Wall clock time and date at job start Fri Apr 10 2020 18:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48496 * 109.47269 * 270.00079 * 3 2 1 5 5 H 1.48498 * 109.47209 * 30.00693 * 3 2 1 6 6 H 1.48506 * 109.47266 * 150.00131 * 3 2 1 7 7 C 1.38654 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00272 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00013 * 185.05824 * 9 7 2 11 11 C 1.38874 * 120.06890 * 354.46142 * 10 9 7 12 12 C 1.38104 * 119.93265 * 180.29770 * 11 10 9 13 13 C 1.38305 * 120.06272 * 359.47314 * 12 11 10 14 14 C 1.50701 * 119.92910 * 180.25358 * 13 12 11 15 15 N 1.46498 * 109.47235 * 270.25475 * 14 13 12 16 16 C 1.34523 * 126.74640 * 124.70957 * 15 14 13 17 17 N 1.30682 * 108.28518 * 179.89086 * 16 15 14 18 18 C 1.33955 * 109.78029 * 0.38300 * 17 16 15 19 19 C 1.48489 * 125.64426 * 179.72514 * 18 17 16 20 20 N 1.34049 * 126.67321 * 180.02562 * 19 18 17 21 21 N 1.28981 * 107.26723 * 179.97438 * 20 19 18 22 22 N 1.28733 * 108.94395 * 0.02562 * 21 20 19 23 23 H 0.96994 * 125.34272 * 179.97438 * 22 21 20 24 24 N 1.28875 * 109.31746 * 359.76342 * 22 21 20 25 25 N 1.31464 * 108.71181 * 359.76394 * 18 17 16 26 26 C 1.38302 * 120.13938 * 0.50581 * 13 12 11 27 27 C 1.38094 * 120.07047 * 359.77109 * 26 13 12 28 28 H 0.97006 * 119.99724 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.03972 * 0.02808 * 11 10 9 30 30 H 1.07990 * 119.96890 * 179.72053 * 12 11 10 31 31 H 1.09006 * 109.46946 * 30.25429 * 14 13 12 32 32 H 1.08998 * 109.47253 * 150.25176 * 14 13 12 33 33 H 1.07994 * 125.85581 * 0.03793 * 16 15 14 34 34 H 1.08006 * 119.96431 * 179.74134 * 26 13 12 35 35 H 1.08005 * 120.03539 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4472 2.6526 0.7002 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4570 -3.4395 0.0920 12 6 4.2023 -4.5978 0.1940 13 6 3.5685 -5.8205 0.3204 14 6 4.3848 -7.0820 0.4372 15 7 4.6417 -7.6229 -0.8998 16 6 5.8422 -7.9076 -1.4358 17 7 5.6527 -8.3723 -2.6424 18 6 4.3424 -8.3929 -2.9197 19 6 3.7348 -8.8502 -4.1951 20 7 2.4285 -8.8793 -4.4946 21 7 2.3210 -9.3401 -5.6944 22 7 3.4971 -9.5975 -6.1503 23 1 3.6918 -9.9546 -7.0308 24 7 4.3755 -9.3022 -5.2547 25 7 3.6833 -7.9405 -1.8760 26 6 2.1872 -5.8886 0.3346 27 6 1.4365 -4.7345 0.2274 28 1 -0.4850 0.8401 0.0004 29 1 3.9526 -2.4846 -0.0025 30 1 5.2809 -4.5483 0.1790 31 1 5.3325 -6.8574 0.9266 32 1 3.8363 -7.8163 1.0271 33 1 6.7984 -7.7769 -0.9512 34 1 1.6952 -6.8454 0.4293 35 1 0.3578 -4.7884 0.2381 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737697172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:24 Heat of formation + Delta-G solvation = 198.484330 kcal Electronic energy + Delta-G solvation = -23845.528173 eV Core-core repulsion = 20077.050401 eV Total energy + Delta-G solvation = -3768.477772 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.103 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -45.60941 -43.07906 -40.80487 -38.55515 -35.79882 -35.32521 -34.41312 -33.99952 -32.32829 -31.82170 -31.16313 -27.92227 -27.00203 -25.82469 -25.43627 -23.69149 -23.13400 -22.31340 -21.86341 -20.18033 -19.89769 -18.94626 -18.32661 -18.22675 -17.02182 -16.67683 -16.38964 -16.18985 -15.83890 -15.71576 -15.51369 -15.09709 -15.03193 -14.54919 -14.29897 -13.76793 -13.48364 -13.43221 -13.12416 -12.97362 -12.56335 -12.54109 -12.46518 -12.31011 -12.26373 -12.14436 -12.09510 -11.21610 -11.17994 -10.89803 -10.81770 -10.39438 -9.80229 -9.02924 -8.50026 -6.18968 -0.19503 0.20592 0.44993 0.59246 1.02713 1.09505 1.33796 1.42456 1.51743 1.60907 2.06587 2.15768 2.31503 2.79011 2.90234 3.16491 3.46526 3.65435 3.73781 3.94714 4.01758 4.12651 4.16962 4.28616 4.47100 4.52806 4.62852 4.75452 4.97778 5.01817 5.09945 5.16222 5.27038 5.52487 5.53852 5.67999 5.69239 5.91729 5.99790 6.18080 6.87139 6.94239 7.04665 7.74439 8.73207 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.002908 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.376309 B = 9625.968587 C =10397.032523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.248 1.248 7 C -0.415 4.415 8 H 0.105 0.895 9 O -0.232 6.232 10 C 0.123 3.877 11 C -0.251 4.251 12 C -0.042 4.042 13 C -0.192 4.192 14 C 0.183 3.817 15 N -0.360 5.360 16 C 0.275 3.725 17 N -0.546 5.546 18 C 0.271 3.729 19 C 0.247 3.753 20 N -0.278 5.278 21 N -0.050 5.050 22 N -0.191 5.191 23 H 0.499 0.501 24 N -0.258 5.258 25 N -0.287 5.287 26 C -0.034 4.034 27 C -0.215 4.215 28 H 0.273 0.727 29 H 0.121 0.879 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.114 0.886 33 H 0.284 0.716 34 H 0.138 0.862 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.127 -18.699 -3.777 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.172 1.172 7 C -0.491 4.491 8 H 0.122 0.878 9 O -0.139 6.139 10 C 0.072 3.928 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.194 4.194 14 C 0.065 3.935 15 N -0.151 5.151 16 C -0.020 4.020 17 N -0.274 5.274 18 C -0.012 4.012 19 C -0.036 4.036 20 N -0.152 5.152 21 N -0.045 5.045 22 N -0.044 5.044 23 H 0.359 0.641 24 N -0.113 5.113 25 N -0.120 5.120 26 C -0.053 4.053 27 C -0.235 4.235 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.173 0.827 31 H 0.182 0.818 32 H 0.132 0.868 33 H 0.299 0.701 34 H 0.156 0.844 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.699 -18.661 -4.258 24.133 hybrid contribution 0.037 1.070 -0.287 1.109 sum 14.736 -17.591 -4.545 23.393 Atomic orbital electron populations 1.70193 1.08166 1.28906 1.48604 1.26651 0.96851 1.02909 0.95721 0.84569 0.77963 0.74363 0.79209 1.19015 1.19560 1.17184 1.21865 0.92615 0.81303 1.53300 0.87791 1.83950 1.36267 1.12790 1.80852 1.20007 0.91931 0.87747 0.93085 1.21272 0.92818 1.00480 1.12428 1.21058 1.00363 0.90421 0.94146 1.19626 0.93408 0.94772 1.11588 1.21058 1.03846 0.91828 0.76781 1.51067 1.04275 1.46004 1.13794 1.27207 0.93650 0.92513 0.88634 1.70429 1.15059 1.25335 1.16603 1.19754 0.88741 1.01949 0.90724 1.21571 0.86845 1.02497 0.92663 1.76244 1.16893 1.16575 1.05506 1.78924 1.08214 1.12677 1.04723 1.47867 1.00742 1.39109 1.16648 0.64067 1.75010 1.20004 1.17451 0.98840 1.78388 1.15124 1.19674 0.98794 1.20849 0.93862 0.96348 0.94213 1.20434 0.99858 0.90929 1.12237 0.91779 0.86166 0.82657 0.81782 0.86768 0.70100 0.84392 0.87575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.08 13.67 21.61 0.30 -56.79 16 2 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 3 Si 1.02 42.65 29.55 68.60 2.03 44.68 16 4 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.41 -24.19 9.49 67.92 0.64 -23.54 16 8 H 0.10 5.49 5.20 -2.91 -0.02 5.48 16 9 O -0.23 -14.17 9.76 -22.77 -0.22 -14.40 16 10 C 0.12 6.16 6.65 22.58 0.15 6.31 16 11 C -0.25 -10.45 9.17 22.39 0.21 -10.24 16 12 C -0.04 -1.24 9.69 22.25 0.22 -1.02 16 13 C -0.19 -5.18 5.34 -19.83 -0.11 -5.29 16 14 C 0.18 2.77 6.67 85.63 0.57 3.34 16 15 N -0.36 -7.38 3.68 -355.84 -1.31 -8.69 16 16 C 0.27 4.38 12.61 180.37 2.27 6.65 16 17 N -0.55 -13.57 11.21 -193.05 -2.16 -15.73 16 18 C 0.27 8.11 8.08 137.51 1.11 9.22 16 19 C 0.25 7.29 8.31 137.39 1.14 8.43 16 20 N -0.28 -8.60 12.54 -52.16 -0.65 -9.25 16 21 N -0.05 -1.20 13.47 37.02 0.50 -0.70 16 22 N -0.19 -3.15 7.90 37.02 0.29 -2.86 16 23 H 0.50 2.37 8.96 -347.55 -3.12 -0.74 16 24 N -0.26 -6.06 12.40 -52.11 -0.65 -6.71 16 25 N -0.29 -8.71 12.59 -52.32 -0.66 -9.37 16 26 C -0.03 -1.14 9.69 22.25 0.22 -0.92 16 27 C -0.22 -9.40 9.99 22.39 0.22 -9.17 16 28 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 29 H 0.12 5.10 5.64 -2.91 -0.02 5.08 16 30 H 0.16 3.16 8.06 -2.92 -0.02 3.14 16 31 H 0.16 0.75 8.03 -2.38 -0.02 0.73 16 32 H 0.11 1.40 8.08 -2.39 -0.02 1.39 16 33 H 0.28 0.60 8.06 -2.91 -0.02 0.58 16 34 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -89.46 325.74 2.64 -86.82 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -1.93 Total: 10.11 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 7.11 Total: -17.12 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -4.35 Total: -110.09 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.22 Total: -14.40 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -89.46 2.64 -86.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737697172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 285.300 kcal (2) G-P(sol) polarization free energy of solvation -89.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds