Wall clock time and date at job start Fri Apr 10 2020 18:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86802 * 119.99489 * 2 1 4 4 H 1.48499 * 109.47294 * 269.99978 * 3 2 1 5 5 H 1.48500 * 109.47206 * 30.00750 * 3 2 1 6 6 H 1.48508 * 109.46702 * 150.00596 * 3 2 1 7 7 C 1.39900 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99906 * 197.06855 * 7 2 1 9 9 C 1.41125 * 120.00167 * 17.07073 * 7 2 1 10 10 C 1.40891 * 120.15962 * 205.76021 * 9 7 2 11 11 C 1.36355 * 119.82993 * 180.26722 * 10 9 7 12 12 C 1.39526 * 120.16572 * 359.47094 * 11 10 9 13 13 N 1.39071 * 119.83668 * 180.27318 * 12 11 10 14 14 C 1.34778 * 120.00173 * 35.92002 * 13 12 11 15 15 O 1.21630 * 119.99779 * 355.50629 * 14 13 12 16 16 C 1.47232 * 119.99815 * 175.49971 * 14 13 12 17 17 N 1.30721 * 125.45199 * 0.02824 * 16 14 13 18 18 N 1.39115 * 108.45154 * 179.83434 * 17 16 14 19 19 C 1.46633 * 129.38466 * 181.23985 * 18 17 16 20 20 C 1.53671 * 107.26148 * 154.80492 * 19 18 17 21 21 C 1.52948 * 109.60048 * 52.35213 * 20 19 18 22 22 N 1.46738 * 110.51708 * 302.48038 * 21 20 19 23 23 C 1.30627 * 119.18637 * 31.65559 * 22 21 20 24 24 N 1.36267 * 129.73536 * 178.25965 * 23 22 21 25 25 C 1.39530 * 120.32347 * 0.28814 * 12 11 10 26 26 C 1.36344 * 120.16920 * 359.97438 * 25 12 11 27 27 H 0.96999 * 120.00610 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.08439 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.91370 * 179.73267 * 11 10 9 30 30 H 0.97007 * 119.99646 * 215.92498 * 13 12 11 31 31 H 1.09000 * 109.89500 * 274.23680 * 19 18 17 32 32 H 1.08998 * 109.90276 * 35.35987 * 19 18 17 33 33 H 1.08999 * 109.44595 * 292.31808 * 20 19 18 34 34 H 1.09000 * 109.45121 * 172.39695 * 20 19 18 35 35 H 1.09005 * 109.26409 * 182.21119 * 21 20 19 36 36 H 1.09000 * 109.23815 * 62.73408 * 21 20 19 37 37 H 0.96999 * 126.08192 * 1.30172 * 24 23 22 38 38 H 1.08006 * 119.91569 * 180.02562 * 25 12 11 39 39 H 1.07998 * 120.08935 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0466 -1.4000 5 1 1.4401 2.6527 0.7002 6 1 3.5403 1.4402 0.7000 7 6 2.0083 -1.2116 -0.0005 8 1 3.0526 -1.2323 0.2740 9 6 1.3493 -2.4067 -0.3598 10 6 1.8134 -3.6447 0.1268 11 6 1.1749 -4.7958 -0.2290 12 6 0.0580 -4.7487 -1.0639 13 7 -0.5913 -5.9265 -1.4179 14 6 -0.6937 -6.9334 -0.5279 15 8 -0.1482 -6.8450 0.5557 16 6 -1.4658 -8.1402 -0.8672 17 7 -2.0921 -8.3472 -1.9958 18 7 -2.6993 -9.5975 -1.9396 19 6 -3.4924 -10.2934 -2.9578 20 6 -3.3793 -11.7993 -2.6735 21 6 -3.7408 -12.0743 -1.2130 22 7 -2.8716 -11.3059 -0.3145 23 6 -2.4238 -10.1418 -0.7029 24 7 -1.6406 -9.2447 -0.0407 25 6 -0.4103 -3.5259 -1.5456 26 6 0.2210 -2.3671 -1.2027 27 1 -0.4851 0.8400 0.0004 28 1 2.6751 -3.6823 0.7769 29 1 1.5322 -5.7460 0.1397 30 1 -0.9706 -6.0233 -2.3055 31 1 -4.5347 -9.9811 -2.8936 32 1 -3.0985 -10.0726 -3.9499 33 1 -2.3576 -12.1286 -2.8625 34 1 -4.0623 -12.3441 -3.3252 35 1 -3.6209 -13.1379 -1.0069 36 1 -4.7786 -11.7893 -1.0401 37 1 -1.2726 -9.3556 0.8499 38 1 -1.2758 -3.4970 -2.1912 39 1 -0.1429 -1.4213 -1.5759 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610488348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:37 Heat of formation + Delta-G solvation = 91.828178 kcal Electronic energy + Delta-G solvation = -24390.485200 eV Core-core repulsion = 20720.922813 eV Total energy + Delta-G solvation = -3669.562387 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.14584 -39.75049 -37.58915 -37.03396 -34.80944 -34.14351 -33.15594 -31.28145 -30.88214 -29.66585 -29.03941 -26.30905 -24.87633 -23.96650 -23.34350 -21.71484 -20.90915 -20.21169 -19.56975 -18.34487 -17.51442 -17.17268 -16.77948 -16.31011 -15.73681 -15.46065 -15.25193 -14.71973 -14.54947 -14.07528 -13.99817 -13.95111 -13.50913 -13.12485 -12.76743 -12.22479 -12.08684 -12.00238 -11.93465 -11.79434 -11.45630 -11.19742 -11.17166 -11.04627 -10.86044 -10.34323 -10.32120 -9.71570 -9.69030 -9.40821 -9.28702 -9.07411 -7.75458 -7.64561 -7.13229 -6.85130 -4.40928 1.06052 1.76041 2.26617 2.32197 2.59305 3.00353 3.03586 3.03989 3.06113 3.36553 3.70134 3.85934 3.96380 4.41068 4.47091 4.52343 4.58517 4.89571 4.94171 5.14214 5.22487 5.32464 5.44753 5.59657 5.69668 5.74537 6.11614 6.20329 6.32093 6.57943 6.77773 6.83293 6.93480 7.04706 7.15670 7.39129 7.49639 7.59058 7.70234 7.92637 7.93813 8.08698 8.17057 8.37505 8.52153 8.77733 8.86936 10.06939 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.045242 B = 0.002359 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.743983 B =11868.323881 C =12187.777156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.452 4.452 8 H 0.081 0.919 9 C 0.110 3.890 10 C -0.218 4.218 11 C -0.069 4.069 12 C -0.024 4.024 13 N -0.610 5.610 14 C 0.578 3.422 15 O -0.512 6.512 16 C 0.257 3.743 17 N -0.242 5.242 18 N -0.474 5.474 19 C 0.159 3.841 20 C -0.166 4.166 21 C 0.077 3.923 22 N -0.628 5.628 23 C 0.558 3.442 24 N -0.610 5.610 25 C -0.102 4.102 26 C -0.155 4.155 27 H 0.283 0.717 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.406 0.594 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.449 0.551 38 H 0.093 0.907 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 -15.254 -6.918 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.481 4.481 8 H 0.099 0.901 9 C 0.107 3.893 10 C -0.238 4.238 11 C -0.089 4.089 12 C -0.117 4.117 13 N -0.252 5.252 14 C 0.359 3.641 15 O -0.385 6.385 16 C -0.025 4.025 17 N -0.067 5.067 18 N -0.286 5.286 19 C 0.038 3.962 20 C -0.206 4.206 21 C -0.054 4.054 22 N -0.374 5.374 23 C 0.194 3.806 24 N -0.247 5.247 25 C -0.122 4.122 26 C -0.175 4.175 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.242 0.758 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.293 0.707 38 H 0.112 0.888 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.009 -15.205 -6.561 17.982 hybrid contribution 0.062 0.559 -0.111 0.573 sum -6.947 -14.646 -6.672 17.529 Atomic orbital electron populations 1.69835 1.07625 1.29512 1.34221 1.25971 0.94787 1.01536 0.92211 0.86258 0.80504 0.80300 0.79395 1.19174 1.20251 1.18507 1.19626 0.98012 0.91139 1.39338 0.90109 1.17719 0.91096 0.92239 0.88216 1.20669 1.04166 0.92512 1.06476 1.20369 0.93378 0.98017 0.97121 1.17088 0.99024 0.83160 1.12385 1.42577 1.54092 1.13704 1.14825 1.16357 0.81564 0.81090 0.85043 1.90887 1.46314 1.78810 1.22515 1.23881 0.99676 0.91462 0.87503 1.76799 1.11268 1.00339 1.18295 1.49277 1.51160 1.13472 1.14675 1.21739 0.94158 0.90231 0.90026 1.22430 1.03953 0.94370 0.99879 1.21747 0.95976 0.99110 0.88559 1.72956 1.27856 1.04515 1.32095 1.20025 0.89932 0.88972 0.81691 1.42105 1.48861 1.14092 1.19681 1.20228 0.98956 0.91476 1.01509 1.20898 0.99365 0.96370 1.00881 0.90643 0.88449 0.87470 0.75849 0.90250 0.88648 0.90628 0.88700 0.89419 0.92235 0.70721 0.88843 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.53 10.97 55.55 0.61 -18.92 16 2 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 3 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.45 -11.51 9.03 -37.87 -0.34 -11.85 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.11 2.82 5.57 -106.80 -0.59 2.23 16 10 C -0.22 -5.28 9.74 -39.26 -0.38 -5.66 16 11 C -0.07 -1.57 8.60 -39.78 -0.34 -1.91 16 12 C -0.02 -0.52 6.29 -83.62 -0.53 -1.04 16 13 N -0.61 -10.49 5.29 -10.77 -0.06 -10.55 16 14 C 0.58 9.90 7.64 -12.61 -0.10 9.80 16 15 O -0.51 -10.20 14.54 5.25 0.08 -10.12 16 16 C 0.26 3.75 8.02 -153.06 -1.23 2.53 16 17 N -0.24 -3.32 12.21 32.65 0.40 -2.92 16 18 N -0.47 -5.89 4.12 -61.49 -0.25 -6.14 16 19 C 0.16 1.33 7.42 -3.62 -0.03 1.30 16 20 C -0.17 -1.18 6.12 -26.41 -0.16 -1.35 16 21 C 0.08 0.72 7.08 -3.94 -0.03 0.69 16 22 N -0.63 -8.27 11.08 -61.79 -0.68 -8.96 16 23 C 0.56 7.53 8.73 -320.86 -2.80 4.72 16 24 N -0.61 -8.21 6.22 -11.13 -0.07 -8.28 16 25 C -0.10 -2.21 9.90 -39.78 -0.39 -2.61 16 26 C -0.16 -3.81 8.63 -39.26 -0.34 -4.15 16 27 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 28 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 29 H 0.11 2.36 6.26 -52.49 -0.33 2.03 16 30 H 0.41 5.86 8.48 -40.82 -0.35 5.51 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.45 5.40 8.96 -40.82 -0.37 5.03 16 38 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.12 3.07 6.20 -52.49 -0.33 2.74 16 LS Contribution 334.31 15.07 5.04 5.04 Total: -1.00 -29.37 334.31 -11.62 -40.99 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -4.30 Total: 12.60 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -7.35 Total: -5.61 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.06 Total: -55.77 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.37 -11.62 -40.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610488348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.814 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds