Wall clock time and date at job start Fri Apr 10 2020 18:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86802 * 119.99489 * 2 1 4 4 H 1.48499 * 109.47294 * 269.99978 * 3 2 1 5 5 H 1.48500 * 109.47206 * 30.00750 * 3 2 1 6 6 H 1.48508 * 109.46702 * 150.00596 * 3 2 1 7 7 C 1.39900 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99906 * 197.06855 * 7 2 1 9 9 C 1.41125 * 120.00167 * 17.07073 * 7 2 1 10 10 C 1.40891 * 120.15962 * 205.76021 * 9 7 2 11 11 C 1.36355 * 119.82993 * 180.26722 * 10 9 7 12 12 C 1.39526 * 120.16572 * 359.47094 * 11 10 9 13 13 N 1.39071 * 119.83668 * 180.27318 * 12 11 10 14 14 C 1.34778 * 120.00173 * 35.92002 * 13 12 11 15 15 O 1.21630 * 119.99779 * 355.50629 * 14 13 12 16 16 C 1.47232 * 119.99815 * 175.49971 * 14 13 12 17 17 N 1.30721 * 125.45199 * 0.02824 * 16 14 13 18 18 N 1.39115 * 108.45154 * 179.83434 * 17 16 14 19 19 C 1.46633 * 129.38466 * 181.23985 * 18 17 16 20 20 C 1.53671 * 107.26148 * 154.80492 * 19 18 17 21 21 C 1.52948 * 109.60048 * 52.35213 * 20 19 18 22 22 N 1.46738 * 110.51708 * 302.48038 * 21 20 19 23 23 C 1.30627 * 119.18637 * 31.65559 * 22 21 20 24 24 N 1.36267 * 129.73536 * 178.25965 * 23 22 21 25 25 C 1.39530 * 120.32347 * 0.28814 * 12 11 10 26 26 C 1.36344 * 120.16920 * 359.97438 * 25 12 11 27 27 H 0.96999 * 120.00610 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.08439 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.91370 * 179.73267 * 11 10 9 30 30 H 0.97007 * 119.99646 * 215.92498 * 13 12 11 31 31 H 1.09000 * 109.89500 * 274.23680 * 19 18 17 32 32 H 1.08998 * 109.90276 * 35.35987 * 19 18 17 33 33 H 1.08999 * 109.44595 * 292.31808 * 20 19 18 34 34 H 1.09000 * 109.45121 * 172.39695 * 20 19 18 35 35 H 1.09005 * 109.26409 * 182.21119 * 21 20 19 36 36 H 1.09000 * 109.23815 * 62.73408 * 21 20 19 37 37 H 0.96999 * 126.08192 * 1.30172 * 24 23 22 38 38 H 1.08006 * 119.91569 * 180.02562 * 25 12 11 39 39 H 1.07998 * 120.08935 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0466 -1.4000 5 1 1.4401 2.6527 0.7002 6 1 3.5403 1.4402 0.7000 7 6 2.0083 -1.2116 -0.0005 8 1 3.0526 -1.2323 0.2740 9 6 1.3493 -2.4067 -0.3598 10 6 1.8134 -3.6447 0.1268 11 6 1.1749 -4.7958 -0.2290 12 6 0.0580 -4.7487 -1.0639 13 7 -0.5913 -5.9265 -1.4179 14 6 -0.6937 -6.9334 -0.5279 15 8 -0.1482 -6.8450 0.5557 16 6 -1.4658 -8.1402 -0.8672 17 7 -2.0921 -8.3472 -1.9958 18 7 -2.6993 -9.5975 -1.9396 19 6 -3.4924 -10.2934 -2.9578 20 6 -3.3793 -11.7993 -2.6735 21 6 -3.7408 -12.0743 -1.2130 22 7 -2.8716 -11.3059 -0.3145 23 6 -2.4238 -10.1418 -0.7029 24 7 -1.6406 -9.2447 -0.0407 25 6 -0.4103 -3.5259 -1.5456 26 6 0.2210 -2.3671 -1.2027 27 1 -0.4851 0.8400 0.0004 28 1 2.6751 -3.6823 0.7769 29 1 1.5322 -5.7460 0.1397 30 1 -0.9706 -6.0233 -2.3055 31 1 -4.5347 -9.9811 -2.8936 32 1 -3.0985 -10.0726 -3.9499 33 1 -2.3576 -12.1286 -2.8625 34 1 -4.0623 -12.3441 -3.3252 35 1 -3.6209 -13.1379 -1.0069 36 1 -4.7786 -11.7893 -1.0401 37 1 -1.2726 -9.3556 0.8499 38 1 -1.2758 -3.4970 -2.1912 39 1 -0.1429 -1.4213 -1.5759 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610488348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:36 Heat of formation + Delta-G solvation = 74.764665 kcal Electronic energy + Delta-G solvation = -24391.225129 eV Core-core repulsion = 20720.922813 eV Total energy + Delta-G solvation = -3670.302316 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.17831 -41.23535 -39.14840 -38.05533 -36.39836 -35.23357 -34.79266 -32.26361 -31.85212 -31.44924 -30.71717 -27.65757 -26.17256 -25.05421 -24.32327 -23.37875 -22.57841 -21.49395 -20.61873 -19.53331 -19.27382 -18.41187 -17.99751 -17.59396 -17.05723 -16.71484 -16.47538 -15.92066 -15.90475 -15.64189 -14.97667 -14.90515 -14.69064 -14.47574 -14.19250 -13.99331 -13.70516 -13.26263 -13.04822 -12.91548 -12.77164 -12.76131 -12.54095 -12.43372 -12.06659 -11.91182 -11.47483 -11.35686 -11.18861 -11.06444 -10.78017 -10.27267 -9.47748 -8.94915 -8.69173 -8.61904 -6.29658 -0.15747 0.81955 0.86961 1.14335 1.20395 1.32116 1.41626 1.51222 1.54423 1.93942 2.22409 2.48051 2.73367 2.98489 3.56523 3.72109 3.75131 3.86605 4.03933 4.19060 4.40076 4.50275 4.51850 4.53439 4.61512 4.66873 4.89146 4.98904 5.08067 5.10904 5.10985 5.26266 5.35831 5.38895 5.65764 5.82011 5.86543 5.94136 6.07457 6.33500 6.35790 6.54420 6.63965 6.88575 6.91894 7.01165 7.08532 8.31320 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.045242 B = 0.002359 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.743983 B =11868.323881 C =12187.777156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.490 4.490 8 H 0.077 0.923 9 C 0.080 3.920 10 C -0.234 4.234 11 C -0.078 4.078 12 C -0.007 4.007 13 N -0.605 5.605 14 C 0.589 3.411 15 O -0.541 6.541 16 C 0.246 3.754 17 N -0.231 5.231 18 N -0.471 5.471 19 C 0.146 3.854 20 C -0.155 4.155 21 C 0.066 3.934 22 N -0.649 5.649 23 C 0.544 3.456 24 N -0.610 5.610 25 C -0.099 4.099 26 C -0.174 4.174 27 H 0.290 0.710 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.422 0.578 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.133 0.867 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.452 0.548 38 H 0.125 0.875 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.294 -16.539 -8.478 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.519 4.519 8 H 0.095 0.905 9 C 0.077 3.923 10 C -0.254 4.254 11 C -0.098 4.098 12 C -0.100 4.100 13 N -0.249 5.249 14 C 0.372 3.628 15 O -0.416 6.416 16 C -0.036 4.036 17 N -0.057 5.057 18 N -0.284 5.284 19 C 0.027 3.973 20 C -0.194 4.194 21 C -0.063 4.063 22 N -0.395 5.395 23 C 0.180 3.820 24 N -0.249 5.249 25 C -0.119 4.119 26 C -0.194 4.194 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.261 0.739 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.151 0.849 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.296 0.704 38 H 0.143 0.857 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.462 -16.543 -8.151 20.291 hybrid contribution 0.353 0.651 0.336 0.813 sum -8.109 -15.892 -7.815 19.478 Atomic orbital electron populations 1.69873 1.08922 1.30803 1.34891 1.26769 0.95535 1.04515 0.91215 0.85172 0.78969 0.75779 0.79626 1.18405 1.19352 1.18415 1.19833 0.98191 0.92343 1.41498 0.90479 1.18037 0.92134 0.92907 0.89186 1.20807 1.04690 0.92896 1.07030 1.20499 0.93956 0.97683 0.97651 1.17093 0.98008 0.84437 1.10428 1.42393 1.54110 1.12616 1.15824 1.16471 0.80659 0.81350 0.84302 1.90876 1.47398 1.79572 1.23772 1.23104 1.00832 0.91173 0.88450 1.76727 1.10291 1.01174 1.17549 1.49720 1.50787 1.12716 1.15153 1.22218 0.94589 0.90559 0.89917 1.22389 1.04332 0.93827 0.98863 1.21947 0.95665 0.99110 0.89618 1.72907 1.28097 1.04516 1.33938 1.20122 0.90411 0.89308 0.82166 1.42111 1.49043 1.13889 1.19815 1.20472 0.99368 0.90734 1.01353 1.20902 0.99865 0.96989 1.01603 0.89890 0.88388 0.86995 0.73937 0.88650 0.86882 0.91578 0.84944 0.88435 0.91428 0.70424 0.85702 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.48 10.97 21.82 0.24 -41.25 16 2 C 0.04 1.73 5.14 85.24 0.44 2.17 16 3 Si 0.98 37.07 29.59 68.60 2.03 39.10 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.49 -25.85 9.03 23.38 0.21 -25.64 16 8 H 0.08 3.94 7.90 -2.91 -0.02 3.92 16 9 C 0.08 4.25 5.57 -21.27 -0.12 4.13 16 10 C -0.23 -11.71 9.74 22.48 0.22 -11.49 16 11 C -0.08 -3.59 8.60 22.14 0.19 -3.39 16 12 C -0.01 -0.28 6.29 38.62 0.24 -0.03 16 13 N -0.61 -19.99 5.29 -306.23 -1.62 -21.61 16 14 C 0.59 19.65 7.64 86.61 0.66 20.31 16 15 O -0.54 -21.49 14.54 -4.13 -0.06 -21.55 16 16 C 0.25 6.87 8.02 135.69 1.09 7.96 16 17 N -0.23 -5.85 12.21 -50.62 -0.62 -6.47 16 18 N -0.47 -10.54 4.12 -348.46 -1.43 -11.97 16 19 C 0.15 1.93 7.42 86.58 0.64 2.57 16 20 C -0.15 -1.66 6.12 30.80 0.19 -1.47 16 21 C 0.07 1.07 7.08 86.32 0.61 1.68 16 22 N -0.65 -16.00 11.08 -349.40 -3.87 -19.87 16 23 C 0.54 13.81 8.73 260.81 2.28 16.09 16 24 N -0.61 -15.89 6.22 -189.13 -1.18 -17.07 16 25 C -0.10 -4.27 9.90 22.14 0.22 -4.05 16 26 C -0.17 -8.70 8.63 22.48 0.19 -8.50 16 27 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 28 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 29 H 0.11 4.99 6.26 -2.91 -0.02 4.97 16 30 H 0.42 11.27 8.48 -92.70 -0.79 10.49 16 31 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.45 10.77 8.96 -92.71 -0.83 9.94 16 38 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.11 5.75 6.20 -2.91 -0.02 5.73 16 Total: -1.00 -64.67 334.31 0.07 -64.61 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.49 Total: 35.77 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 7.06 Total: 0.32 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -8.48 Total: -118.25 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.06 Total: -21.55 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -64.67 0.07 -64.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610488348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.372 kcal (2) G-P(sol) polarization free energy of solvation -64.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds