Wall clock time and date at job start Fri Apr 10 2020 18:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31350 * 1 3 3 Si 1.86791 * 120.00225 * 2 1 4 4 H 1.48497 * 109.47661 * 274.89761 * 3 2 1 5 5 H 1.48508 * 109.47188 * 34.90017 * 3 2 1 6 6 H 1.48509 * 109.47140 * 154.89861 * 3 2 1 7 7 C 1.39013 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00272 * 3.94194 * 7 2 1 9 9 N 1.36895 * 119.99669 * 183.93654 * 7 2 1 10 10 C 1.38210 * 125.61777 * 126.25231 * 9 7 2 11 11 C 1.46884 * 125.43744 * 0.03403 * 10 9 7 12 12 O 1.21670 * 119.99747 * 185.54890 * 11 10 9 13 13 N 1.34779 * 119.99962 * 5.55471 * 11 10 9 14 14 C 1.46500 * 119.99534 * 184.75197 * 13 11 10 15 15 H 1.08997 * 110.86298 * 27.41143 * 14 13 11 16 16 C 1.54479 * 110.97175 * 263.57354 * 14 13 11 17 17 N 1.46763 * 105.47639 * 216.47262 * 16 14 13 18 18 C 1.34419 * 111.29839 * 17.01257 * 17 16 14 19 19 O 1.21287 * 124.94204 * 179.55757 * 18 17 16 20 20 C 1.51282 * 110.11858 * 359.59637 * 18 17 16 21 21 C 1.36128 * 109.12524 * 180.02562 * 10 9 7 22 22 C 1.41701 * 107.74837 * 359.97438 * 21 10 9 23 23 C 1.40019 * 133.34752 * 179.97438 * 22 21 10 24 24 C 1.36575 * 119.82882 * 180.02562 * 23 22 21 25 25 C 1.38855 * 120.60014 * 0.02562 * 24 23 22 26 26 C 1.37840 * 120.63516 * 0.25093 * 25 24 23 27 27 C 1.37837 * 125.61900 * 306.27301 * 9 7 2 28 28 H 0.97004 * 119.99696 * 5.00219 * 1 2 3 29 29 H 0.97000 * 120.00131 * 4.75622 * 13 11 10 30 30 H 1.09009 * 110.24590 * 335.46884 * 16 14 13 31 31 H 1.08996 * 110.24628 * 97.46848 * 16 14 13 32 32 H 0.96998 * 124.34948 * 197.04455 * 17 16 14 33 33 H 1.08998 * 110.48958 * 225.06564 * 20 18 17 34 34 H 1.09002 * 110.48592 * 102.42560 * 20 18 17 35 35 H 1.07995 * 126.12737 * 179.97438 * 21 10 9 36 36 H 1.07998 * 120.08802 * 0.02562 * 23 22 21 37 37 H 1.08003 * 119.69893 * 179.97438 * 24 23 22 38 38 H 1.08008 * 119.68079 * 179.97438 * 25 24 23 39 39 H 1.07999 * 120.09456 * 179.70608 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6176 0.0000 4 1 2.3916 2.1062 -1.3949 5 1 1.5006 2.6205 0.8011 6 1 3.5931 1.4123 0.5940 7 6 2.0085 -1.2039 0.0005 8 1 1.4704 -2.1381 -0.0633 9 7 3.3750 -1.2054 0.0819 10 6 4.1253 -1.9009 1.0112 11 6 3.5835 -2.7600 2.0723 12 8 4.3294 -3.2470 2.9010 13 7 2.2600 -3.0089 2.1279 14 6 1.7059 -3.7790 3.2441 15 1 2.3223 -3.6680 4.1362 16 6 1.5459 -5.2675 2.8634 17 7 0.3120 -5.7102 3.5232 18 6 -0.4417 -4.6635 3.9019 19 8 -1.5146 -4.7463 4.4614 20 6 0.2427 -3.3672 3.5280 21 6 5.4465 -1.6628 0.7860 22 6 5.5446 -0.7871 -0.3237 23 6 6.6262 -0.2072 -0.9977 24 6 6.3999 0.6184 -2.0619 25 6 5.1049 0.8896 -2.4832 26 6 4.0238 0.3351 -1.8321 27 6 4.2294 -0.5130 -0.7491 28 1 -0.4850 0.8369 -0.0733 29 1 1.6745 -2.6781 1.4288 30 1 1.4540 -5.3726 1.7823 31 1 2.3963 -5.8436 3.2281 32 1 0.0714 -6.6386 3.6679 33 1 0.1992 -2.6600 4.3563 34 1 -0.2132 -2.9389 2.6352 35 1 6.2721 -2.0687 1.3517 36 1 7.6369 -0.4121 -0.6769 37 1 7.2357 1.0649 -2.5801 38 1 4.9429 1.5450 -3.3263 39 1 3.0201 0.5558 -2.1642 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612566202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:05 Heat of formation + Delta-G solvation = 0.369044 kcal Electronic energy + Delta-G solvation = -25833.527907 eV Core-core repulsion = 22127.706804 eV Total energy + Delta-G solvation = -3705.821104 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.01394 -40.28737 -38.64000 -36.47042 -36.25561 -34.04196 -33.41991 -31.57769 -30.33470 -29.28448 -28.41120 -27.16124 -25.05196 -23.71410 -21.48811 -21.28726 -20.66407 -20.25454 -19.48374 -18.59529 -17.40466 -17.02257 -16.16249 -15.99538 -15.52291 -15.11273 -14.75060 -14.67845 -14.39299 -13.99962 -13.90870 -13.47798 -13.40430 -13.31026 -13.29835 -12.88069 -12.83787 -12.33169 -12.10505 -11.75027 -11.55526 -11.30697 -11.14815 -10.91384 -10.64708 -10.29641 -10.12516 -10.00905 -9.62117 -9.44054 -9.15669 -8.88083 -8.78306 -7.46079 -7.14573 -6.93677 -4.96505 1.43022 2.34272 2.61191 2.68306 2.91201 3.05039 3.15062 3.28049 3.53766 3.78032 3.94397 4.04683 4.38562 4.47922 4.57358 4.59452 4.94563 5.07341 5.36446 5.46921 5.55058 5.56039 5.57164 5.76289 5.88454 5.97666 6.03861 6.09099 6.28369 6.45489 6.60093 6.67694 6.73406 6.78900 6.96324 7.07275 7.11682 7.18856 7.41842 7.47205 7.53041 7.90120 8.05201 8.23326 8.45713 8.68711 8.89061 9.98803 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.004716 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.895905 B = 5935.428743 C = 7123.829630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.088 3.912 3 Si 0.881 3.119 4 H -0.256 1.256 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.377 4.377 8 H 0.120 0.880 9 N -0.287 5.287 10 C -0.003 4.003 11 C 0.599 3.401 12 O -0.552 6.552 13 N -0.713 5.713 14 C 0.135 3.865 15 H 0.111 0.889 16 C 0.088 3.912 17 N -0.730 5.730 18 C 0.526 3.474 19 O -0.538 6.538 20 C -0.166 4.166 21 C -0.154 4.154 22 C -0.127 4.127 23 C -0.071 4.071 24 C -0.162 4.162 25 C -0.119 4.119 26 C -0.124 4.124 27 C 0.080 3.920 28 H 0.289 0.711 29 H 0.423 0.577 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.409 0.591 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.787 -3.352 -0.029 5.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.126 4.126 3 Si 0.706 3.294 4 H -0.181 1.181 5 H -0.212 1.212 6 H -0.169 1.169 7 C -0.504 4.504 8 H 0.137 0.863 9 N 0.046 4.954 10 C -0.117 4.117 11 C 0.388 3.612 12 O -0.431 6.431 13 N -0.374 5.374 14 C 0.028 3.972 15 H 0.129 0.871 16 C -0.039 4.039 17 N -0.386 5.386 18 C 0.312 3.688 19 O -0.415 6.415 20 C -0.206 4.206 21 C -0.181 4.181 22 C -0.132 4.132 23 C -0.090 4.090 24 C -0.182 4.182 25 C -0.139 4.139 26 C -0.143 4.143 27 C -0.033 4.033 28 H 0.100 0.900 29 H 0.270 0.730 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.247 0.753 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.158 0.842 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.094 -3.530 0.918 5.484 hybrid contribution -0.202 0.586 -0.516 0.806 sum 3.893 -2.945 0.401 4.898 Atomic orbital electron populations 1.69568 1.06228 1.30264 1.40034 1.25518 0.95449 0.99666 0.92014 0.86772 0.81241 0.81396 0.79942 1.18088 1.21186 1.16872 1.19024 0.77428 0.96159 1.57749 0.86339 1.40239 1.04851 1.32255 1.18061 1.20257 0.91631 1.04714 0.95095 1.17215 0.81773 0.78914 0.83280 1.90743 1.58750 1.52586 1.40978 1.46710 1.08982 1.54913 1.26785 1.21661 0.93902 0.89474 0.92136 0.87099 1.22615 0.86638 0.96261 0.98338 1.46214 1.22540 1.09085 1.60739 1.20789 0.84097 0.86972 0.76893 1.90745 1.21133 1.86906 1.42702 1.22691 0.95221 0.96814 1.05919 1.20529 0.94255 1.03305 1.00042 1.18047 0.92552 1.03041 0.99589 1.20223 0.96893 0.96672 0.95168 1.20391 0.96286 1.02223 0.99262 1.20642 0.92179 1.01022 1.00044 1.20243 0.99519 0.98670 0.95896 1.18534 0.89697 1.00259 0.94803 0.90030 0.72960 0.90410 0.89564 0.75306 0.87263 0.86217 0.84202 0.86926 0.87063 0.86784 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.80 13.95 55.50 0.77 -19.02 16 2 C 0.09 2.06 5.49 -17.47 -0.10 1.96 16 3 Si 0.88 19.23 23.53 -169.99 -4.00 15.23 16 4 H -0.26 -5.29 6.06 56.52 0.34 -4.95 16 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.25 -5.74 6.24 56.52 0.35 -5.38 16 7 C -0.38 -8.57 8.30 -15.00 -0.12 -8.70 16 8 H 0.12 2.69 6.44 -52.49 -0.34 2.36 16 9 N -0.29 -6.39 2.41 -56.08 -0.14 -6.53 16 10 C 0.00 -0.07 6.77 -82.25 -0.56 -0.63 16 11 C 0.60 11.77 7.77 -12.76 -0.10 11.67 16 12 O -0.55 -11.38 16.47 5.22 0.09 -11.30 16 13 N -0.71 -12.18 5.01 -53.46 -0.27 -12.45 16 14 C 0.14 1.89 3.56 -66.30 -0.24 1.66 16 15 H 0.11 1.57 7.50 -51.93 -0.39 1.18 16 16 C 0.09 1.02 7.52 -3.12 -0.02 1.00 16 17 N -0.73 -8.47 6.24 -59.20 -0.37 -8.84 16 18 C 0.53 7.72 8.43 -10.86 -0.09 7.63 16 19 O -0.54 -9.85 18.03 5.55 0.10 -9.75 16 20 C -0.17 -2.30 6.59 -26.74 -0.18 -2.47 16 21 C -0.15 -3.11 10.55 -39.02 -0.41 -3.52 16 22 C -0.13 -2.59 6.16 -106.89 -0.66 -3.25 16 23 C -0.07 -1.23 10.06 -39.51 -0.40 -1.62 16 24 C -0.16 -2.63 9.97 -39.95 -0.40 -3.03 16 25 C -0.12 -2.06 10.02 -39.50 -0.40 -2.46 16 26 C -0.12 -2.51 6.87 -39.41 -0.27 -2.78 16 27 C 0.08 1.76 4.58 -83.83 -0.38 1.37 16 28 H 0.29 6.48 8.31 -40.82 -0.34 6.14 16 29 H 0.42 7.69 4.35 -40.82 -0.18 7.51 16 30 H 0.08 0.92 8.07 -51.92 -0.42 0.50 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.41 3.88 8.96 -40.82 -0.37 3.51 16 33 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.12 1.77 7.84 -51.93 -0.41 1.36 16 35 H 0.14 2.54 8.06 -52.49 -0.42 2.12 16 36 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 38 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.12 2.50 5.70 -52.49 -0.30 2.20 16 LS Contribution 323.37 15.07 4.87 4.87 Total: -1.00 -27.86 323.37 -7.43 -35.30 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -4.18 Total: 15.64 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -4.32 Total: -3.17 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.00 Total: -46.83 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.19 Total: -21.04 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.00 Total: 15.23 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.86 -7.43 -35.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612566202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.668 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds