Wall clock time and date at job start Fri Apr 10 2020 18:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 116.99838 * 2 1 4 4 O 1.20823 * 120.00144 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99894 * 179.97438 * 3 2 1 6 6 C 1.50701 * 115.54866 * 325.57730 * 5 3 2 7 7 O 1.20825 * 119.99864 * 214.41246 * 6 5 3 8 8 O 1.34225 * 119.99776 * 34.42221 * 6 5 3 9 9 C 1.45202 * 117.00067 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.47089 * 29.99208 * 9 8 6 11 11 C 1.53003 * 109.46935 * 269.99967 * 9 8 6 12 12 C 1.50690 * 109.47501 * 149.99910 * 9 8 6 13 13 O 1.21286 * 120.00182 * 14.97109 * 12 9 8 14 14 N 1.34779 * 120.00348 * 194.97572 * 12 9 8 15 15 C 1.46497 * 119.99632 * 4.87426 * 14 12 9 16 16 C 1.46503 * 120.00281 * 184.87104 * 14 12 9 17 17 C 1.50699 * 109.46652 * 90.00375 * 16 14 12 18 18 H 1.07996 * 120.00260 * 359.97438 * 17 16 14 19 19 C 1.37878 * 119.99767 * 180.02562 * 17 16 14 20 20 N 1.31513 * 119.99883 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99899 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46840 * 90.00023 * 21 19 17 23 23 H 1.48507 * 109.47004 * 209.99580 * 21 19 17 24 24 H 1.48490 * 109.47467 * 329.99933 * 21 19 17 25 25 C 1.53001 * 117.49809 * 111.25042 * 5 3 2 26 26 C 1.53003 * 117.49760 * 179.91036 * 5 3 2 27 27 H 1.09003 * 109.47268 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47358 * 300.00357 * 1 2 3 29 29 H 1.09001 * 109.47202 * 60.00725 * 1 2 3 30 30 H 1.08999 * 109.47368 * 176.94043 * 11 9 8 31 31 H 1.09001 * 109.47282 * 296.94196 * 11 9 8 32 32 H 1.08996 * 109.47172 * 56.94239 * 11 9 8 33 33 H 1.09002 * 109.47517 * 84.69932 * 15 14 12 34 34 H 1.09004 * 109.47121 * 204.69304 * 15 14 12 35 35 H 1.08995 * 109.47253 * 324.69688 * 15 14 12 36 36 H 1.08997 * 109.46825 * 209.99778 * 16 14 12 37 37 H 1.09005 * 109.47028 * 330.00474 * 16 14 12 38 38 H 0.97008 * 120.00064 * 180.02562 * 20 19 17 39 39 H 1.08999 * 117.49723 * 214.99737 * 25 5 3 40 40 H 1.08999 * 117.50088 * 0.02562 * 25 5 3 41 41 H 1.09000 * 117.50046 * 359.97438 * 26 5 3 42 42 H 1.09004 * 117.49517 * 144.97349 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.2738 0.1890 0.7697 7 8 5.3014 0.4351 1.3555 8 8 3.7623 -1.0515 0.8037 9 6 4.4972 -2.0470 1.5634 10 1 5.0226 -1.5614 2.3858 11 6 5.5101 -2.7402 0.6499 12 6 3.5364 -3.0686 2.1146 13 8 2.4060 -3.1345 1.6799 14 7 3.9330 -3.9092 3.0906 15 6 5.2614 -3.7607 3.6901 16 6 3.0356 -4.9713 3.5521 17 6 3.2671 -6.2153 2.7336 18 1 4.0082 -6.2147 1.9480 19 6 2.5321 -7.3540 2.9870 20 7 1.6294 -7.3545 3.9434 21 14 2.8185 -8.8957 1.9720 22 1 3.8652 -9.7270 2.6191 23 1 1.5553 -9.6714 1.8828 24 1 3.2628 -8.5146 0.6073 25 6 4.2465 1.8028 -1.2641 26 6 4.2007 2.6672 -0.0016 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8901 30 1 6.0990 -3.4489 1.2320 31 1 4.9815 -3.2710 -0.1419 32 1 6.1713 -1.9945 0.2086 33 1 5.2201 -3.0163 4.4853 34 1 5.5823 -4.7168 4.1038 35 1 5.9703 -3.4386 2.9273 36 1 3.2354 -5.1849 4.6021 37 1 2.0009 -4.6482 3.4374 38 1 1.1125 -8.1558 4.1220 39 1 5.2058 1.3648 -1.5399 40 1 3.6055 2.0935 -2.0964 41 1 3.5296 3.5261 -0.0038 42 1 5.1296 2.7978 0.5536 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766828343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:40 Heat of formation + Delta-G solvation = -162.157143 kcal Electronic energy + Delta-G solvation = -27094.554585 eV Core-core repulsion = 23042.084146 eV Total energy + Delta-G solvation = -4052.470439 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34031 -40.30330 -39.02966 -37.57639 -36.44181 -35.83905 -34.87411 -32.84941 -31.63490 -28.39556 -27.78914 -26.24709 -25.94361 -24.33508 -23.09727 -22.99510 -21.90519 -20.04460 -18.91307 -18.79082 -17.36518 -16.74924 -16.64273 -16.54947 -16.31817 -15.90099 -15.65899 -15.22080 -14.71286 -14.47965 -14.35761 -13.67623 -13.53717 -13.33512 -13.05149 -12.84815 -12.39710 -12.17227 -12.09739 -12.08832 -12.04166 -11.73742 -11.65940 -11.40236 -11.24821 -11.17189 -10.94770 -10.87680 -10.79161 -10.73634 -10.58592 -10.46796 -10.18880 -9.67194 -8.90177 -8.47104 -7.72035 -6.07903 -4.13223 1.57039 2.01608 2.29961 2.49865 3.21428 3.24698 3.27970 3.34994 3.39587 3.80870 4.01629 4.19030 4.40308 4.46360 4.52409 4.82859 4.99512 5.07367 5.08548 5.11087 5.16371 5.22883 5.26726 5.37922 5.46096 5.58284 5.64433 5.67009 5.71665 5.85570 6.06083 6.23437 6.25343 6.32241 6.97655 7.38739 7.44977 7.52059 7.61144 7.88182 8.18056 8.28954 8.83251 8.98567 9.51993 11.00145 Molecular weight = 313.14amu Principal moments of inertia in cm(-1) A = 0.018836 B = 0.003597 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.167703 B = 7782.758501 C = 8527.356468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.320 6.320 3 C 0.502 3.498 4 O -0.505 6.505 5 C -0.158 4.158 6 C 0.503 3.497 7 O -0.501 6.501 8 O -0.301 6.301 9 C 0.068 3.932 10 H 0.102 0.898 11 C -0.164 4.164 12 C 0.510 3.490 13 O -0.514 6.514 14 N -0.597 5.597 15 C 0.073 3.927 16 C 0.246 3.754 17 C -0.529 4.529 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.116 4.116 26 C -0.107 4.107 27 H 0.110 0.890 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.035 0.965 37 H 0.046 0.954 38 H 0.264 0.736 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 17.340 -8.010 20.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.234 6.234 3 C 0.344 3.656 4 O -0.394 6.394 5 C -0.161 4.161 6 C 0.345 3.655 7 O -0.390 6.390 8 O -0.215 6.215 9 C 0.010 3.990 10 H 0.120 0.880 11 C -0.221 4.221 12 C 0.294 3.706 13 O -0.389 6.389 14 N -0.331 5.331 15 C -0.071 4.071 16 C 0.128 3.872 17 C -0.568 4.568 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.153 4.153 26 C -0.144 4.144 27 H 0.128 0.872 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.297 17.456 -7.944 20.186 hybrid contribution 0.048 -1.074 -0.280 1.111 sum 6.345 16.381 -8.224 19.397 Atomic orbital electron populations 1.23374 0.75530 1.04650 1.01970 1.86725 1.23631 1.30712 1.82345 1.21780 0.88856 0.82308 0.72612 1.90663 1.66049 1.36577 1.46103 1.20552 0.89752 0.97590 1.08174 1.21794 0.82718 0.82864 0.78148 1.90658 1.23657 1.82502 1.42166 1.86722 1.51527 1.17727 1.65526 1.22754 0.92838 0.88137 0.95298 0.88026 1.22168 0.98001 1.01305 1.00610 1.19698 0.87953 0.82091 0.80865 1.90703 1.19665 1.70215 1.58295 1.48070 1.16827 1.32094 1.36101 1.21853 0.84727 1.02725 0.97815 1.19356 0.89846 0.83203 0.94813 1.21430 1.21298 0.95912 1.18157 0.92343 1.24936 0.94811 0.98940 0.95355 1.69934 1.23374 1.29121 1.30818 0.86488 0.77622 0.82670 0.80595 1.20622 1.21061 1.19854 1.23281 1.01883 0.99783 0.90383 1.23361 1.02563 0.89530 0.98925 0.87195 0.91893 0.92058 0.89427 0.90524 0.91368 0.93491 0.90078 0.92220 0.94689 0.93592 0.92654 0.86199 0.86285 0.85675 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.56 101.05 1.07 1.54 16 2 O -0.32 -4.94 9.11 -45.54 -0.41 -5.36 16 3 C 0.50 7.05 7.49 36.01 0.27 7.32 16 4 O -0.50 -7.47 16.01 -18.75 -0.30 -7.77 16 5 C -0.16 -1.89 2.58 -156.81 -0.40 -2.30 16 6 C 0.50 7.32 7.46 36.01 0.27 7.59 16 7 O -0.50 -7.54 15.48 -18.75 -0.29 -7.83 16 8 O -0.30 -5.13 8.01 -48.85 -0.39 -5.52 16 9 C 0.07 1.14 2.14 -27.89 -0.06 1.08 16 10 H 0.10 1.55 6.39 -51.93 -0.33 1.22 16 11 C -0.16 -2.28 9.29 37.16 0.35 -1.93 16 12 C 0.51 10.88 6.97 -10.99 -0.08 10.80 16 13 O -0.51 -13.12 16.12 -13.62 -0.22 -13.34 16 14 N -0.60 -12.60 2.86 -182.96 -0.52 -13.13 16 15 C 0.07 1.14 9.85 59.85 0.59 1.73 16 16 C 0.25 6.37 5.17 -5.19 -0.03 6.34 16 17 C -0.53 -14.70 9.39 -34.44 -0.32 -15.03 16 18 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 21 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 C -0.12 -0.91 9.94 -26.69 -0.27 -1.18 16 26 C -0.11 -0.92 9.56 -26.69 -0.26 -1.17 16 27 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 29 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 30 H 0.09 1.12 6.02 -51.93 -0.31 0.81 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 35 H 0.06 0.77 4.70 -51.93 -0.24 0.53 16 36 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 37 H 0.05 1.34 7.36 -51.93 -0.38 0.96 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.13 0.98 7.67 -51.93 -0.40 0.58 16 42 H 0.13 0.99 7.67 -51.93 -0.40 0.59 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -35.27 364.73 -5.73 -40.99 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.83 Total: -0.95 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 1.03 Total: 16.43 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.21 Total: -38.61 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -1.62 Total: -39.83 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.27 -5.73 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766828343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.165 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds