Wall clock time and date at job start Fri Apr 10 2020 18:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99614 * 2 1 4 4 H 1.48501 * 109.47122 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47487 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.47092 * 60.00836 * 3 2 1 7 7 C 1.37877 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99685 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99839 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47153 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00139 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00022 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99775 * 179.97438 * 11 10 9 14 14 N 1.46502 * 109.46931 * 179.97438 * 13 11 10 15 15 N 1.40595 * 127.45010 * 89.97296 * 14 13 11 16 16 N 1.28860 * 106.97137 * 180.02562 * 15 14 13 17 17 N 1.28389 * 110.63026 * 0.02562 * 16 15 14 18 18 C 1.32007 * 110.46553 * 359.97438 * 17 16 15 19 19 C 1.46850 * 126.58398 * 180.02562 * 18 17 16 20 20 C 1.34499 * 119.99431 * 359.97438 * 19 18 17 21 21 C 1.47316 * 119.99573 * 179.97438 * 20 19 18 22 22 C 1.39771 * 120.16763 * 359.72603 * 21 20 19 23 23 C 1.37915 * 119.83405 * 179.69423 * 22 21 20 24 24 C 1.38382 * 120.16344 * 0.58517 * 23 22 21 25 25 C 1.38389 * 120.33314 * 359.71522 * 24 23 22 26 26 C 1.37912 * 120.16997 * 359.97438 * 25 24 23 27 27 H 0.97001 * 120.00009 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47710 * 59.99999 * 9 7 2 29 29 H 1.09004 * 109.47207 * 299.99689 * 9 7 2 30 30 H 0.97003 * 119.99722 * 359.97438 * 10 9 7 31 31 H 1.08993 * 109.47339 * 59.99788 * 13 11 10 32 32 H 1.09000 * 109.47243 * 299.99299 * 13 11 10 33 33 H 1.07994 * 120.00363 * 179.97438 * 19 18 17 34 34 H 1.08001 * 120.00620 * 0.02562 * 20 19 18 35 35 H 1.08002 * 120.07978 * 0.02562 * 22 21 20 36 36 H 1.07998 * 119.91995 * 180.32066 * 23 22 21 37 37 H 1.07997 * 119.83563 * 179.73757 * 24 23 22 38 38 H 1.08003 * 119.91554 * 180.02562 * 25 24 23 39 39 H 1.07993 * 120.08762 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5616 -5.1049 0.0000 13 6 2.7333 -6.0287 -0.0006 14 7 2.0008 -7.2975 0.0008 15 7 1.5717 -8.0381 -1.1146 16 7 0.9684 -9.0832 -0.6627 17 7 0.9678 -9.0854 0.6212 18 6 1.5867 -8.0155 1.0849 19 6 1.7906 -7.6653 2.4964 20 6 1.3235 -8.4742 3.4641 21 6 1.5286 -8.1232 4.8801 22 6 2.2130 -6.9534 5.2217 23 6 2.3956 -6.6282 6.5495 24 6 1.9137 -7.4630 7.5424 25 6 1.2405 -8.6261 7.2119 26 6 1.0446 -8.9614 5.8886 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6249 -2.5571 0.8897 30 1 3.1568 -3.4353 -0.0009 31 1 3.3606 -5.9708 0.8888 32 1 3.3592 -5.9711 -0.8911 33 1 2.3156 -6.7584 2.7573 34 1 0.7989 -9.3815 3.2032 35 1 2.5932 -6.3031 4.4478 36 1 2.9197 -5.7221 6.8151 37 1 2.0633 -7.2054 8.5805 38 1 0.8669 -9.2725 7.9924 39 1 0.5188 -9.8691 5.6322 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768458027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:45 Heat of formation + Delta-G solvation = 93.461271 kcal Electronic energy + Delta-G solvation = -24032.753208 eV Core-core repulsion = 20363.261637 eV Total energy + Delta-G solvation = -3669.491571 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.95255 -40.72350 -40.09818 -36.60179 -36.22847 -35.64760 -34.43783 -33.11923 -31.87850 -30.92218 -30.05761 -28.65944 -25.59494 -25.10153 -24.07128 -23.61134 -22.75214 -21.71638 -20.56028 -19.42724 -18.64292 -17.98758 -17.86301 -17.02669 -16.99497 -16.77317 -16.67872 -16.10713 -15.86297 -15.45839 -15.07191 -14.76312 -14.45003 -14.23908 -14.06993 -13.97806 -13.95495 -13.71996 -13.15809 -13.05872 -12.91803 -12.76572 -12.54799 -12.24167 -12.19711 -12.10013 -12.06612 -11.79707 -11.47630 -10.95657 -10.84607 -10.83277 -9.97911 -9.85501 -9.14915 -8.30398 -6.47069 -0.81009 0.16618 0.51954 0.68413 0.98796 1.44389 1.45259 1.46808 1.58623 1.76186 2.22338 2.44057 2.84670 2.98054 3.05732 3.12991 3.53451 3.67393 3.80970 3.94278 4.04893 4.10841 4.20511 4.27358 4.33701 4.40069 4.53683 4.59115 4.95852 5.01498 5.04718 5.09538 5.18227 5.19403 5.27855 5.38875 5.57121 5.60921 5.62050 5.65790 5.81013 6.06780 6.62093 6.71081 7.19322 7.30731 7.33744 8.81790 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.003363 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.382809 B = 8323.429979 C =10702.811025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.983 3.017 4 H -0.248 1.248 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.551 4.551 8 H 0.091 0.909 9 C 0.267 3.733 10 N -0.690 5.690 11 C 0.483 3.517 12 O -0.595 6.595 13 C 0.108 3.892 14 N -0.363 5.363 15 N -0.096 5.096 16 N -0.064 5.064 17 N -0.355 5.355 18 C 0.299 3.701 19 C -0.137 4.137 20 C 0.001 3.999 21 C -0.094 4.094 22 C -0.110 4.110 23 C -0.133 4.133 24 C -0.110 4.110 25 C -0.131 4.131 26 C -0.099 4.099 27 H 0.268 0.732 28 H -0.016 1.016 29 H -0.008 1.008 30 H 0.417 0.583 31 H 0.187 0.813 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.189 -14.700 15.143 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.171 1.171 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.589 4.589 8 H 0.109 0.891 9 C 0.144 3.856 10 N -0.340 5.340 11 C 0.268 3.732 12 O -0.476 6.476 13 C -0.017 4.017 14 N -0.159 5.159 15 N -0.081 5.081 16 N -0.059 5.059 17 N -0.208 5.208 18 C 0.027 3.973 19 C -0.158 4.158 20 C -0.022 4.022 21 C -0.095 4.095 22 C -0.128 4.128 23 C -0.151 4.151 24 C -0.128 4.128 25 C -0.148 4.148 26 C -0.118 4.118 27 H 0.077 0.923 28 H 0.002 0.998 29 H 0.010 0.990 30 H 0.255 0.745 31 H 0.204 0.796 32 H 0.189 0.811 33 H 0.183 0.817 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.746 -15.540 13.992 23.511 hybrid contribution 0.236 1.810 -0.021 1.825 sum 10.982 -13.731 13.971 22.457 Atomic orbital electron populations 1.70150 1.08392 1.28496 1.50102 1.26063 0.95685 1.03981 0.93953 0.85129 0.79367 0.77403 0.77440 1.17100 1.21023 1.20620 1.21643 0.94563 0.90133 1.52586 0.89058 1.18583 0.88617 0.84109 0.94246 1.46010 1.11823 1.04532 1.71669 1.21252 0.89605 0.85363 0.77005 1.90761 1.19385 1.85306 1.52169 1.22270 0.92113 0.75030 1.12276 1.51462 1.41291 1.19193 1.03989 1.82376 1.15272 1.01728 1.08756 1.77792 1.11338 1.12996 1.03793 1.74714 1.22377 1.20966 1.02708 1.24289 0.92304 0.88140 0.92569 1.21018 1.08124 1.03461 0.83210 1.22403 0.91551 0.97404 0.90847 1.19014 1.01702 0.96812 0.91926 1.21684 0.97567 0.95890 0.97697 1.21433 1.00465 1.00666 0.92559 1.21701 0.96295 0.94153 1.00667 1.21452 0.99161 0.97750 0.96486 1.21658 0.98069 0.99362 0.92667 0.92347 0.99806 0.99033 0.74529 0.79566 0.81137 0.81677 0.84243 0.84570 0.84065 0.83711 0.83460 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.62 13.29 21.45 0.28 -54.34 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.98 40.17 29.54 68.60 2.03 42.20 16 4 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.55 -27.71 9.28 25.60 0.24 -27.48 16 8 H 0.09 4.01 7.60 -2.91 -0.02 3.99 16 9 C 0.27 13.57 5.43 85.63 0.46 14.04 16 10 N -0.69 -24.60 5.55 -466.79 -2.59 -27.19 16 11 C 0.48 16.74 7.90 87.66 0.69 17.44 16 12 O -0.60 -28.44 16.43 -3.02 -0.05 -28.49 16 13 C 0.11 2.26 6.86 85.63 0.59 2.85 16 14 N -0.36 -10.62 3.21 -343.89 -1.10 -11.72 16 15 N -0.10 -3.40 13.92 37.02 0.52 -2.88 16 16 N -0.06 -2.36 13.36 37.02 0.49 -1.87 16 17 N -0.35 -11.90 11.76 -51.83 -0.61 -12.51 16 18 C 0.30 8.59 7.88 136.06 1.07 9.66 16 19 C -0.14 -2.88 9.20 23.67 0.22 -2.66 16 20 C 0.00 0.02 9.55 23.80 0.23 0.25 16 21 C -0.09 -1.62 5.87 -20.15 -0.12 -1.74 16 22 C -0.11 -1.78 9.41 22.56 0.21 -1.56 16 23 C -0.13 -1.88 10.03 22.23 0.22 -1.65 16 24 C -0.11 -1.36 10.04 22.34 0.22 -1.13 16 25 C -0.13 -1.61 10.03 22.23 0.22 -1.38 16 26 C -0.10 -1.44 9.80 22.57 0.22 -1.22 16 27 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 28 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 29 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H 0.42 10.89 8.32 -92.71 -0.77 10.12 16 31 H 0.19 1.81 7.61 -2.39 -0.02 1.79 16 32 H 0.17 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.17 2.58 5.67 -2.91 -0.02 2.56 16 34 H 0.14 2.64 7.75 -2.91 -0.02 2.62 16 35 H 0.14 1.83 6.17 -2.91 -0.02 1.81 16 36 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 37 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 38 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 39 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -82.14 353.17 4.24 -77.90 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.33 Total: 12.89 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 4.95 Total: 6.01 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -3.01 Total: -110.51 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.05 Total: -28.49 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -82.14 4.24 -77.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768458027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.357 kcal (2) G-P(sol) polarization free energy of solvation -82.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds