Wall clock time and date at job start Fri Apr 10 2020 18:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34229 * 116.99671 * 2 1 4 4 O 1.20825 * 120.00351 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99914 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47522 * 180.02562 * 5 3 2 7 7 C 1.36940 * 119.99957 * 270.00574 * 6 5 3 8 8 H 1.08000 * 120.00019 * 190.58416 * 7 6 5 9 9 C 1.38810 * 119.99834 * 10.58127 * 7 6 5 10 10 N 1.31618 * 120.00234 * 25.88734 * 9 7 6 11 11 Si 1.86805 * 119.99758 * 205.88469 * 9 7 6 12 12 H 1.48494 * 109.46843 * 90.00575 * 11 9 7 13 13 H 1.48500 * 109.47028 * 210.00139 * 11 9 7 14 14 H 1.48499 * 109.47267 * 330.00339 * 11 9 7 15 15 C 1.46500 * 120.00036 * 89.99915 * 6 5 3 16 16 C 1.52997 * 109.46858 * 84.20260 * 15 6 5 17 17 H 1.08999 * 110.44242 * 305.69905 * 16 15 6 18 18 C 1.54162 * 110.49368 * 183.14007 * 16 15 6 19 19 C 1.51449 * 103.27565 * 241.33087 * 18 16 15 20 20 C 1.41559 * 125.97464 * 179.97438 * 19 18 16 21 21 O 1.21668 * 119.99619 * 179.97438 * 20 19 18 22 22 O 1.34925 * 120.00124 * 0.02562 * 20 19 18 23 23 C 1.42900 * 117.00097 * 179.97438 * 22 20 19 24 24 C 1.33869 * 108.05174 * 359.97438 * 19 18 16 25 25 C 1.50701 * 122.93059 * 179.97438 * 24 19 18 26 26 O 1.34045 * 114.18439 * 359.92221 * 24 19 18 27 27 H 1.09001 * 109.46911 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47382 * 300.00309 * 1 2 3 29 29 H 1.09004 * 109.47197 * 60.00509 * 1 2 3 30 30 H 1.09005 * 109.47403 * 300.00389 * 5 3 2 31 31 H 1.09002 * 109.46854 * 60.00140 * 5 3 2 32 32 H 0.96999 * 119.99752 * 179.97438 * 10 9 7 33 33 H 1.08997 * 109.46974 * 204.20228 * 15 6 5 34 34 H 1.09002 * 109.47299 * 324.20353 * 15 6 5 35 35 H 1.09002 * 110.66108 * 359.78091 * 18 16 15 36 36 H 1.09003 * 110.66162 * 122.71838 * 18 16 15 37 37 H 1.08999 * 109.47319 * 180.02562 * 23 22 20 38 38 H 1.09005 * 109.47281 * 300.00117 * 23 22 20 39 39 H 1.09002 * 109.47223 * 59.99914 * 23 22 20 40 40 H 1.08995 * 109.47027 * 89.99723 * 25 24 19 41 41 H 1.09000 * 109.47229 * 210.00151 * 25 24 19 42 42 H 1.08999 * 109.47025 * 330.00085 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.1762 3.3367 -1.1846 8 1 4.6432 4.3104 -1.1922 9 6 3.7730 2.7510 -2.3768 10 7 2.7951 1.8701 -2.3796 11 14 4.6184 3.2131 -3.9772 12 1 5.7702 2.3049 -4.2087 13 1 3.6551 3.0870 -5.1003 14 1 5.1020 4.6148 -3.8948 15 6 4.1889 3.3819 1.2701 16 6 5.6014 3.0984 1.7850 17 1 5.7749 2.0241 1.8488 18 6 5.8185 3.7627 3.1591 19 6 6.9555 4.7295 2.9023 20 6 7.5423 5.5954 3.8562 21 8 8.4553 6.3305 3.5300 22 8 7.0898 5.6047 5.1272 23 6 7.7286 6.5030 6.0367 24 6 7.3087 4.6221 1.6155 25 6 8.4146 5.4391 0.9986 26 8 6.5943 3.7239 0.9231 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 3.9557 0.7810 0.8908 31 1 3.9563 0.7807 -0.8892 32 1 2.5132 1.4611 -3.2128 33 1 4.0666 4.4540 1.1162 34 1 3.4590 3.0342 2.0011 35 1 4.9223 4.2977 3.4735 36 1 6.1027 3.0201 3.9047 37 1 7.2704 6.4099 7.0213 38 1 8.7886 6.2582 6.1050 39 1 7.6143 7.5258 5.6776 40 1 9.3594 4.9048 1.0971 41 1 8.1988 5.6043 -0.0570 42 1 8.4853 6.3994 1.5095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759853994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:35 Heat of formation + Delta-G solvation = -175.206545 kcal Electronic energy + Delta-G solvation = -27019.479284 eV Core-core repulsion = 22966.442981 eV Total energy + Delta-G solvation = -4053.036303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.27834 -40.98763 -40.70222 -37.85359 -37.49151 -36.41762 -34.16088 -33.91793 -32.48453 -30.21033 -29.37158 -28.30597 -27.63573 -26.33289 -24.23359 -23.58242 -22.62017 -21.57814 -20.54820 -18.96819 -18.54521 -18.10486 -17.81099 -17.61106 -17.26329 -16.86911 -16.64935 -16.32694 -16.25896 -15.55182 -15.27082 -15.17067 -14.54257 -14.22293 -14.16199 -14.06870 -13.87451 -13.76092 -13.44697 -13.32207 -13.03341 -12.89637 -12.76119 -12.67801 -12.60654 -12.38126 -12.25729 -12.19363 -11.96632 -11.82759 -11.64232 -11.34727 -11.33359 -11.02763 -10.51400 -9.43822 -8.97906 -7.95810 -5.22480 0.13582 1.47965 1.50930 1.57986 1.94839 2.03053 2.04597 2.26487 2.36150 2.58136 3.21902 3.38036 3.67085 3.81349 3.97123 4.04407 4.34847 4.38642 4.39805 4.40860 4.41760 4.48539 4.52174 4.54897 4.61029 4.68947 4.71376 4.76420 4.83400 4.91911 5.01957 5.04950 5.12401 5.19883 5.22349 5.53095 5.66488 5.99193 6.06959 6.21315 6.89380 7.03188 7.53576 7.79342 8.13590 9.13380 Molecular weight = 313.14amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.004049 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.957314 B = 6914.195565 C = 8445.004476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.386 6.386 3 C 0.468 3.532 4 O -0.546 6.546 5 C 0.188 3.812 6 N -0.577 5.577 7 C -0.242 4.242 8 H 0.073 0.927 9 C -0.047 4.047 10 N -0.925 5.925 11 Si 0.961 3.039 12 H -0.282 1.282 13 H -0.305 1.305 14 H -0.276 1.276 15 C 0.142 3.858 16 C 0.061 3.939 17 H 0.116 0.884 18 C -0.077 4.077 19 C -0.362 4.362 20 C 0.542 3.458 21 O -0.550 6.550 22 O -0.358 6.358 23 C 0.030 3.970 24 C 0.206 3.794 25 C -0.116 4.116 26 O -0.283 6.283 27 H 0.125 0.875 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.248 0.752 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.285 0.405 14.096 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.303 6.303 3 C 0.310 3.690 4 O -0.434 6.434 5 C 0.059 3.941 6 N -0.295 5.295 7 C -0.372 4.372 8 H 0.091 0.909 9 C -0.241 4.241 10 N -0.573 5.573 11 Si 0.791 3.209 12 H -0.208 1.208 13 H -0.232 1.232 14 H -0.201 1.201 15 C 0.016 3.984 16 C 0.004 3.996 17 H 0.133 0.867 18 C -0.115 4.115 19 C -0.365 4.365 20 C 0.394 3.606 21 O -0.445 6.445 22 O -0.275 6.275 23 C -0.064 4.064 24 C 0.153 3.847 25 C -0.172 4.172 26 O -0.191 6.191 27 H 0.143 0.857 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.225 0.778 13.655 15.468 hybrid contribution -0.398 0.538 -1.130 1.313 sum 6.827 1.316 12.525 14.325 Atomic orbital electron populations 1.23133 0.77681 1.04034 1.00621 1.86497 1.23072 1.35450 1.85250 1.25691 0.94034 0.80181 0.69074 1.90438 1.67597 1.37835 1.47531 1.20427 0.84981 0.86358 1.02373 1.44184 1.75302 1.07903 1.02137 1.19384 1.31268 1.02527 0.84022 0.90877 1.25316 0.97743 1.00670 1.00415 1.69960 1.26544 1.34467 1.26288 0.85342 0.77914 0.77989 0.79640 1.20824 1.23204 1.20141 1.21264 0.92669 0.96673 0.87777 1.24691 0.88804 0.98607 0.87452 0.86672 1.21470 0.96740 0.96901 0.96349 1.19552 1.10749 1.12068 0.94152 1.18584 0.80040 0.80286 0.81665 1.90777 1.30765 1.42948 1.80055 1.86191 1.60343 1.60588 1.20372 1.23108 0.98532 0.92296 0.92451 1.22621 0.88077 0.84186 0.89779 1.21149 0.94120 0.99683 1.02208 1.87019 1.44910 1.48786 1.38429 0.85700 0.92878 0.94945 0.88587 0.89294 0.94202 0.93408 0.90647 0.89242 0.87750 0.85302 0.92235 0.92581 0.87285 0.89527 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 10.56 113.37 1.20 2.53 16 2 O -0.39 -16.02 10.57 -51.41 -0.54 -16.57 16 3 C 0.47 22.16 5.96 71.24 0.42 22.58 16 4 O -0.55 -29.77 15.74 21.97 0.35 -29.43 16 5 C 0.19 8.21 5.56 85.63 0.48 8.68 16 6 N -0.58 -26.48 2.02 -706.35 -1.43 -27.91 16 7 C -0.24 -12.72 9.65 84.03 0.81 -11.91 16 8 H 0.07 3.89 7.95 -2.91 -0.02 3.87 16 9 C -0.05 -2.53 4.84 84.86 0.41 -2.11 16 10 N -0.93 -52.34 8.94 21.65 0.19 -52.15 16 11 Si 0.96 44.70 29.63 68.60 2.03 46.73 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 C 0.14 5.28 5.22 86.38 0.45 5.73 16 16 C 0.06 1.85 4.09 30.99 0.13 1.97 16 17 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 18 C -0.08 -1.93 6.44 30.48 0.20 -1.74 16 19 C -0.36 -10.26 6.06 -19.80 -0.12 -10.38 16 20 C 0.54 15.35 7.71 68.64 0.53 15.88 16 21 O -0.55 -16.98 13.79 19.29 0.27 -16.71 16 22 O -0.36 -8.73 10.26 -58.41 -0.60 -9.33 16 23 C 0.03 0.51 10.45 113.37 1.18 1.69 16 24 C 0.21 6.13 7.05 24.69 0.17 6.30 16 25 C -0.12 -2.89 9.63 71.24 0.69 -2.21 16 26 O -0.28 -9.68 10.75 -73.26 -0.79 -10.47 16 27 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 28 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 29 H 0.03 1.22 8.13 -2.38 -0.02 1.20 16 30 H 0.10 3.28 8.07 -2.38 -0.02 3.26 16 31 H 0.09 4.30 6.48 -2.39 -0.02 4.29 16 32 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 33 H 0.05 1.92 7.99 -2.39 -0.02 1.90 16 34 H 0.08 2.57 8.11 -2.39 -0.02 2.55 16 35 H 0.09 2.18 7.74 -2.39 -0.02 2.16 16 36 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 0.99 8.13 -2.38 -0.02 0.97 16 39 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 40 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.11 2.77 5.89 -2.39 -0.01 2.76 16 Total: -1.00 -70.87 358.18 7.06 -63.82 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 1.03 Total: 15.00 kcal Atomic # 6 Polarization: 30.47 SS G_CDS: 6.55 Total: 37.01 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -1.23 Total: -80.06 kcal Atomic # 8 Polarization: -81.18 SS G_CDS: -1.32 Total: -82.50 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.87 7.06 -63.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759853994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.390 kcal (2) G-P(sol) polarization free energy of solvation -70.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds