Wall clock time and date at job start Fri Apr 10 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47550 * 2 1 4 4 C 1.53004 * 109.47232 * 240.00152 * 2 1 3 5 5 C 1.50699 * 109.47017 * 59.99613 * 4 2 1 6 6 H 1.08002 * 119.99847 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00098 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00243 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00178 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46759 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46923 * 119.99717 * 9 7 5 12 12 H 1.48499 * 109.47039 * 240.00285 * 9 7 5 13 13 C 1.53003 * 109.47315 * 120.00489 * 2 1 3 14 14 N 1.46506 * 109.46700 * 299.99420 * 13 2 1 15 15 C 1.34774 * 119.99876 * 179.97438 * 14 13 2 16 16 O 1.21280 * 120.00079 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99931 * 180.02562 * 15 14 13 18 18 C 1.52996 * 109.47215 * 179.97438 * 17 15 14 19 19 H 1.09003 * 110.66922 * 52.05745 * 18 17 15 20 20 S 1.82385 * 110.60897 * 289.12313 * 18 17 15 21 21 C 1.77248 * 94.48568 * 241.48335 * 20 18 17 22 22 N 1.30281 * 126.27413 * 180.02562 * 21 20 18 23 23 N 1.37049 * 107.44967 * 0.02562 * 21 20 18 24 24 C 1.32214 * 120.28531 * 359.97438 * 23 21 20 25 25 O 1.21249 * 122.88130 * 179.73231 * 24 23 21 26 26 H 1.09004 * 109.46721 * 299.99795 * 1 2 3 27 27 H 1.08995 * 109.47082 * 59.99658 * 1 2 3 28 28 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47888 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47089 * 300.00558 * 3 2 1 31 31 H 1.09004 * 109.46966 * 59.99783 * 3 2 1 32 32 H 1.08998 * 109.47567 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.47112 * 300.00436 * 4 2 1 34 34 H 0.96993 * 120.00448 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47129 * 180.02562 * 13 2 1 36 36 H 1.08996 * 109.47155 * 59.99309 * 13 2 1 37 37 H 0.97002 * 119.99988 * 0.02562 * 14 13 2 38 38 H 1.08998 * 109.47274 * 60.00172 * 17 15 14 39 39 H 1.08997 * 109.47012 * 300.00256 * 17 15 14 40 40 H 0.96995 * 120.00288 * 180.02562 * 22 21 20 41 41 H 0.97001 * 119.86103 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3805 7 6 1.8702 -0.4821 -3.7320 8 7 2.6256 -1.5519 -3.8528 9 14 1.2480 0.3989 -5.2572 10 1 0.4244 1.5665 -4.8530 11 1 2.4033 0.8648 -6.0656 12 1 0.4223 -0.5339 -6.0654 13 6 2.0400 -0.7214 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8769 -0.4915 3.6695 16 8 2.5734 -1.4781 3.7807 17 6 1.3742 0.2186 4.8999 18 6 1.8833 -0.5033 6.1491 19 1 2.9638 -0.6388 6.1018 20 16 1.0432 -2.1097 6.3493 21 6 0.3183 -1.6933 7.9123 22 7 -0.4481 -2.4597 8.6351 23 7 0.7118 -0.4173 8.2208 24 6 1.4962 0.2562 7.3967 25 8 1.8687 1.3882 7.6204 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7209 -1.2496 33 1 1.6766 -1.7489 -1.2494 34 1 2.8599 -1.8833 -4.7337 35 1 3.1300 -0.7209 1.2494 36 1 1.6766 -1.7490 1.2492 37 1 0.9938 0.7578 2.3564 38 1 0.2843 0.2186 4.8996 39 1 1.7376 1.2462 4.9003 40 1 -0.7972 -2.1374 9.4808 41 1 0.4137 -0.0065 9.0474 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813704297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:05 Heat of formation + Delta-G solvation = -60.240951 kcal Electronic energy + Delta-G solvation = -23396.131700 eV Core-core repulsion = 19823.126302 eV Total energy + Delta-G solvation = -3573.005399 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.38818 -39.78386 -37.58389 -37.24373 -34.03808 -33.73090 -32.80611 -32.07686 -27.65692 -26.96675 -26.56019 -25.44157 -24.35864 -22.90829 -21.52723 -20.37305 -18.82004 -18.64437 -18.30968 -17.14714 -16.53404 -16.41362 -16.25387 -15.75997 -15.37641 -14.99848 -14.52532 -14.37095 -13.65264 -13.46046 -13.37943 -13.28977 -12.95123 -12.80187 -12.44706 -12.12071 -12.09362 -11.57741 -11.20777 -11.14320 -11.05700 -10.86482 -10.68401 -10.45516 -10.33421 -10.27968 -10.16624 -9.98125 -9.92750 -9.22348 -8.95119 -8.86149 -8.47959 -8.38713 -6.02524 -4.03920 0.52351 0.84669 1.22502 2.03776 2.26991 2.58849 3.10746 3.28514 3.36869 3.38761 3.47791 3.99438 4.42992 4.51301 4.63342 4.78415 5.00510 5.13913 5.33136 5.44357 5.46755 5.57062 5.69455 6.00498 6.11227 6.16102 6.21719 6.33495 6.45843 6.58673 6.68180 6.83714 7.01348 7.03333 7.07739 7.32460 7.55309 7.61294 7.72639 7.95997 8.20457 8.37755 9.01106 9.59543 11.08930 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.032726 B = 0.002439 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.393675 B =11476.389842 C =11766.597241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.128 3.872 14 N -0.715 5.715 15 C 0.510 3.490 16 O -0.537 6.537 17 C -0.123 4.123 18 C -0.104 4.104 19 H 0.163 0.837 20 S 0.042 5.958 21 C 0.372 3.628 22 N -0.662 5.662 23 N -0.692 5.692 24 C 0.535 3.465 25 O -0.483 6.483 26 H 0.028 0.972 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.260 0.740 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.400 0.600 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.346 0.654 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 4.343 23.142 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.005 3.995 14 N -0.366 5.366 15 C 0.294 3.706 16 O -0.415 6.415 17 C -0.165 4.165 18 C -0.237 4.237 19 H 0.180 0.820 20 S 0.267 5.733 21 C -0.018 4.018 22 N -0.296 5.296 23 N -0.347 5.347 24 C 0.318 3.682 25 O -0.354 6.354 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.128 0.872 39 H 0.139 0.861 40 H 0.167 0.833 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -4.416 2.144 22.204 22.741 hybrid contribution -0.619 2.811 0.789 2.984 sum -5.035 4.955 22.994 24.054 Atomic orbital electron populations 1.21768 0.95216 1.01240 1.00265 1.20912 0.95513 0.95851 0.95035 1.21772 1.00578 0.95877 1.00284 1.19100 0.96377 0.95267 0.89468 1.21208 1.31174 1.12047 0.90490 0.92211 1.25016 0.95312 0.95071 0.99113 1.69967 1.36985 1.23006 1.23377 0.86598 0.78611 0.79679 0.83463 1.19811 1.21139 1.21119 1.21691 0.99036 0.96127 0.82644 1.46142 1.52839 1.31896 1.05721 1.20111 0.80959 0.84854 0.84637 1.90741 1.38092 1.26089 1.86618 1.21659 1.03623 1.01288 0.89955 1.24047 1.08013 0.95514 0.96083 0.81951 1.88002 1.55876 1.16923 1.12502 1.25086 0.94219 0.82169 1.00366 1.70060 1.14879 1.31853 1.12762 1.44565 1.48844 1.16095 1.25226 1.19656 0.77608 0.86379 0.84589 1.90867 1.52854 1.16104 1.75567 0.95259 0.91396 0.93272 0.93322 0.91389 0.95246 0.96322 0.96277 0.93063 0.91588 0.91497 0.76438 0.87232 0.86148 0.83295 0.74957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 2 C -0.07 -1.29 0.54 -154.51 -0.08 -1.37 16 3 C -0.13 -2.09 8.05 37.15 0.30 -1.79 16 4 C 0.04 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.19 7.65 -34.44 -0.26 -13.45 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 9 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.13 2.05 4.57 -4.04 -0.02 2.03 16 14 N -0.71 -8.79 4.96 -60.29 -0.30 -9.09 16 15 C 0.51 6.10 7.63 -10.99 -0.08 6.02 16 16 O -0.54 -8.31 15.20 5.56 0.08 -8.23 16 17 C -0.12 -0.99 5.22 -27.89 -0.15 -1.13 16 18 C -0.10 -0.87 2.84 -27.69 -0.08 -0.95 16 19 H 0.16 1.36 7.89 -51.93 -0.41 0.95 16 20 S 0.04 0.40 21.87 -107.50 -2.35 -1.95 16 21 C 0.37 3.06 8.92 -88.69 -0.79 2.27 16 22 N -0.66 -5.70 14.13 30.83 0.44 -5.27 16 23 N -0.69 -4.59 5.22 -12.31 -0.06 -4.66 16 24 C 0.54 4.42 7.52 -11.92 -0.09 4.33 16 25 O -0.48 -5.24 18.01 5.58 0.10 -5.14 16 26 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 27 H 0.07 1.22 6.62 -51.93 -0.34 0.87 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 31 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.40 4.03 6.16 -40.82 -0.25 3.77 16 38 H 0.11 0.69 8.13 -51.93 -0.42 0.27 16 39 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.35 2.10 8.92 -40.82 -0.36 1.74 16 41 H 0.41 1.85 8.91 -40.82 -0.36 1.48 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -31.95 351.98 -7.84 -39.80 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.60 Total: 2.34 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -1.17 Total: -3.69 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.81 Total: -44.25 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.19 Total: -13.37 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -2.35 Total: -1.95 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.95 -7.84 -39.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813704297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.444 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds