Wall clock time and date at job start Fri Apr 10 2020 18:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35757 * 117.00190 * 2 1 4 4 C 1.38982 * 119.90471 * 0.02562 * 3 2 1 5 5 C 1.37712 * 120.09742 * 180.02562 * 4 3 2 6 6 C 1.39772 * 119.90286 * 359.97438 * 5 4 3 7 7 C 1.43202 * 120.09528 * 179.97438 * 6 5 4 8 8 N 6.69646 * 117.00074 * 359.97438 * 2 1 3 9 9 C 1.39735 * 119.81411 * 0.02562 * 6 5 4 10 10 C 1.37760 * 119.90279 * 359.97438 * 9 6 5 11 11 C 1.50694 * 119.95188 * 179.97438 * 10 9 6 12 12 N 1.46499 * 109.47768 * 265.00343 * 11 10 9 13 13 C 1.35305 * 125.87307 * 125.00038 * 12 11 10 14 14 C 1.35346 * 106.17794 * 180.02562 * 13 12 11 15 15 C 1.50704 * 126.75208 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47071 * 95.00092 * 15 14 13 17 17 C 1.36935 * 120.00144 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00010 * 0.02562 * 17 16 15 19 19 C 1.38823 * 120.00020 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99654 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00003 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47314 * 89.99571 * 21 19 17 23 23 H 1.48501 * 109.46981 * 209.99980 * 21 19 17 24 24 H 1.48502 * 109.46847 * 329.99604 * 21 19 17 25 25 N 1.33768 * 106.49699 * 0.02562 * 14 13 12 26 26 N 1.28637 * 108.88554 * 359.73285 * 25 14 13 27 27 H 1.08997 * 109.46777 * 299.99876 * 1 2 3 28 28 H 1.08998 * 109.47298 * 59.99691 * 1 2 3 29 29 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.94971 * 359.97438 * 4 3 2 31 31 H 1.07999 * 120.04859 * 179.97438 * 5 4 3 32 32 H 1.08004 * 120.05338 * 179.72278 * 9 6 5 33 33 H 1.08998 * 109.47310 * 25.00505 * 11 10 9 34 34 H 1.09004 * 109.46881 * 144.99895 * 11 10 9 35 35 H 1.08002 * 126.90805 * 0.02562 * 13 12 11 36 36 H 1.09000 * 109.47452 * 214.99563 * 15 14 13 37 37 H 1.09003 * 109.46981 * 335.00204 * 15 14 13 38 38 H 0.97004 * 119.99637 * 359.97438 * 16 15 14 39 39 H 0.96999 * 119.99551 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2865 2.3739 0.0005 5 6 1.9076 3.6030 0.0000 6 6 3.3033 3.6785 -0.0005 7 6 3.9535 4.9544 -0.0016 8 7 4.4692 5.9665 -0.0027 9 6 4.0625 2.5053 -0.0011 10 6 3.4330 1.2800 -0.0005 11 6 4.2506 0.0141 -0.0017 12 7 4.4130 -0.4613 -1.3779 13 6 5.5896 -0.7212 -1.9933 14 6 5.2779 -1.1331 -3.2443 15 6 6.2443 -1.5419 -4.3261 16 7 6.4096 -2.9974 -4.3086 17 6 7.2465 -3.6024 -5.2079 18 1 7.7850 -3.0064 -5.9298 19 6 7.4027 -4.9817 -5.1917 20 7 6.7467 -5.7079 -4.3115 21 14 8.5448 -5.8068 -6.4180 22 1 9.9104 -5.8944 -5.8412 23 1 8.0455 -7.1728 -6.7179 24 1 8.5865 -5.0091 -7.6699 25 7 3.9434 -1.1047 -3.3321 26 7 3.4605 -0.7074 -2.2080 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.2081 2.3147 0.0005 31 1 1.3172 4.5073 0.0000 32 1 5.1412 2.5591 -0.0060 33 1 5.2306 0.2141 0.4316 34 1 3.7413 -0.7479 0.5883 35 1 6.5786 -0.6204 -1.5711 36 1 5.8560 -1.2321 -5.2963 37 1 7.2085 -1.0646 -4.1512 38 1 5.9267 -3.5326 -3.6594 39 1 6.8555 -6.6717 -4.3004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603237873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:08 Heat of formation + Delta-G solvation = 112.818702 kcal Electronic energy + Delta-G solvation = -24282.925090 eV Core-core repulsion = 20614.272921 eV Total energy + Delta-G solvation = -3668.652169 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.08648 -41.39714 -38.96610 -37.40228 -36.83992 -35.79196 -33.65659 -32.64036 -31.65391 -31.44834 -28.53364 -27.99360 -27.43001 -24.73597 -24.35490 -23.61697 -22.66559 -21.74659 -19.65548 -19.20481 -19.04877 -18.06355 -17.69450 -17.04918 -16.66979 -16.51745 -15.79493 -15.61686 -15.53304 -15.22111 -15.10031 -15.00311 -14.77895 -14.40327 -14.31135 -14.03502 -13.67224 -13.42755 -13.30811 -13.13486 -12.97216 -12.77756 -12.74497 -12.38539 -12.06323 -11.98209 -11.93982 -11.84878 -11.65367 -10.93760 -10.89971 -10.19275 -10.06037 -9.30444 -8.98481 -7.90746 -5.20666 -0.22189 0.06717 0.78584 1.49965 1.53767 1.54793 1.60650 1.61441 1.64698 1.99010 2.28297 2.61887 2.80594 2.84355 3.38679 3.41904 3.52038 3.70005 3.86741 4.03005 4.08151 4.17918 4.26567 4.28564 4.37746 4.39774 4.46904 4.56445 4.67423 4.76578 4.81804 4.91306 5.00820 5.11837 5.19928 5.24390 5.30038 5.50585 5.53383 5.81073 6.29349 6.30297 6.45650 7.36023 7.68233 8.08321 8.34326 9.33317 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.002695 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.973595 B =10386.449709 C =11361.280730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.317 6.317 3 C 0.189 3.811 4 C -0.216 4.216 5 C -0.005 4.005 6 C -0.090 4.090 7 C 0.285 3.715 8 N -0.471 5.471 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.159 3.841 12 N -0.280 5.280 13 C -0.023 4.023 14 C -0.043 4.043 15 C 0.236 3.764 16 N -0.739 5.739 17 C -0.242 4.242 18 H 0.083 0.917 19 C -0.078 4.078 20 N -0.973 5.973 21 Si 0.978 3.022 22 H -0.283 1.283 23 H -0.298 1.298 24 H -0.269 1.269 25 N -0.308 5.308 26 N -0.092 5.092 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.166 0.834 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.115 0.885 35 H 0.228 0.772 36 H 0.024 0.976 37 H 0.061 0.939 38 H 0.371 0.629 39 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.140 18.809 17.130 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.228 6.228 3 C 0.140 3.860 4 C -0.234 4.234 5 C -0.025 4.025 6 C -0.094 4.094 7 C -0.029 4.029 8 N -0.148 5.148 9 C -0.021 4.021 10 C -0.170 4.170 11 C 0.041 3.959 12 N -0.074 5.074 13 C -0.175 4.175 14 C -0.182 4.182 15 C 0.109 3.891 16 N -0.381 5.381 17 C -0.374 4.374 18 H 0.101 0.899 19 C -0.270 4.270 20 N -0.624 5.624 21 Si 0.807 3.193 22 H -0.209 1.209 23 H -0.225 1.225 24 H -0.193 1.193 25 N -0.175 5.175 26 N -0.071 5.071 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.125 0.875 30 H 0.184 0.816 31 H 0.178 0.822 32 H 0.177 0.823 33 H 0.175 0.825 34 H 0.134 0.866 35 H 0.245 0.755 36 H 0.042 0.958 37 H 0.079 0.921 38 H 0.202 0.798 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.703 20.177 16.794 29.163 hybrid contribution 0.886 -1.217 -0.304 1.536 sum -11.817 18.960 16.490 27.768 Atomic orbital electron populations 1.23412 0.75969 1.05532 1.02831 1.86145 1.23829 1.26506 1.86303 1.19378 0.91917 0.85427 0.89308 1.21438 1.02019 0.90666 1.09276 1.21284 0.91842 0.98953 0.90443 1.15851 0.93261 0.85612 1.14694 1.25753 0.92581 0.92585 0.92027 1.81308 1.09397 1.12543 1.11539 1.21075 1.01158 0.88819 0.91048 1.18913 0.91054 0.94601 1.12481 1.21151 1.04514 0.94353 0.75897 1.47720 1.04206 1.41916 1.13551 1.23847 0.93948 1.06214 0.93441 1.22234 0.91971 1.06509 0.97439 1.18931 0.93448 0.84361 0.92395 1.42520 1.53531 1.01798 1.40282 1.19697 1.17317 0.90660 1.09710 0.89896 1.25635 1.02732 0.97031 1.01627 1.69858 1.47662 1.05037 1.39819 0.85065 0.78190 0.77246 0.78794 1.20942 1.22527 1.19333 1.75036 1.10003 1.17039 1.15428 1.78190 1.16320 1.17417 0.95180 0.89887 0.91678 0.87481 0.81642 0.82218 0.82254 0.82544 0.86650 0.75510 0.95767 0.92135 0.79798 0.94090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -5.28 9.61 -90.83 -0.87 -6.15 16 3 C 0.19 2.73 6.66 22.62 0.15 2.89 16 4 C -0.22 -2.10 9.01 22.32 0.20 -1.90 16 5 C 0.00 -0.04 9.75 22.52 0.22 0.18 16 6 C -0.09 -1.12 5.74 -21.30 -0.12 -1.24 16 7 C 0.28 4.84 15.33 88.33 1.35 6.20 16 8 N -0.47 -10.73 18.54 19.00 0.35 -10.38 16 9 C 0.00 0.00 9.38 22.52 0.21 0.21 16 10 C -0.17 -2.36 5.26 -19.81 -0.10 -2.46 16 11 C 0.16 2.30 6.30 85.63 0.54 2.84 16 12 N -0.28 -7.11 3.43 -351.48 -1.21 -8.32 16 13 C -0.02 -0.63 11.50 83.49 0.96 0.33 16 14 C -0.04 -1.64 6.61 41.60 0.28 -1.36 16 15 C 0.24 10.04 6.82 85.63 0.58 10.63 16 16 N -0.74 -39.38 5.59 -347.17 -1.94 -41.33 16 17 C -0.24 -13.79 9.99 84.04 0.84 -12.95 16 18 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 19 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 20 N -0.97 -61.29 13.06 21.66 0.28 -61.01 16 21 Si 0.98 46.71 29.55 68.60 2.03 48.73 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 N -0.31 -12.74 12.41 -48.60 -0.60 -13.34 16 26 N -0.09 -3.14 12.92 37.02 0.48 -2.66 16 27 H 0.08 0.33 7.65 -2.39 -0.02 0.31 16 28 H 0.06 0.56 7.65 -2.39 -0.02 0.54 16 29 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.17 0.77 6.28 -2.91 -0.02 0.75 16 31 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 32 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.16 0.91 7.97 -2.39 -0.02 0.89 16 34 H 0.12 1.63 7.68 -2.39 -0.02 1.61 16 35 H 0.23 4.15 8.06 -2.91 -0.02 4.12 16 36 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.37 21.60 7.66 -92.71 -0.71 20.89 16 39 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -82.92 353.73 5.60 -77.32 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.40 Total: 16.66 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 6.69 Total: 0.48 kcal Atomic # 7 Polarization: -134.40 SS G_CDS: -2.64 Total: -137.04 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.87 Total: -6.15 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -82.92 5.60 -77.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603237873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.139 kcal (2) G-P(sol) polarization free energy of solvation -82.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds