Wall clock time and date at job start Fri Apr 10 2020 18:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31353 * 1 3 3 Si 1.86796 * 119.99816 * 2 1 4 4 H 1.48501 * 109.47183 * 235.00262 * 3 2 1 5 5 H 1.48504 * 109.47435 * 355.00339 * 3 2 1 6 6 H 1.48502 * 109.47263 * 115.00214 * 3 2 1 7 7 C 1.39008 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99945 * 161.92484 * 7 2 1 9 9 N 1.36891 * 119.99718 * 342.20268 * 7 2 1 10 10 C 1.38217 * 125.61684 * 141.61035 * 9 7 2 11 11 C 1.46894 * 125.43719 * 359.97438 * 10 9 7 12 12 O 1.21662 * 119.99750 * 28.73530 * 11 10 9 13 13 N 1.34773 * 119.99971 * 208.72880 * 11 10 9 14 14 C 1.47268 * 121.35421 * 188.02504 * 13 11 10 15 15 C 1.53466 * 107.93432 * 118.51449 * 14 13 11 16 16 N 1.45645 * 110.74176 * 46.91370 * 15 14 13 17 17 C 1.33384 * 124.58463 * 337.98210 * 16 15 14 18 18 O 1.21283 * 118.48434 * 184.29868 * 17 16 15 19 19 C 1.47053 * 121.35230 * 8.30935 * 13 11 10 20 20 C 1.36125 * 109.12592 * 179.97438 * 10 9 7 21 21 C 1.41702 * 107.74627 * 359.97438 * 20 10 9 22 22 C 1.40018 * 133.35084 * 180.02562 * 21 20 10 23 23 C 1.36580 * 119.83259 * 179.97438 * 22 21 20 24 24 C 1.38856 * 120.59990 * 359.97438 * 23 22 21 25 25 C 1.37841 * 120.63151 * 0.02562 * 24 23 22 26 26 C 1.37828 * 125.62326 * 321.29415 * 9 7 2 27 27 H 0.97006 * 120.00061 * 5.04552 * 1 2 3 28 28 H 1.08995 * 109.71946 * 238.19395 * 14 13 11 29 29 H 1.09003 * 109.71831 * 358.84547 * 14 13 11 30 30 H 1.09000 * 109.32713 * 286.53016 * 15 14 13 31 31 H 1.08999 * 109.09931 * 167.15300 * 15 14 13 32 32 H 0.96995 * 117.71016 * 157.96017 * 16 15 14 33 33 H 1.08994 * 109.57270 * 342.53604 * 19 13 11 34 34 H 1.09004 * 109.56410 * 102.89515 * 19 13 11 35 35 H 1.07994 * 126.12617 * 179.97438 * 20 10 9 36 36 H 1.08006 * 120.08691 * 0.02562 * 22 21 20 37 37 H 1.08001 * 119.69857 * 179.97438 * 23 22 21 38 38 H 1.08001 * 119.68058 * 179.97438 * 24 23 22 39 39 H 1.07999 * 120.09357 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.1904 1.6450 -1.1469 5 1 1.2871 2.7438 -0.1219 6 1 3.0074 1.7506 1.2689 7 6 2.0086 -1.2038 0.0005 8 1 3.0486 -1.2270 -0.2896 9 7 1.3732 -2.3608 0.3634 10 6 1.5593 -3.5990 -0.2219 11 6 2.4724 -3.8857 -1.3363 12 8 3.4777 -3.2170 -1.4864 13 7 2.1967 -4.8895 -2.1923 14 6 3.1703 -5.3168 -3.2112 15 6 3.5322 -6.7821 -2.9338 16 7 2.3328 -7.5740 -2.6979 17 6 1.1599 -7.0734 -2.3070 18 8 0.2538 -7.8430 -2.0667 19 6 0.9090 -5.5984 -2.1507 20 6 0.7615 -4.5104 0.3991 21 6 0.0420 -3.8334 1.4150 22 6 -0.9068 -4.2457 2.3586 23 6 -1.4361 -3.3381 3.2312 24 6 -1.0416 -2.0073 3.1926 25 6 -0.1092 -1.5775 2.2729 26 6 0.4470 -2.4842 1.3766 27 1 -0.4850 0.8368 -0.0739 28 1 2.7280 -5.2263 -4.2033 29 1 4.0644 -4.6966 -3.1486 30 1 4.1754 -6.8348 -2.0554 31 1 4.0658 -7.1867 -3.7939 32 1 2.3910 -8.5324 -2.8349 33 1 0.4194 -5.4106 -1.1952 34 1 0.2731 -5.2481 -2.9638 35 1 0.6896 -5.5612 0.1604 36 1 -1.2188 -5.2790 2.3968 37 1 -2.1681 -3.6584 3.9578 38 1 -1.4701 -1.3021 3.8894 39 1 0.1911 -0.5404 2.2503 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609159324.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:32 Heat of formation + Delta-G solvation = 18.232771 kcal Electronic energy + Delta-G solvation = -26226.516218 eV Core-core repulsion = 22521.469743 eV Total energy + Delta-G solvation = -3705.046474 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.88747 -40.01733 -38.47963 -36.29319 -35.74894 -34.38283 -33.52086 -30.90197 -30.12849 -29.01162 -28.18675 -27.05940 -25.05152 -24.09091 -22.49416 -21.00397 -20.33467 -19.81409 -18.96596 -17.99035 -17.10926 -16.93937 -16.00040 -15.83078 -15.48407 -15.35527 -14.85387 -14.81040 -14.47913 -14.17244 -13.58281 -13.45623 -13.28301 -12.95750 -12.84174 -12.53734 -12.38805 -12.17700 -11.85935 -11.68305 -11.37575 -11.28119 -11.11985 -10.77178 -10.59673 -10.29115 -10.20774 -9.81494 -9.36669 -9.23181 -9.16912 -8.66376 -8.50666 -7.18869 -6.87311 -6.64086 -4.48249 1.79198 2.57311 2.75028 2.85045 2.98735 3.01428 3.04227 3.06231 3.28070 3.77379 4.04976 4.48193 4.50864 4.62554 4.69357 4.99419 5.04968 5.09591 5.32087 5.42111 5.63249 5.70454 5.73395 5.85394 5.95675 6.06885 6.28382 6.41242 6.52824 6.66635 6.70772 6.84250 6.98461 7.06479 7.14208 7.19006 7.43357 7.49940 7.58170 7.65917 7.91690 8.05673 8.12899 8.35738 8.57048 8.81031 9.25755 10.14398 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.005634 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.670247 B = 4968.405781 C = 6710.112155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.052 3.948 3 Si 0.933 3.067 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.345 4.345 8 H 0.122 0.878 9 N -0.223 5.223 10 C -0.025 4.025 11 C 0.604 3.396 12 O -0.529 6.529 13 N -0.618 5.618 14 C 0.100 3.900 15 C 0.097 3.903 16 N -0.720 5.720 17 C 0.516 3.484 18 O -0.550 6.550 19 C 0.062 3.938 20 C -0.225 4.225 21 C -0.117 4.117 22 C -0.094 4.094 23 C -0.152 4.152 24 C -0.155 4.155 25 C -0.046 4.046 26 C 0.082 3.918 27 H 0.284 0.716 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.397 0.603 33 H 0.164 0.836 34 H 0.100 0.900 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.474 -7.762 -4.088 9.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.162 4.162 3 Si 0.757 3.243 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.474 4.474 8 H 0.139 0.861 9 N 0.117 4.883 10 C -0.144 4.144 11 C 0.396 3.604 12 O -0.405 6.405 13 N -0.355 5.355 14 C -0.023 4.023 15 C -0.029 4.029 16 N -0.372 5.372 17 C 0.302 3.698 18 O -0.427 6.427 19 C -0.063 4.063 20 C -0.252 4.252 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.171 4.171 24 C -0.175 4.175 25 C -0.066 4.066 26 C -0.032 4.032 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.130 0.870 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.232 0.768 33 H 0.180 0.820 34 H 0.118 0.882 35 H 0.153 0.847 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.542 -7.030 -4.079 8.866 hybrid contribution 0.302 0.408 -0.397 0.644 sum 3.844 -6.622 -4.475 8.869 Atomic orbital electron populations 1.69975 1.06526 1.29741 1.38355 1.25738 0.95484 1.00881 0.94056 0.85879 0.79417 0.78966 0.80079 1.18829 1.20150 1.18811 1.20117 0.97200 0.82289 1.47773 0.86094 1.39921 1.25711 1.04985 1.17691 1.19460 1.05713 0.88854 1.00325 1.17198 0.84673 0.78266 0.80258 1.90739 1.28323 1.47778 1.73680 1.47731 1.16497 1.36679 1.34599 1.21950 0.95276 0.93565 0.91507 1.21871 0.86850 0.91980 1.02157 1.45382 1.10843 1.11598 1.69390 1.20503 0.81967 0.91737 0.75557 1.90779 1.42420 1.58953 1.50592 1.22837 0.87304 0.86495 1.09646 1.20365 1.03850 0.97589 1.03364 1.17916 1.01277 0.93149 0.99765 1.20046 0.97434 0.98194 0.95608 1.20287 1.02275 0.93773 1.00737 1.20545 1.00520 0.95648 1.00816 1.20107 0.95588 0.97938 0.92925 1.18144 0.98158 0.93980 0.92904 0.90556 0.90520 0.86989 0.91106 0.89478 0.76805 0.81977 0.88209 0.84689 0.87728 0.87912 0.87682 0.86848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.92 10.90 55.50 0.61 -20.32 16 2 C 0.05 1.29 4.43 -17.47 -0.08 1.21 16 3 Si 0.93 19.07 29.59 -169.99 -5.03 14.04 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.35 -9.10 9.15 -15.01 -0.14 -9.24 16 8 H 0.12 3.25 6.78 -52.49 -0.36 2.89 16 9 N -0.22 -5.80 2.83 -56.08 -0.16 -5.96 16 10 C -0.03 -0.59 6.39 -82.24 -0.53 -1.12 16 11 C 0.60 12.70 7.47 -12.76 -0.10 12.61 16 12 O -0.53 -12.31 14.88 5.22 0.08 -12.23 16 13 N -0.62 -9.96 2.97 -175.33 -0.52 -10.48 16 14 C 0.10 1.18 6.56 -3.38 -0.02 1.15 16 15 C 0.10 0.87 7.35 -4.26 -0.03 0.84 16 16 N -0.72 -7.82 5.42 -61.07 -0.33 -8.15 16 17 C 0.52 7.44 7.84 -11.73 -0.09 7.35 16 18 O -0.55 -9.67 17.80 5.56 0.10 -9.58 16 19 C 0.06 0.94 6.12 -5.02 -0.03 0.91 16 20 C -0.22 -4.83 8.67 -39.02 -0.34 -5.17 16 21 C -0.12 -2.69 6.16 -106.89 -0.66 -3.35 16 22 C -0.09 -1.90 10.06 -39.51 -0.40 -2.30 16 23 C -0.15 -2.92 9.97 -39.95 -0.40 -3.32 16 24 C -0.15 -3.16 10.02 -39.50 -0.40 -3.56 16 25 C -0.05 -1.09 8.55 -39.41 -0.34 -1.43 16 26 C 0.08 2.07 6.09 -83.84 -0.51 1.56 16 27 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.11 1.38 7.09 -51.93 -0.37 1.01 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.40 3.61 8.80 -40.82 -0.36 3.25 16 33 H 0.16 2.78 3.04 -51.93 -0.16 2.63 16 34 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.14 2.54 6.00 -52.49 -0.32 2.23 16 36 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 37 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.11 2.74 6.43 -52.49 -0.34 2.41 16 LS Contribution 323.73 15.07 4.88 4.88 Total: -1.00 -31.71 323.73 -8.42 -40.13 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -3.99 Total: 11.51 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -4.05 Total: -3.83 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.41 Total: -44.91 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.18 Total: -21.81 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.71 -8.42 -40.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609159324.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.358 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds