.92 -0.42 0.45 16 29 H 0.14 1.55 7.80 -51.92 -0.41 1.15 16 30 H 0.14 1.48 7.80 -51.92 -0.41 1.08 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 34 H 0.08 1.84 7.85 -51.93 -0.41 1.43 16 35 H 0.38 10.01 7.00 45.56 0.32 10.33 16 36 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 37 H 0.08 1.67 7.67 -51.93 -0.40 1.28 16 38 H 0.07 1.27 8.01 -51.93 -0.42 0.85 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -31.39 334.77 -7.67 -39.05 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -4.63 Total: 9.47 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -0.25 Total: -11.49 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.20 Total: -41.36 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -2.47 Total: -52.60 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.07 Total: -4.45 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 42.03 SS G_CDS: -0.61 Total: 41.42 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.39 -7.67 -39.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601453079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.287 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds