Wall clock time and date at job start Fri Apr 10 2020 18:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48496 * 109.47269 * 270.00079 * 3 2 1 5 5 H 1.48498 * 109.47209 * 30.00693 * 3 2 1 6 6 H 1.48506 * 109.47266 * 150.00131 * 3 2 1 7 7 C 1.38654 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00272 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00013 * 185.05824 * 9 7 2 11 11 C 1.38874 * 120.06890 * 354.46142 * 10 9 7 12 12 C 1.38104 * 119.93265 * 180.29770 * 11 10 9 13 13 C 1.38305 * 120.06272 * 359.47314 * 12 11 10 14 14 C 1.50701 * 119.92910 * 180.25358 * 13 12 11 15 15 N 1.46498 * 109.47235 * 270.25475 * 14 13 12 16 16 C 1.34523 * 126.74640 * 124.70957 * 15 14 13 17 17 N 1.30682 * 108.28518 * 179.89086 * 16 15 14 18 18 C 1.33955 * 109.78029 * 0.38300 * 17 16 15 19 19 C 1.48489 * 125.64426 * 179.72514 * 18 17 16 20 20 N 1.34049 * 126.67321 * 180.02562 * 19 18 17 21 21 N 1.28981 * 107.26723 * 179.97438 * 20 19 18 22 22 N 1.28733 * 108.94395 * 0.02562 * 21 20 19 23 23 H 0.96994 * 125.34272 * 179.97438 * 22 21 20 24 24 N 1.28875 * 109.31746 * 359.76342 * 22 21 20 25 25 N 1.31464 * 108.71181 * 359.76394 * 18 17 16 26 26 C 1.38302 * 120.13938 * 0.50581 * 13 12 11 27 27 C 1.38094 * 120.07047 * 359.77109 * 26 13 12 28 28 H 0.97006 * 119.99724 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.03972 * 0.02808 * 11 10 9 30 30 H 1.07990 * 119.96890 * 179.72053 * 12 11 10 31 31 H 1.09006 * 109.46946 * 30.25429 * 14 13 12 32 32 H 1.08998 * 109.47253 * 150.25176 * 14 13 12 33 33 H 1.07994 * 125.85581 * 0.03793 * 16 15 14 34 34 H 1.08006 * 119.96431 * 179.74134 * 26 13 12 35 35 H 1.08005 * 120.03539 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4472 2.6526 0.7002 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4570 -3.4395 0.0920 12 6 4.2023 -4.5978 0.1940 13 6 3.5685 -5.8205 0.3204 14 6 4.3848 -7.0820 0.4372 15 7 4.6417 -7.6229 -0.8998 16 6 5.8422 -7.9076 -1.4358 17 7 5.6527 -8.3723 -2.6424 18 6 4.3424 -8.3929 -2.9197 19 6 3.7348 -8.8502 -4.1951 20 7 2.4285 -8.8793 -4.4946 21 7 2.3210 -9.3401 -5.6944 22 7 3.4971 -9.5975 -6.1503 23 1 3.6918 -9.9546 -7.0308 24 7 4.3755 -9.3022 -5.2547 25 7 3.6833 -7.9405 -1.8760 26 6 2.1872 -5.8886 0.3346 27 6 1.4365 -4.7345 0.2274 28 1 -0.4850 0.8401 0.0004 29 1 3.9526 -2.4846 -0.0025 30 1 5.2809 -4.5483 0.1790 31 1 5.3325 -6.8574 0.9266 32 1 3.8363 -7.8163 1.0271 33 1 6.7984 -7.7769 -0.9512 34 1 1.6952 -6.8454 0.4293 35 1 0.3578 -4.7884 0.2381 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737697172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:26 Heat of formation + Delta-G solvation = 224.745508 kcal Electronic energy + Delta-G solvation = -23844.389403 eV Core-core repulsion = 20077.050401 eV Total energy + Delta-G solvation = -3767.339002 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.64152 -42.11765 -39.14827 -36.95836 -34.75766 -34.27009 -33.15496 -32.32657 -31.32186 -30.28864 -29.83469 -26.50593 -25.36256 -24.84919 -24.33263 -22.17010 -22.07744 -21.22524 -20.53962 -19.27096 -18.09962 -17.44727 -17.36305 -17.02026 -15.89331 -15.53901 -14.97456 -14.75082 -14.61764 -14.36397 -14.05392 -13.68282 -13.65877 -13.12221 -12.80245 -12.49053 -12.45521 -11.89246 -11.76738 -11.55062 -11.41512 -11.33645 -11.29695 -11.00051 -10.92015 -10.72169 -10.49915 -10.15682 -9.86853 -9.45633 -9.39645 -8.92719 -8.27761 -7.35581 -6.53901 -4.12646 0.77555 1.23332 1.69265 1.92804 2.03836 2.15150 2.55964 3.07701 3.08455 3.08851 3.13617 3.24497 3.84663 3.89539 4.42660 4.50098 4.60481 4.93717 5.01331 5.04302 5.17574 5.22882 5.29954 5.35427 5.55540 5.75490 5.98760 6.09460 6.12484 6.17864 6.31225 6.57532 6.69917 6.79081 6.93978 7.13653 7.20872 7.34057 7.70241 7.83088 7.90617 8.02742 8.91043 9.59190 10.63468 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.002908 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.376309 B = 9625.968587 C =10397.032523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.171 6.171 10 C 0.166 3.834 11 C -0.239 4.239 12 C -0.048 4.048 13 C -0.224 4.224 14 C 0.184 3.816 15 N -0.354 5.354 16 C 0.252 3.748 17 N -0.520 5.520 18 C 0.282 3.718 19 C 0.268 3.732 20 N -0.240 5.240 21 N -0.049 5.049 22 N -0.228 5.228 23 H 0.477 0.523 24 N -0.259 5.259 25 N -0.241 5.241 26 C -0.035 4.035 27 C -0.195 4.195 28 H 0.272 0.728 29 H 0.128 0.872 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.225 0.775 34 H 0.115 0.885 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.694 -16.617 -4.160 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.073 6.073 10 C 0.110 3.890 11 C -0.259 4.259 12 C -0.067 4.067 13 C -0.226 4.226 14 C 0.065 3.935 15 N -0.146 5.146 16 C -0.044 4.044 17 N -0.248 5.248 18 C -0.001 4.001 19 C -0.015 4.015 20 N -0.115 5.115 21 N -0.044 5.044 22 N -0.074 5.074 23 H 0.332 0.668 24 N -0.114 5.114 25 N -0.074 5.074 26 C -0.053 4.053 27 C -0.215 4.215 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.112 0.888 33 H 0.241 0.759 34 H 0.133 0.867 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.236 -16.505 -4.628 19.966 hybrid contribution 1.216 0.912 -0.109 1.524 sum 11.453 -15.593 -4.738 19.919 Atomic orbital electron populations 1.70038 1.06025 1.27928 1.45135 1.25330 0.95868 0.98962 0.96293 0.85690 0.78930 0.79883 0.78819 1.19785 1.20126 1.19106 1.21364 0.91869 0.80720 1.53038 0.88914 1.83982 1.34559 1.11599 1.77149 1.19454 0.90298 0.88047 0.91167 1.21102 0.93815 0.98862 1.12095 1.20553 0.98110 0.91762 0.96299 1.19010 0.93824 0.92605 1.17161 1.20699 1.01414 0.94295 0.77102 1.51156 1.04130 1.45491 1.13859 1.26062 0.92680 0.95703 0.89989 1.70415 1.15845 1.23886 1.14693 1.19558 0.87951 1.01938 0.90621 1.21373 0.86777 1.01490 0.91878 1.76271 1.16026 1.14974 1.04198 1.79005 1.07441 1.12615 1.05364 1.47813 1.01888 1.41393 1.16331 0.66828 1.75062 1.19713 1.17628 0.98959 1.78473 1.13105 1.18175 0.97598 1.20471 0.92538 0.96876 0.95460 1.20219 0.99810 0.90217 1.11208 0.91817 0.85420 0.87572 0.87565 0.88801 0.75898 0.86748 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.85 13.67 55.48 0.76 -24.09 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.15 29.55 -169.99 -5.02 15.12 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.39 -10.83 9.49 30.89 0.29 -10.53 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 9 O -0.17 -4.82 9.76 0.04 0.00 -4.82 16 10 C 0.17 3.93 6.65 -39.11 -0.26 3.67 16 11 C -0.24 -5.00 9.17 -39.40 -0.36 -5.36 16 12 C -0.05 -0.81 9.69 -39.61 -0.38 -1.20 16 13 C -0.22 -3.47 5.34 -104.57 -0.56 -4.02 16 14 C 0.18 1.98 6.67 -5.19 -0.03 1.94 16 15 N -0.35 -4.51 3.68 -63.83 -0.24 -4.74 16 16 C 0.25 2.71 12.61 -90.69 -1.14 1.57 16 17 N -0.52 -7.34 11.21 -12.37 -0.14 -7.48 16 18 C 0.28 4.46 8.08 -156.64 -1.27 3.20 16 19 C 0.27 4.05 8.31 -156.29 -1.30 2.76 16 20 N -0.24 -3.72 12.54 32.16 0.40 -3.31 16 21 N -0.05 -0.60 13.47 60.35 0.81 0.22 16 22 N -0.23 -2.05 7.90 60.35 0.48 -1.58 16 23 H 0.48 1.64 8.96 -340.37 -3.05 -1.41 16 24 N -0.26 -3.24 12.40 32.18 0.40 -2.84 16 25 N -0.24 -3.93 12.59 32.11 0.40 -3.52 16 26 C -0.03 -0.60 9.69 -39.61 -0.38 -0.98 16 27 C -0.20 -4.09 9.99 -39.40 -0.39 -4.48 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16 30 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.11 0.73 8.03 -51.93 -0.42 0.32 16 32 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.22 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 35 H 0.12 2.45 8.06 -52.48 -0.42 2.02 16 LS Contribution 325.74 15.07 4.91 4.91 Total: -1.00 -36.11 325.74 -8.40 -44.51 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.28 Total: 0.06 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -5.89 Total: -12.44 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 2.88 Total: -47.34 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: 0.00 Total: -4.82 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.11 -8.40 -44.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737697172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 269.254 kcal (2) G-P(sol) polarization free energy of solvation -36.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 233.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 224.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds