Wall clock time and date at job start Fri Apr 10 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47550 * 2 1 4 4 C 1.53004 * 109.47232 * 240.00152 * 2 1 3 5 5 C 1.50699 * 109.47017 * 59.99613 * 4 2 1 6 6 H 1.08002 * 119.99847 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00098 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00243 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00178 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46759 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46923 * 119.99717 * 9 7 5 12 12 H 1.48499 * 109.47039 * 240.00285 * 9 7 5 13 13 C 1.53003 * 109.47315 * 120.00489 * 2 1 3 14 14 N 1.46506 * 109.46700 * 299.99420 * 13 2 1 15 15 C 1.34774 * 119.99876 * 179.97438 * 14 13 2 16 16 O 1.21280 * 120.00079 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99931 * 180.02562 * 15 14 13 18 18 C 1.52996 * 109.47215 * 179.97438 * 17 15 14 19 19 H 1.09003 * 110.66922 * 52.05745 * 18 17 15 20 20 S 1.82385 * 110.60897 * 289.12313 * 18 17 15 21 21 C 1.77248 * 94.48568 * 241.48335 * 20 18 17 22 22 N 1.30281 * 126.27413 * 180.02562 * 21 20 18 23 23 N 1.37049 * 107.44967 * 0.02562 * 21 20 18 24 24 C 1.32214 * 120.28531 * 359.97438 * 23 21 20 25 25 O 1.21249 * 122.88130 * 179.73231 * 24 23 21 26 26 H 1.09004 * 109.46721 * 299.99795 * 1 2 3 27 27 H 1.08995 * 109.47082 * 59.99658 * 1 2 3 28 28 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47888 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47089 * 300.00558 * 3 2 1 31 31 H 1.09004 * 109.46966 * 59.99783 * 3 2 1 32 32 H 1.08998 * 109.47567 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.47112 * 300.00436 * 4 2 1 34 34 H 0.96993 * 120.00448 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47129 * 180.02562 * 13 2 1 36 36 H 1.08996 * 109.47155 * 59.99309 * 13 2 1 37 37 H 0.97002 * 119.99988 * 0.02562 * 14 13 2 38 38 H 1.08998 * 109.47274 * 60.00172 * 17 15 14 39 39 H 1.08997 * 109.47012 * 300.00256 * 17 15 14 40 40 H 0.96995 * 120.00288 * 180.02562 * 22 21 20 41 41 H 0.97001 * 119.86103 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3805 7 6 1.8702 -0.4821 -3.7320 8 7 2.6256 -1.5519 -3.8528 9 14 1.2480 0.3989 -5.2572 10 1 0.4244 1.5665 -4.8530 11 1 2.4033 0.8648 -6.0656 12 1 0.4223 -0.5339 -6.0654 13 6 2.0400 -0.7214 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8769 -0.4915 3.6695 16 8 2.5734 -1.4781 3.7807 17 6 1.3742 0.2186 4.8999 18 6 1.8833 -0.5033 6.1491 19 1 2.9638 -0.6388 6.1018 20 16 1.0432 -2.1097 6.3493 21 6 0.3183 -1.6933 7.9123 22 7 -0.4481 -2.4597 8.6351 23 7 0.7118 -0.4173 8.2208 24 6 1.4962 0.2562 7.3967 25 8 1.8687 1.3882 7.6204 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7209 -1.2496 33 1 1.6766 -1.7489 -1.2494 34 1 2.8599 -1.8833 -4.7337 35 1 3.1300 -0.7209 1.2494 36 1 1.6766 -1.7490 1.2492 37 1 0.9938 0.7578 2.3564 38 1 0.2843 0.2186 4.8996 39 1 1.7376 1.2462 4.9003 40 1 -0.7972 -2.1374 9.4808 41 1 0.4137 -0.0065 9.0474 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813704297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:05 Heat of formation + Delta-G solvation = -83.359185 kcal Electronic energy + Delta-G solvation = -23397.134182 eV Core-core repulsion = 19823.126302 eV Total energy + Delta-G solvation = -3574.007881 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.06549 -40.83619 -38.67282 -38.23995 -35.22281 -34.76226 -33.95054 -33.38337 -29.20862 -28.31009 -27.90599 -26.58331 -25.02531 -24.67107 -22.28641 -21.35151 -19.90437 -19.37603 -19.25587 -18.34710 -18.07333 -17.36166 -17.06384 -16.65774 -16.54252 -16.32656 -15.77178 -15.51081 -14.86373 -14.65722 -14.58740 -14.21689 -14.08129 -13.90161 -13.78849 -13.66595 -13.02300 -12.86032 -12.67617 -12.54531 -12.29724 -12.26428 -12.19550 -11.91762 -11.81881 -11.48892 -11.19820 -10.98632 -10.84939 -10.80785 -10.72510 -10.49952 -10.01133 -9.21945 -8.12119 -6.19360 -0.15640 0.18466 0.56489 1.39099 1.42833 1.44337 1.55473 1.63066 1.64859 2.21507 2.46279 2.73085 3.22754 3.30344 3.80677 3.98330 4.07463 4.08556 4.14413 4.28112 4.42318 4.55854 4.74045 4.79055 4.86329 4.96817 5.02329 5.16332 5.17996 5.37809 5.44738 5.50978 5.55649 5.59286 5.61672 5.85354 5.93509 6.23871 6.33242 6.59571 6.76562 6.96708 7.26690 7.48469 9.00538 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.032726 B = 0.002439 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.393675 B =11476.389842 C =11766.597241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 C -0.123 4.123 4 C 0.038 3.962 5 C -0.510 4.510 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.956 3.044 10 H -0.256 1.256 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.142 3.858 14 N -0.706 5.706 15 C 0.510 3.490 16 O -0.575 6.575 17 C -0.113 4.113 18 C -0.096 4.096 19 H 0.161 0.839 20 S -0.001 6.001 21 C 0.383 3.617 22 N -0.674 5.674 23 N -0.678 5.678 24 C 0.548 3.452 25 O -0.506 6.506 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.073 0.927 32 H -0.014 1.014 33 H -0.014 1.014 34 H 0.259 0.741 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.415 0.585 38 H 0.135 0.865 39 H 0.146 0.854 40 H 0.360 0.640 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.617 6.749 24.796 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.000 4.000 5 C -0.548 4.548 6 H 0.091 0.909 7 C -0.203 4.203 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.180 1.180 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.018 3.982 14 N -0.358 5.358 15 C 0.297 3.703 16 O -0.455 6.455 17 C -0.154 4.154 18 C -0.229 4.229 19 H 0.179 0.821 20 S 0.225 5.775 21 C -0.008 4.008 22 N -0.310 5.310 23 N -0.333 5.333 24 C 0.331 3.669 25 O -0.378 6.378 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.004 0.996 33 H 0.004 0.996 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.254 0.746 38 H 0.153 0.847 39 H 0.164 0.836 40 H 0.183 0.817 41 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -6.187 4.584 23.904 25.114 hybrid contribution -0.066 1.988 0.358 2.021 sum -6.253 6.572 24.262 25.903 Atomic orbital electron populations 1.21704 0.93580 1.00985 1.01716 1.20700 0.96693 0.96271 0.92848 1.21708 0.99920 0.94647 1.01731 1.18994 0.94287 0.94238 0.92461 1.21634 1.30160 1.11941 0.91078 0.90930 1.25937 0.95768 0.95886 1.02703 1.70121 1.38954 1.25003 1.23965 0.85522 0.78020 0.78854 0.79400 1.17999 1.21184 1.21171 1.21198 0.97868 0.95387 0.83725 1.45897 1.53082 1.32159 1.04699 1.20759 0.79935 0.84297 0.85317 1.90739 1.39713 1.27911 1.87157 1.21664 1.05060 1.01555 0.87156 1.24039 1.07833 0.94458 0.96566 0.82115 1.88204 1.56551 1.18777 1.13976 1.24719 0.94028 0.82456 0.99632 1.70016 1.14964 1.32381 1.13604 1.44350 1.48110 1.15423 1.25459 1.19457 0.77247 0.85815 0.84427 1.90873 1.53854 1.17045 1.76062 0.90792 0.92854 0.94449 0.94445 0.92856 0.90780 0.99585 0.99576 0.93241 0.93393 0.93419 0.74637 0.84683 0.83646 0.81745 0.73459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.80 8.05 71.98 0.58 -3.22 16 2 C -0.06 -2.27 0.54 -52.18 -0.03 -2.30 16 3 C -0.12 -3.80 8.05 71.98 0.58 -3.22 16 4 C 0.04 1.86 4.04 29.85 0.12 1.98 16 5 C -0.51 -26.69 7.65 25.60 0.20 -26.49 16 6 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 7 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 8 N -0.94 -56.54 13.29 21.45 0.28 -56.25 16 9 Si 0.96 43.04 29.54 68.60 2.03 45.06 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.14 4.57 4.57 86.38 0.39 4.97 16 14 N -0.71 -15.74 4.96 -463.06 -2.30 -18.03 16 15 C 0.51 11.23 7.63 87.66 0.67 11.90 16 16 O -0.58 -17.56 15.20 -3.03 -0.05 -17.60 16 17 C -0.11 -1.44 5.22 29.85 0.16 -1.29 16 18 C -0.10 -1.42 2.84 29.97 0.08 -1.34 16 19 H 0.16 2.48 7.89 -2.39 -0.02 2.46 16 20 S 0.00 -0.01 21.87 -56.49 -1.24 -1.24 16 21 C 0.38 5.57 8.92 179.67 1.60 7.17 16 22 N -0.67 -10.42 14.13 -56.36 -0.80 -11.21 16 23 N -0.68 -7.35 5.22 -312.68 -1.63 -8.98 16 24 C 0.55 7.68 7.52 88.18 0.66 8.34 16 25 O -0.51 -9.64 18.01 -2.93 -0.05 -9.69 16 26 H 0.07 1.62 6.86 -2.39 -0.02 1.60 16 27 H 0.05 1.81 6.62 -2.39 -0.02 1.80 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 31 H 0.07 1.62 6.86 -2.38 -0.02 1.60 16 32 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 33 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 34 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.42 6.62 6.16 -92.71 -0.57 6.05 16 38 H 0.14 1.12 8.13 -2.39 -0.02 1.10 16 39 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.36 3.64 8.92 -92.71 -0.83 2.81 16 41 H 0.42 2.69 8.91 -92.71 -0.83 1.86 16 Total: -1.00 -72.05 351.98 0.60 -71.45 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -1.13 Total: 9.88 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 5.48 Total: -3.37 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -4.44 Total: -94.48 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.10 Total: -27.30 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.24 Total: -1.24 kcal Total: -72.05 0.60 -71.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813704297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.907 kcal (2) G-P(sol) polarization free energy of solvation -72.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds