Wall clock time and date at job start Fri Apr 10 2020 18:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00109 * 2 1 4 4 H 1.48504 * 109.46948 * 239.99953 * 3 2 1 5 5 H 1.48496 * 109.47286 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46895 * 120.00462 * 3 2 1 7 7 C 1.37881 * 119.99416 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99624 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00497 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47317 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00265 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99615 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00362 * 179.97438 * 11 10 9 14 14 N 1.46497 * 109.47185 * 179.97438 * 13 11 10 15 15 N 1.40591 * 127.45636 * 270.16223 * 14 13 11 16 16 N 1.28849 * 106.98078 * 180.26973 * 15 14 13 17 17 N 1.28394 * 110.62567 * 359.74356 * 16 15 14 18 18 C 1.32014 * 110.46599 * 0.02562 * 17 16 15 19 19 C 1.46845 * 126.58122 * 180.02562 * 18 17 16 20 20 C 1.34497 * 120.00589 * 6.75227 * 19 18 17 21 21 C 1.47316 * 119.99692 * 9.98559 * 20 19 18 22 22 C 1.39778 * 120.16264 * 44.18936 * 21 20 19 23 23 C 1.37916 * 119.82982 * 179.97438 * 22 21 20 24 24 C 1.38387 * 120.16714 * 0.02562 * 23 22 21 25 25 C 1.38393 * 120.33144 * 359.97438 * 24 23 22 26 26 C 1.37904 * 120.16588 * 0.02562 * 25 24 23 27 27 H 0.96998 * 119.99728 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47411 * 59.99350 * 9 7 2 29 29 H 1.09003 * 109.46617 * 299.99607 * 9 7 2 30 30 H 0.96999 * 119.99884 * 359.97438 * 10 9 7 31 31 H 1.09003 * 109.47032 * 60.00059 * 13 11 10 32 32 H 1.09003 * 109.47155 * 299.99780 * 13 11 10 33 33 H 1.08004 * 120.00070 * 186.75900 * 19 18 17 34 34 H 1.08000 * 120.00708 * 189.98537 * 20 19 18 35 35 H 1.07989 * 120.08474 * 359.95645 * 22 21 20 36 36 H 1.08004 * 119.91620 * 180.02562 * 23 22 21 37 37 H 1.07995 * 119.83305 * 179.71928 * 24 23 22 38 38 H 1.07999 * 119.91787 * 179.97438 * 25 24 23 39 39 H 1.08004 * 120.08581 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5612 -5.1049 0.0020 13 6 2.7329 -6.0289 0.0005 14 7 2.0003 -7.2976 0.0018 15 7 1.5713 -8.0359 1.1186 16 7 0.9733 -9.0850 0.6691 17 7 0.9719 -9.0894 -0.6149 18 6 1.5846 -8.0170 -1.0809 19 6 1.7847 -7.6677 -2.4930 20 6 1.2059 -8.4057 -3.4570 21 6 0.2005 -9.4224 -3.1025 22 6 -0.7991 -9.1269 -2.1713 23 6 -1.7371 -10.0838 -1.8448 24 6 -1.6901 -11.3340 -2.4363 25 6 -0.7034 -11.6339 -3.3592 26 6 0.2415 -10.6874 -3.6957 27 1 -0.4849 0.8400 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 3.1566 -3.4355 0.0002 31 1 3.3602 -5.9711 0.8900 32 1 3.3589 -5.9713 -0.8900 33 1 2.3968 -6.8181 -2.7577 34 1 1.4780 -8.2529 -4.4909 35 1 -0.8366 -8.1520 -1.7084 36 1 -2.5104 -9.8568 -1.1258 37 1 -2.4247 -12.0807 -2.1734 38 1 -0.6727 -12.6119 -3.8164 39 1 1.0107 -10.9227 -4.4163 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768458029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:48 Heat of formation + Delta-G solvation = 134.754417 kcal Electronic energy + Delta-G solvation = -24670.677861 eV Core-core repulsion = 21002.976896 eV Total energy + Delta-G solvation = -3667.700965 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.75709 -39.21104 -39.11826 -35.46971 -34.76486 -34.34560 -32.54137 -31.63362 -30.74942 -29.73633 -29.06409 -26.99175 -24.40610 -23.55682 -22.70278 -22.15983 -22.09548 -20.25814 -19.54549 -17.86376 -17.55589 -16.73731 -16.29688 -15.88950 -15.55133 -15.32116 -15.11046 -15.08169 -14.46204 -14.22135 -14.17270 -13.43522 -13.38562 -13.14991 -12.98049 -12.67451 -12.31984 -12.12994 -12.04869 -11.74854 -11.32221 -11.15134 -11.13087 -11.03789 -10.97661 -10.82633 -10.75997 -10.43755 -9.57996 -9.55433 -9.34523 -8.90117 -8.75258 -8.17654 -8.17397 -6.28862 -4.37548 0.33364 1.29971 1.50273 1.80472 2.04474 2.78128 2.86060 3.17072 3.22392 3.23842 3.65163 3.87632 3.97057 4.22416 4.23886 4.45924 4.73051 4.78951 4.91028 4.99276 5.04593 5.07526 5.13181 5.29582 5.42456 5.44285 5.55474 5.62311 5.80470 5.91440 6.04210 6.09949 6.24284 6.48406 6.56207 6.63448 7.03606 7.06652 7.09814 7.31779 7.46490 7.80549 8.28734 8.53026 8.60397 8.76984 9.29292 10.81081 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.002741 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.460613 B =10213.332306 C =10543.633408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.701 5.701 11 C 0.483 3.517 12 O -0.536 6.536 13 C 0.099 3.901 14 N -0.357 5.357 15 N -0.076 5.076 16 N -0.050 5.050 17 N -0.314 5.314 18 C 0.284 3.716 19 C -0.121 4.121 20 C -0.021 4.021 21 C -0.081 4.081 22 C -0.036 4.036 23 C -0.123 4.123 24 C -0.104 4.104 25 C -0.136 4.136 26 C -0.094 4.094 27 H 0.268 0.732 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.394 0.606 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.764 -18.237 -8.554 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.350 5.350 11 C 0.265 3.735 12 O -0.413 6.413 13 C -0.028 4.028 14 N -0.153 5.153 15 N -0.060 5.060 16 N -0.044 5.044 17 N -0.165 5.165 18 C 0.011 3.989 19 C -0.142 4.142 20 C -0.044 4.044 21 C -0.081 4.081 22 C -0.055 4.055 23 C -0.141 4.141 24 C -0.122 4.122 25 C -0.154 4.154 26 C -0.112 4.112 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.227 0.773 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.265 -19.042 -7.395 20.868 hybrid contribution 1.358 1.986 -0.297 2.424 sum 5.622 -17.055 -7.692 19.536 Atomic orbital electron populations 1.69960 1.06164 1.27683 1.48232 1.24959 0.94934 0.99555 0.94475 0.86439 0.79410 0.82126 0.78746 1.19983 1.20993 1.19988 1.21132 0.93246 0.90216 1.54084 0.91776 1.19193 0.88118 0.81532 0.98045 1.46422 1.11610 1.05421 1.71527 1.20306 0.89424 0.84524 0.79291 1.90767 1.16159 1.84397 1.49992 1.21936 0.94079 0.79135 1.07608 1.51431 1.40810 1.18404 1.04677 1.82488 1.14684 1.01589 1.07278 1.77891 1.10925 1.12060 1.03568 1.75226 1.20076 1.18972 1.02271 1.23985 0.94123 0.89209 0.91618 1.21000 1.05800 1.02367 0.85015 1.22353 0.91544 0.91650 0.98889 1.18824 0.96192 0.94212 0.98874 1.21053 0.92564 0.99079 0.92817 1.20938 0.99401 0.93651 1.00109 1.21166 0.98189 0.96445 0.96431 1.20916 0.95943 0.99160 0.99362 1.21093 0.98357 0.92583 0.99195 0.92204 0.95250 0.95274 0.77284 0.84904 0.85262 0.83422 0.83673 0.87104 0.86411 0.86517 0.86413 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.14 13.29 55.43 0.74 -24.40 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 19.93 29.54 -169.99 -5.02 14.91 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.55 -13.93 9.28 -34.44 -0.32 -14.25 16 8 H 0.06 1.49 7.60 -52.48 -0.40 1.09 16 9 C 0.25 6.19 5.43 -5.20 -0.03 6.16 16 10 N -0.70 -12.78 5.55 -61.48 -0.34 -13.12 16 11 C 0.48 8.46 7.90 -10.99 -0.09 8.37 16 12 O -0.54 -12.22 16.43 5.55 0.09 -12.13 16 13 C 0.10 1.17 6.87 -5.20 -0.04 1.14 16 14 N -0.36 -5.33 3.21 -60.05 -0.19 -5.52 16 15 N -0.08 -1.32 13.92 60.35 0.84 -0.48 16 16 N -0.05 -0.88 13.36 60.35 0.81 -0.08 16 17 N -0.31 -5.04 7.64 32.27 0.25 -4.79 16 18 C 0.28 4.06 6.80 -154.61 -1.05 3.01 16 19 C -0.12 -1.27 9.73 -37.42 -0.36 -1.64 16 20 C -0.02 -0.20 9.80 -37.21 -0.36 -0.57 16 21 C -0.08 -0.94 4.67 -105.06 -0.49 -1.43 16 22 C -0.04 -0.49 6.41 -39.12 -0.25 -0.75 16 23 C -0.12 -1.55 10.03 -39.64 -0.40 -1.95 16 24 C -0.10 -1.13 10.04 -39.47 -0.40 -1.52 16 25 C -0.14 -1.35 10.03 -39.65 -0.40 -1.75 16 26 C -0.09 -0.94 9.79 -39.13 -0.38 -1.33 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.39 5.70 8.32 -40.82 -0.34 5.37 16 31 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.13 0.94 7.57 -51.93 -0.39 0.54 16 33 H 0.15 1.13 7.60 -52.48 -0.40 0.73 16 34 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.11 1.77 6.98 -52.49 -0.37 1.40 16 36 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -34.96 347.56 -6.67 -41.63 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.41 Total: 3.61 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -4.66 Total: -4.86 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 2.09 Total: -48.40 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.96 -6.67 -41.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768458029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.385 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds