Wall clock time and date at job start Fri Apr 10 2020 18:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 116.99838 * 2 1 4 4 O 1.20823 * 120.00144 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99894 * 179.97438 * 3 2 1 6 6 C 1.50701 * 115.54866 * 325.57730 * 5 3 2 7 7 O 1.20825 * 119.99864 * 214.41246 * 6 5 3 8 8 O 1.34225 * 119.99776 * 34.42221 * 6 5 3 9 9 C 1.45202 * 117.00067 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.47089 * 29.99208 * 9 8 6 11 11 C 1.53003 * 109.46935 * 269.99967 * 9 8 6 12 12 C 1.50690 * 109.47501 * 149.99910 * 9 8 6 13 13 O 1.21286 * 120.00182 * 14.97109 * 12 9 8 14 14 N 1.34779 * 120.00348 * 194.97572 * 12 9 8 15 15 C 1.46497 * 119.99632 * 4.87426 * 14 12 9 16 16 C 1.46503 * 120.00281 * 184.87104 * 14 12 9 17 17 C 1.50699 * 109.46652 * 90.00375 * 16 14 12 18 18 H 1.07996 * 120.00260 * 359.97438 * 17 16 14 19 19 C 1.37878 * 119.99767 * 180.02562 * 17 16 14 20 20 N 1.31513 * 119.99883 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99899 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46840 * 90.00023 * 21 19 17 23 23 H 1.48507 * 109.47004 * 209.99580 * 21 19 17 24 24 H 1.48490 * 109.47467 * 329.99933 * 21 19 17 25 25 C 1.53001 * 117.49809 * 111.25042 * 5 3 2 26 26 C 1.53003 * 117.49760 * 179.91036 * 5 3 2 27 27 H 1.09003 * 109.47268 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47358 * 300.00357 * 1 2 3 29 29 H 1.09001 * 109.47202 * 60.00725 * 1 2 3 30 30 H 1.08999 * 109.47368 * 176.94043 * 11 9 8 31 31 H 1.09001 * 109.47282 * 296.94196 * 11 9 8 32 32 H 1.08996 * 109.47172 * 56.94239 * 11 9 8 33 33 H 1.09002 * 109.47517 * 84.69932 * 15 14 12 34 34 H 1.09004 * 109.47121 * 204.69304 * 15 14 12 35 35 H 1.08995 * 109.47253 * 324.69688 * 15 14 12 36 36 H 1.08997 * 109.46825 * 209.99778 * 16 14 12 37 37 H 1.09005 * 109.47028 * 330.00474 * 16 14 12 38 38 H 0.97008 * 120.00064 * 180.02562 * 20 19 17 39 39 H 1.08999 * 117.49723 * 214.99737 * 25 5 3 40 40 H 1.08999 * 117.50088 * 0.02562 * 25 5 3 41 41 H 1.09000 * 117.50046 * 359.97438 * 26 5 3 42 42 H 1.09004 * 117.49517 * 144.97349 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.2738 0.1890 0.7697 7 8 5.3014 0.4351 1.3555 8 8 3.7623 -1.0515 0.8037 9 6 4.4972 -2.0470 1.5634 10 1 5.0226 -1.5614 2.3858 11 6 5.5101 -2.7402 0.6499 12 6 3.5364 -3.0686 2.1146 13 8 2.4060 -3.1345 1.6799 14 7 3.9330 -3.9092 3.0906 15 6 5.2614 -3.7607 3.6901 16 6 3.0356 -4.9713 3.5521 17 6 3.2671 -6.2153 2.7336 18 1 4.0082 -6.2147 1.9480 19 6 2.5321 -7.3540 2.9870 20 7 1.6294 -7.3545 3.9434 21 14 2.8185 -8.8957 1.9720 22 1 3.8652 -9.7270 2.6191 23 1 1.5553 -9.6714 1.8828 24 1 3.2628 -8.5146 0.6073 25 6 4.2465 1.8028 -1.2641 26 6 4.2007 2.6672 -0.0016 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8901 30 1 6.0990 -3.4489 1.2320 31 1 4.9815 -3.2710 -0.1419 32 1 6.1713 -1.9945 0.2086 33 1 5.2201 -3.0163 4.4853 34 1 5.5823 -4.7168 4.1038 35 1 5.9703 -3.4386 2.9273 36 1 3.2354 -5.1849 4.6021 37 1 2.0009 -4.6482 3.4374 38 1 1.1125 -8.1558 4.1220 39 1 5.2058 1.3648 -1.5399 40 1 3.6055 2.0935 -2.0964 41 1 3.5296 3.5261 -0.0038 42 1 5.1296 2.7978 0.5536 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766828343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:39 Heat of formation + Delta-G solvation = -183.781677 kcal Electronic energy + Delta-G solvation = -27095.492295 eV Core-core repulsion = 23042.084146 eV Total energy + Delta-G solvation = -4053.408149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.41143 -41.49547 -40.54303 -38.62596 -37.61908 -36.84439 -36.64000 -34.85005 -33.05511 -29.72435 -29.33647 -27.60678 -27.07294 -25.90167 -24.51029 -23.68839 -23.26991 -21.11967 -20.40663 -19.94037 -18.68065 -18.54303 -18.01564 -17.79670 -17.57785 -17.12958 -16.98036 -16.61404 -16.19967 -16.11777 -15.37372 -14.93789 -14.80150 -14.41653 -14.35145 -14.23038 -13.93272 -13.63137 -13.54761 -13.32287 -13.13299 -13.09277 -12.84760 -12.67633 -12.60593 -12.54093 -12.46149 -12.19670 -12.01187 -11.93310 -11.85983 -11.78490 -11.70965 -11.54690 -10.63661 -10.59817 -9.50024 -8.22323 -6.37219 0.58172 0.93968 1.17219 1.38423 1.41395 1.51265 1.54142 1.63117 2.29064 2.42672 2.44095 3.07928 3.19989 3.31133 3.41629 3.51886 3.65759 3.74817 3.84101 4.16403 4.25212 4.26073 4.42576 4.52569 4.56894 4.58745 4.65017 4.66130 4.76971 4.86277 4.94340 4.99971 5.10884 5.16950 5.21716 5.25334 5.52898 5.79271 6.04053 6.38523 6.52185 6.62391 6.72022 7.22013 7.37379 8.85181 Molecular weight = 313.14amu Principal moments of inertia in cm(-1) A = 0.018836 B = 0.003597 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.167703 B = 7782.758501 C = 8527.356468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.346 6.346 3 C 0.500 3.500 4 O -0.519 6.519 5 C -0.189 4.189 6 C 0.504 3.496 7 O -0.507 6.507 8 O -0.323 6.323 9 C 0.077 3.923 10 H 0.121 0.879 11 C -0.157 4.157 12 C 0.500 3.500 13 O -0.570 6.570 14 N -0.601 5.601 15 C 0.066 3.934 16 C 0.260 3.740 17 C -0.543 4.543 18 H 0.059 0.941 19 C 0.008 3.992 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.263 1.263 23 H -0.283 1.283 24 H -0.271 1.271 25 C -0.091 4.091 26 C -0.092 4.092 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.028 0.972 37 H -0.001 1.001 38 H 0.267 0.733 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.604 18.140 -9.335 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.261 6.261 3 C 0.344 3.656 4 O -0.409 6.409 5 C -0.191 4.191 6 C 0.347 3.653 7 O -0.396 6.396 8 O -0.238 6.238 9 C 0.019 3.981 10 H 0.138 0.862 11 C -0.214 4.214 12 C 0.287 3.713 13 O -0.449 6.449 14 N -0.334 5.334 15 C -0.076 4.076 16 C 0.139 3.861 17 C -0.582 4.582 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.793 3.207 22 H -0.188 1.188 23 H -0.208 1.208 24 H -0.195 1.195 25 C -0.128 4.128 26 C -0.128 4.128 27 H 0.126 0.874 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.046 0.954 37 H 0.017 0.983 38 H 0.076 0.924 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.957 18.279 -9.253 22.360 hybrid contribution -0.788 -1.244 0.169 1.482 sum 8.169 17.035 -9.083 20.963 Atomic orbital electron populations 1.23496 0.74668 1.04915 1.02926 1.86714 1.24901 1.31951 1.82556 1.22177 0.89806 0.81667 0.71957 1.90641 1.66606 1.36680 1.46979 1.20750 0.88229 0.98552 1.11596 1.22196 0.82758 0.82306 0.78062 1.90640 1.24043 1.82420 1.42509 1.86736 1.52464 1.18879 1.65721 1.22632 0.91485 0.87379 0.96568 0.86179 1.22177 0.97409 1.01977 0.99834 1.20593 0.88080 0.82544 0.80117 1.90667 1.22263 1.71951 1.60008 1.48055 1.18205 1.30884 1.36264 1.22173 0.82378 1.03673 0.99365 1.18843 0.88654 0.84180 0.94413 1.21703 1.21411 0.96759 1.18316 0.92313 1.25865 0.94372 1.02408 0.96438 1.70059 1.24250 1.30201 1.32333 0.85396 0.77884 0.78513 0.78907 1.18800 1.20848 1.19525 1.23590 1.02148 0.97401 0.89622 1.23544 1.02356 0.87797 0.99100 0.87375 0.91927 0.90102 0.88020 0.92025 0.88595 0.91112 0.90128 0.88900 0.95362 0.98256 0.92397 0.84290 0.84615 0.84974 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 10.56 113.37 1.20 2.04 16 2 O -0.35 -10.97 9.11 -45.36 -0.41 -11.38 16 3 C 0.50 13.87 7.49 71.24 0.53 14.41 16 4 O -0.52 -15.08 16.01 21.97 0.35 -14.72 16 5 C -0.19 -4.20 2.58 -53.67 -0.14 -4.34 16 6 C 0.50 13.90 7.46 71.24 0.53 14.44 16 7 O -0.51 -14.02 15.48 21.97 0.34 -13.68 16 8 O -0.32 -10.88 8.01 -42.19 -0.34 -11.22 16 9 C 0.08 2.50 2.14 29.85 0.06 2.57 16 10 H 0.12 3.40 6.39 -2.39 -0.02 3.38 16 11 C -0.16 -4.01 9.29 71.98 0.67 -3.34 16 12 C 0.50 21.73 6.97 87.65 0.61 22.34 16 13 O -0.57 -30.62 16.12 15.28 0.25 -30.37 16 14 N -0.60 -25.66 2.86 -851.13 -2.43 -28.09 16 15 C 0.07 1.94 9.85 127.77 1.26 3.20 16 16 C 0.26 13.98 5.17 85.63 0.44 14.42 16 17 C -0.54 -30.77 9.39 25.60 0.24 -30.53 16 18 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 19 C 0.01 0.47 5.46 84.66 0.46 0.93 16 20 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 21 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 C -0.09 -1.14 9.94 30.62 0.30 -0.83 16 26 C -0.09 -1.31 9.56 30.62 0.29 -1.02 16 27 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 29 H 0.08 1.69 8.13 -2.39 -0.02 1.67 16 30 H 0.10 2.28 6.02 -2.39 -0.01 2.26 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 2.40 8.03 -2.38 -0.02 2.38 16 35 H 0.09 2.12 4.70 -2.39 -0.01 2.11 16 36 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 37 H 0.00 -0.04 7.36 -2.38 -0.02 -0.06 16 38 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 39 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.13 1.73 7.67 -2.39 -0.02 1.71 16 42 H 0.14 1.70 7.67 -2.39 -0.02 1.68 16 Total: -1.00 -79.69 364.73 7.57 -72.12 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.04 Total: 12.37 kcal Atomic # 6 Polarization: 27.81 SS G_CDS: 6.47 Total: 34.28 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -2.15 Total: -83.56 kcal Atomic # 8 Polarization: -81.56 SS G_CDS: 0.19 Total: -81.37 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -79.69 7.57 -72.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766828343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.666 kcal (2) G-P(sol) polarization free energy of solvation -79.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds