Wall clock time and date at job start Fri Apr 10 2020 18:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47606 * 2 1 4 4 C 1.46500 * 120.00019 * 269.99851 * 3 2 1 5 5 C 1.50696 * 109.47143 * 269.99840 * 4 3 2 6 6 H 1.07999 * 119.99900 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00020 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99944 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99944 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47100 * 89.99950 * 9 7 5 11 11 H 1.48500 * 109.47289 * 209.99535 * 9 7 5 12 12 H 1.48502 * 109.47160 * 329.99958 * 9 7 5 13 13 C 1.34779 * 120.00138 * 89.99794 * 3 2 1 14 14 O 1.21280 * 119.99999 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99790 * 359.97438 * 13 3 2 16 16 O 1.45201 * 109.47155 * 179.97438 * 15 13 3 17 17 C 1.34221 * 117.00041 * 180.02562 * 16 15 13 18 18 O 1.20824 * 120.00413 * 0.02562 * 17 16 15 19 19 C 1.50704 * 119.99880 * 179.97438 * 17 16 15 20 20 C 1.50696 * 115.55143 * 325.58990 * 19 17 16 21 21 O 1.20833 * 119.99595 * 214.32929 * 20 19 17 22 22 O 1.34224 * 120.00302 * 34.32401 * 20 19 17 23 23 C 1.45206 * 117.00077 * 180.02562 * 22 20 19 24 24 C 1.53003 * 117.51300 * 111.28607 * 19 17 16 25 25 C 1.53006 * 60.00072 * 107.48166 * 24 19 17 26 26 H 1.08996 * 109.47474 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46915 * 300.00499 * 1 2 3 28 28 H 1.09004 * 109.46736 * 60.00305 * 1 2 3 29 29 H 1.08999 * 109.47155 * 239.99159 * 2 1 3 30 30 H 1.09007 * 109.47000 * 120.00135 * 2 1 3 31 31 H 1.09000 * 109.47174 * 30.00209 * 4 3 2 32 32 H 1.09004 * 109.47117 * 149.99804 * 4 3 2 33 33 H 0.97003 * 119.99839 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.46810 * 60.00278 * 15 13 3 35 35 H 1.08999 * 109.47085 * 300.00018 * 15 13 3 36 36 H 1.09001 * 109.46626 * 60.00180 * 23 22 20 37 37 H 1.09001 * 109.47153 * 179.97438 * 23 22 20 38 38 H 1.09000 * 109.47070 * 300.00162 * 23 22 20 39 39 H 1.09005 * 117.49862 * 214.96638 * 24 19 17 40 40 H 1.08998 * 117.50254 * 359.97438 * 24 19 17 41 41 H 1.08993 * 117.49745 * 252.51069 * 25 24 19 42 42 H 1.08996 * 117.51467 * 107.47411 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0717 -1.2687 5 6 3.6859 1.8348 -1.7037 6 1 4.3429 1.2306 -1.0957 7 6 4.1493 2.3894 -2.8779 8 7 5.3916 2.1830 -3.2573 9 14 3.0131 3.4349 -3.9292 10 1 3.1167 4.8552 -3.5081 11 1 3.4061 3.3118 -5.3559 12 1 1.6134 2.9690 -3.7592 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1600 1.1672 15 6 1.9913 1.3063 2.4723 16 8 2.3065 2.1956 3.5760 17 6 2.1355 1.7119 4.8163 18 8 1.7361 0.5826 4.9747 19 6 2.4428 2.5770 6.0114 20 6 3.5965 3.5318 5.8433 21 8 4.3086 3.7906 6.7846 22 8 3.8332 4.0946 4.6480 23 6 4.9618 5.0039 4.5593 24 6 1.2648 3.0370 6.8726 25 6 2.2255 1.9686 7.3984 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.5818 1.6877 -2.0284 32 1 2.0958 3.1410 -1.1384 33 1 5.7175 2.5729 -4.0836 34 1 2.6211 0.4186 2.5303 35 1 0.9431 1.0126 2.5298 36 1 5.8774 4.4729 4.8195 37 1 5.0408 5.3869 3.5419 38 1 4.8145 5.8342 5.2500 39 1 1.3243 4.0303 7.3176 40 1 0.2672 2.7144 6.5746 41 1 1.8601 0.9429 7.4465 42 1 2.9174 2.2588 8.1891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766833253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:43 Heat of formation + Delta-G solvation = -184.578384 kcal Electronic energy + Delta-G solvation = -26794.461658 eV Core-core repulsion = 22741.018962 eV Total energy + Delta-G solvation = -4053.442697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.36403 -41.41323 -40.60575 -38.62116 -37.62056 -37.02777 -36.81035 -34.87575 -32.06278 -30.88141 -29.47162 -28.74151 -26.62461 -24.53203 -24.20808 -23.68969 -23.49739 -21.15981 -20.24670 -19.85816 -19.12202 -18.56579 -18.01152 -17.90870 -17.78467 -17.34983 -17.06544 -16.61275 -16.29958 -15.79241 -15.41774 -15.03756 -14.76230 -14.54178 -14.47618 -14.32423 -14.12343 -13.78281 -13.73266 -13.38380 -13.17134 -13.08608 -12.65081 -12.57416 -12.53073 -12.41707 -12.14737 -12.01251 -11.98541 -11.87249 -11.80194 -11.78479 -11.73875 -11.57202 -10.82849 -10.75425 -9.50524 -8.33593 -6.39164 0.58429 0.91343 1.14578 1.34255 1.38137 1.46321 1.53536 1.60860 2.27323 2.31711 2.44215 3.00810 3.19506 3.33004 3.41106 3.53089 3.65250 3.88441 3.95663 4.14621 4.16429 4.26063 4.37850 4.43918 4.52396 4.59704 4.65644 4.75682 4.77965 4.87255 4.97077 4.99716 5.00515 5.10066 5.24028 5.37623 5.45606 5.58083 6.21891 6.37180 6.51300 6.58043 6.62589 7.17454 7.30516 8.83346 Molecular weight = 313.14amu Principal moments of inertia in cm(-1) A = 0.016307 B = 0.003752 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.657552 B = 7461.452743 C = 8661.692679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.593 5.593 4 C 0.228 3.772 5 C -0.538 4.538 6 H 0.028 0.972 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.276 1.276 12 H -0.235 1.235 13 C 0.501 3.499 14 O -0.567 6.567 15 C 0.058 3.942 16 O -0.329 6.329 17 C 0.506 3.494 18 O -0.508 6.508 19 C -0.189 4.189 20 C 0.501 3.499 21 O -0.519 6.519 22 O -0.347 6.347 23 C 0.032 3.968 24 C -0.092 4.092 25 C -0.090 4.090 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.021 0.979 33 H 0.268 0.732 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.073 -1.636 19.261 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.030 4.030 3 N -0.326 5.326 4 C 0.106 3.894 5 C -0.577 4.577 6 H 0.047 0.953 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.201 1.201 12 H -0.158 1.158 13 C 0.288 3.712 14 O -0.445 6.445 15 C -0.018 4.018 16 O -0.243 6.243 17 C 0.349 3.651 18 O -0.397 6.397 19 C -0.191 4.191 20 C 0.344 3.656 21 O -0.409 6.409 22 O -0.262 6.262 23 C -0.061 4.061 24 C -0.129 4.129 25 C -0.127 4.127 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.148 0.852 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.153 0.847 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.624 -1.254 19.352 23.139 hybrid contribution 0.813 0.509 -1.139 1.489 sum -11.811 -0.746 18.213 21.720 Atomic orbital electron populations 1.22179 0.93572 1.03920 1.02328 1.21888 0.95974 0.80807 1.04318 1.47956 1.64069 1.15304 1.05241 1.19357 0.94964 0.93175 0.81930 1.21561 0.97080 1.32266 1.06772 0.95321 1.25846 0.96700 0.97136 0.98931 1.70055 1.17466 1.46561 1.24462 0.85723 0.80567 0.79012 0.77708 1.20171 1.20121 1.15830 1.20464 0.78242 0.86753 0.85721 1.90691 1.46339 1.19928 1.87589 1.22911 1.04997 0.91887 0.82047 1.86660 1.78287 1.44834 1.14526 1.22141 0.73848 0.85619 0.83491 1.90661 1.43425 1.19006 1.86567 1.20741 1.02159 1.03403 0.92793 1.22164 0.83723 0.78767 0.80907 1.90647 1.47678 1.61095 1.41443 1.86715 1.49545 1.56475 1.33471 1.23513 0.86031 0.91834 1.04745 1.23580 0.92919 1.02238 0.94157 1.23533 1.00588 1.01149 0.87416 0.88562 0.92108 0.92895 0.90136 0.88953 0.92689 0.96049 0.92267 0.87062 0.85155 0.91719 0.87370 0.90174 0.84654 0.84349 0.84588 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 10.24 71.98 0.74 -2.62 16 2 C 0.09 2.58 5.93 86.38 0.51 3.09 16 3 N -0.59 -23.47 2.46 -826.16 -2.03 -25.50 16 4 C 0.23 10.84 4.23 85.63 0.36 11.20 16 5 C -0.54 -31.38 9.94 25.60 0.25 -31.12 16 6 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 7 C 0.01 0.70 5.47 84.65 0.46 1.16 16 8 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 9 Si 0.95 43.81 27.47 68.60 1.88 45.69 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 13 C 0.50 20.48 7.75 87.66 0.68 21.16 16 14 O -0.57 -28.89 16.08 15.77 0.25 -28.63 16 15 C 0.06 1.76 4.50 71.24 0.32 2.08 16 16 O -0.33 -10.76 8.30 -42.07 -0.35 -11.11 16 17 C 0.51 13.65 7.49 71.24 0.53 14.18 16 18 O -0.51 -13.79 16.01 21.97 0.35 -13.44 16 19 C -0.19 -4.14 2.58 -53.67 -0.14 -4.28 16 20 C 0.50 13.73 7.49 71.23 0.53 14.26 16 21 O -0.52 -14.94 16.01 21.94 0.35 -14.59 16 22 O -0.35 -10.89 9.11 -45.33 -0.41 -11.30 16 23 C 0.03 0.81 10.56 113.37 1.20 2.01 16 24 C -0.09 -1.15 9.94 30.60 0.30 -0.85 16 25 C -0.09 -1.27 9.56 30.60 0.29 -0.98 16 26 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.16 7.22 -2.38 -0.02 1.14 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 30 H 0.09 2.12 6.44 -2.38 -0.02 2.10 16 31 H 0.06 2.38 7.13 -2.39 -0.02 2.36 16 32 H 0.02 1.09 6.85 -2.38 -0.02 1.08 16 33 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 34 H 0.11 3.04 7.39 -2.39 -0.02 3.02 16 35 H 0.13 3.02 7.18 -2.39 -0.02 3.00 16 36 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 37 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.08 1.69 8.13 -2.39 -0.02 1.67 16 39 H 0.14 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.14 1.67 7.67 -2.39 -0.02 1.65 16 42 H 0.13 1.70 7.67 -2.39 -0.02 1.68 16 Total: -1.00 -82.72 364.77 7.38 -75.34 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.98 Total: 13.50 kcal Atomic # 6 Polarization: 23.24 SS G_CDS: 6.05 Total: 29.29 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -1.73 Total: -84.75 kcal Atomic # 8 Polarization: -79.27 SS G_CDS: 0.19 Total: -79.07 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -82.72 7.38 -75.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766833253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.236 kcal (2) G-P(sol) polarization free energy of solvation -82.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds