Wall clock time and date at job start Fri Apr 10 2020 18:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34229 * 116.99671 * 2 1 4 4 O 1.20825 * 120.00351 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99914 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47522 * 180.02562 * 5 3 2 7 7 C 1.36940 * 119.99957 * 270.00574 * 6 5 3 8 8 H 1.08000 * 120.00019 * 190.58416 * 7 6 5 9 9 C 1.38810 * 119.99834 * 10.58127 * 7 6 5 10 10 N 1.31618 * 120.00234 * 25.88734 * 9 7 6 11 11 Si 1.86805 * 119.99758 * 205.88469 * 9 7 6 12 12 H 1.48494 * 109.46843 * 90.00575 * 11 9 7 13 13 H 1.48500 * 109.47028 * 210.00139 * 11 9 7 14 14 H 1.48499 * 109.47267 * 330.00339 * 11 9 7 15 15 C 1.46500 * 120.00036 * 89.99915 * 6 5 3 16 16 C 1.52997 * 109.46858 * 84.20260 * 15 6 5 17 17 H 1.08999 * 110.44242 * 305.69905 * 16 15 6 18 18 C 1.54162 * 110.49368 * 183.14007 * 16 15 6 19 19 C 1.51449 * 103.27565 * 241.33087 * 18 16 15 20 20 C 1.41559 * 125.97464 * 179.97438 * 19 18 16 21 21 O 1.21668 * 119.99619 * 179.97438 * 20 19 18 22 22 O 1.34925 * 120.00124 * 0.02562 * 20 19 18 23 23 C 1.42900 * 117.00097 * 179.97438 * 22 20 19 24 24 C 1.33869 * 108.05174 * 359.97438 * 19 18 16 25 25 C 1.50701 * 122.93059 * 179.97438 * 24 19 18 26 26 O 1.34045 * 114.18439 * 359.92221 * 24 19 18 27 27 H 1.09001 * 109.46911 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47382 * 300.00309 * 1 2 3 29 29 H 1.09004 * 109.47197 * 60.00509 * 1 2 3 30 30 H 1.09005 * 109.47403 * 300.00389 * 5 3 2 31 31 H 1.09002 * 109.46854 * 60.00140 * 5 3 2 32 32 H 0.96999 * 119.99752 * 179.97438 * 10 9 7 33 33 H 1.08997 * 109.46974 * 204.20228 * 15 6 5 34 34 H 1.09002 * 109.47299 * 324.20353 * 15 6 5 35 35 H 1.09002 * 110.66108 * 359.78091 * 18 16 15 36 36 H 1.09003 * 110.66162 * 122.71838 * 18 16 15 37 37 H 1.08999 * 109.47319 * 180.02562 * 23 22 20 38 38 H 1.09005 * 109.47281 * 300.00117 * 23 22 20 39 39 H 1.09002 * 109.47223 * 59.99914 * 23 22 20 40 40 H 1.08995 * 109.47027 * 89.99723 * 25 24 19 41 41 H 1.09000 * 109.47229 * 210.00151 * 25 24 19 42 42 H 1.08999 * 109.47025 * 330.00085 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.1762 3.3367 -1.1846 8 1 4.6432 4.3104 -1.1922 9 6 3.7730 2.7510 -2.3768 10 7 2.7951 1.8701 -2.3796 11 14 4.6184 3.2131 -3.9772 12 1 5.7702 2.3049 -4.2087 13 1 3.6551 3.0870 -5.1003 14 1 5.1020 4.6148 -3.8948 15 6 4.1889 3.3819 1.2701 16 6 5.6014 3.0984 1.7850 17 1 5.7749 2.0241 1.8488 18 6 5.8185 3.7627 3.1591 19 6 6.9555 4.7295 2.9023 20 6 7.5423 5.5954 3.8562 21 8 8.4553 6.3305 3.5300 22 8 7.0898 5.6047 5.1272 23 6 7.7286 6.5030 6.0367 24 6 7.3087 4.6221 1.6155 25 6 8.4146 5.4391 0.9986 26 8 6.5943 3.7239 0.9231 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 3.9557 0.7810 0.8908 31 1 3.9563 0.7807 -0.8892 32 1 2.5132 1.4611 -3.2128 33 1 4.0666 4.4540 1.1162 34 1 3.4590 3.0342 2.0011 35 1 4.9223 4.2977 3.4735 36 1 6.1027 3.0201 3.9047 37 1 7.2704 6.4099 7.0213 38 1 8.7886 6.2582 6.1050 39 1 7.6143 7.5258 5.6776 40 1 9.3594 4.9048 1.0971 41 1 8.1988 5.6043 -0.0570 42 1 8.4853 6.3994 1.5095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759853994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:35 Heat of formation + Delta-G solvation = -156.114082 kcal Electronic energy + Delta-G solvation = -27018.651373 eV Core-core repulsion = 22966.442981 eV Total energy + Delta-G solvation = -4052.208392 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.09243 -39.83883 -38.93600 -36.51248 -36.03429 -34.59796 -32.87884 -32.44156 -30.90927 -28.78353 -28.05250 -27.14330 -26.01053 -24.92376 -22.96684 -22.14207 -21.25373 -19.89310 -19.31495 -17.45572 -17.14680 -16.65118 -16.43666 -16.25622 -15.77757 -15.22171 -15.15914 -15.01429 -14.66347 -14.24430 -13.72541 -13.56768 -13.33002 -13.17447 -12.99983 -12.67978 -12.41503 -12.33948 -12.20369 -12.06134 -11.68673 -11.56982 -11.37043 -11.15624 -11.02003 -10.87376 -10.69998 -10.68553 -10.50921 -10.20437 -10.13264 -9.92891 -9.61698 -9.16339 -8.57511 -8.20008 -7.16317 -5.95951 -3.23177 1.29531 2.98857 3.16307 3.36445 3.41099 3.44569 3.45745 3.83936 4.01814 4.43193 4.65940 4.89294 5.07314 5.10234 5.14318 5.17190 5.29479 5.35296 5.39339 5.52892 5.58472 5.65604 5.73592 5.79121 5.84615 5.96193 5.99224 6.08283 6.10937 6.20813 6.24172 6.31396 6.51231 6.59235 6.67305 6.96436 7.27404 7.67474 7.77947 7.99488 8.09723 8.98131 9.37272 9.66368 10.06049 11.15708 Molecular weight = 313.14amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.004049 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.957314 B = 6914.195565 C = 8445.004476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.384 6.384 3 C 0.466 3.534 4 O -0.505 6.505 5 C 0.188 3.812 6 N -0.563 5.563 7 C -0.246 4.246 8 H 0.083 0.917 9 C 0.001 3.999 10 N -0.902 5.902 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.294 1.294 14 H -0.279 1.279 15 C 0.142 3.858 16 C 0.054 3.946 17 H 0.101 0.899 18 C -0.086 4.086 19 C -0.360 4.360 20 C 0.544 3.456 21 O -0.535 6.535 22 O -0.354 6.354 23 C 0.038 3.962 24 C 0.220 3.780 25 C -0.120 4.120 26 O -0.257 6.257 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.111 0.889 32 H 0.257 0.743 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.515 0.924 12.353 13.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.301 6.301 3 C 0.306 3.694 4 O -0.390 6.390 5 C 0.059 3.941 6 N -0.281 5.281 7 C -0.374 4.374 8 H 0.100 0.900 9 C -0.196 4.196 10 N -0.547 5.547 11 Si 0.738 3.262 12 H -0.213 1.213 13 H -0.221 1.221 14 H -0.205 1.205 15 C 0.014 3.986 16 C -0.003 4.003 17 H 0.118 0.882 18 C -0.124 4.124 19 C -0.363 4.363 20 C 0.395 3.605 21 O -0.429 6.429 22 O -0.271 6.271 23 C -0.057 4.057 24 C 0.166 3.834 25 C -0.176 4.176 26 O -0.165 6.165 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.432 1.300 11.864 13.558 hybrid contribution -0.125 0.344 -0.723 0.810 sum 6.307 1.644 11.141 12.908 Atomic orbital electron populations 1.22841 0.79867 1.01232 1.01233 1.86537 1.20943 1.36804 1.85834 1.25424 0.93399 0.80231 0.70336 1.90464 1.66600 1.36453 1.45483 1.20380 0.85746 0.86568 1.01419 1.44054 1.75006 1.07368 1.01638 1.19264 1.32606 1.02935 0.82594 0.89970 1.24739 0.96980 0.99838 0.98087 1.69821 1.25256 1.33026 1.26571 0.86185 0.79074 0.78167 0.82812 1.21325 1.22079 1.20475 1.21141 0.90325 0.98087 0.89072 1.24886 0.91007 0.97612 0.86795 0.88163 1.21481 0.96927 0.96716 0.97234 1.19372 1.10708 1.12067 0.94170 1.18561 0.80293 0.80587 0.81020 1.90786 1.30095 1.42381 1.79621 1.86209 1.60163 1.59902 1.20853 1.22787 0.98040 0.92977 0.91867 1.22293 0.87551 0.84149 0.89394 1.21124 0.94053 1.00114 1.02322 1.87043 1.44231 1.47914 1.37324 0.90210 0.93707 0.92848 0.92934 0.87164 0.93227 0.91578 0.91963 0.89746 0.90181 0.88556 0.92532 0.92467 0.88912 0.89790 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.16 10.57 -39.25 -0.41 -8.58 16 3 C 0.47 11.10 5.96 36.00 0.21 11.32 16 4 O -0.51 -13.67 15.74 -18.75 -0.30 -13.97 16 5 C 0.19 4.18 5.56 -5.20 -0.03 4.15 16 6 N -0.56 -13.00 2.02 -174.61 -0.35 -13.35 16 7 C -0.25 -6.39 9.65 -15.06 -0.15 -6.53 16 8 H 0.08 2.15 7.95 -52.49 -0.42 1.73 16 9 C 0.00 0.03 4.84 -17.43 -0.08 -0.05 16 10 N -0.90 -25.06 8.94 55.49 0.50 -24.57 16 11 Si 0.91 21.42 29.63 -169.99 -5.04 16.38 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.14 2.68 5.22 -4.04 -0.02 2.66 16 16 C 0.05 0.87 4.09 -26.12 -0.11 0.76 16 17 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 18 C -0.09 -1.18 6.44 -26.91 -0.17 -1.35 16 19 C -0.36 -5.39 6.06 -104.52 -0.63 -6.03 16 20 C 0.54 8.14 7.71 32.00 0.25 8.39 16 21 O -0.53 -8.58 13.79 -19.40 -0.27 -8.85 16 22 O -0.35 -4.71 10.26 -41.11 -0.42 -5.13 16 23 C 0.04 0.37 10.45 101.05 1.06 1.42 16 24 C 0.22 3.38 7.05 -35.84 -0.25 3.13 16 25 C -0.12 -1.56 9.63 36.01 0.35 -1.21 16 26 O -0.26 -4.52 10.75 -14.07 -0.15 -4.67 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 30 H 0.05 0.96 8.07 -51.93 -0.42 0.54 16 31 H 0.11 2.66 6.48 -51.93 -0.34 2.32 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.07 1.32 7.99 -51.93 -0.42 0.91 16 34 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 35 H 0.08 1.12 7.74 -51.93 -0.40 0.72 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 39 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.11 1.48 5.89 -51.93 -0.31 1.17 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -32.66 358.18 -5.64 -38.30 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.08 Total: 0.57 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 1.48 Total: 18.47 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.14 Total: -37.92 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -1.55 Total: -41.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.04 Total: 16.38 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.66 -5.64 -38.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759853994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.817 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds