Wall clock time and date at job start Fri Apr 10 2020 18:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30504 * 125.64999 * 2 1 4 4 C 1.34121 * 109.25569 * 180.02562 * 3 2 1 5 5 N 1.48032 * 125.98812 * 179.97438 * 4 3 2 6 6 O 1.21795 * 120.00003 * 0.02562 * 5 4 3 7 7 O 1.21806 * 119.99728 * 180.02562 * 5 4 3 8 8 C 1.34666 * 108.02399 * 359.97438 * 4 3 2 9 9 N 1.35039 * 125.64967 * 180.02562 * 2 1 3 10 10 C 1.46494 * 126.39779 * 359.93985 * 9 2 1 11 11 C 1.50709 * 109.46932 * 85.00345 * 10 9 2 12 12 O 1.20822 * 119.99682 * 359.97438 * 11 10 9 13 13 O 1.34229 * 120.00104 * 180.02562 * 11 10 9 14 14 C 1.45195 * 116.99939 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.47110 * 179.97438 * 14 13 11 16 16 O 1.42898 * 109.46759 * 64.99708 * 15 14 13 17 17 C 1.42905 * 113.99924 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47068 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00295 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99802 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00133 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99990 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47273 * 89.99782 * 22 20 18 24 24 H 1.48501 * 109.47213 * 210.00254 * 22 20 18 25 25 H 1.48509 * 109.46897 * 329.99968 * 22 20 18 26 26 H 1.08994 * 109.47164 * 89.97181 * 1 2 3 27 27 H 1.08995 * 109.47176 * 209.97823 * 1 2 3 28 28 H 1.09005 * 109.47031 * 329.97805 * 1 2 3 29 29 H 1.08000 * 126.59536 * 180.02562 * 8 4 3 30 30 H 1.09000 * 109.47306 * 204.99577 * 10 9 2 31 31 H 1.08997 * 109.47689 * 325.00275 * 10 9 2 32 32 H 1.08997 * 109.46892 * 299.99145 * 14 13 11 33 33 H 1.08997 * 109.47476 * 59.99718 * 14 13 11 34 34 H 1.08993 * 109.47011 * 184.99626 * 15 14 13 35 35 H 1.08997 * 109.46787 * 305.00165 * 15 14 13 36 36 H 1.08998 * 109.46831 * 300.00306 * 17 16 15 37 37 H 1.08998 * 109.46983 * 60.00167 * 17 16 15 38 38 H 0.97003 * 120.00166 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6819 -0.0006 5 7 4.7269 1.5855 -0.0013 6 8 4.5654 2.7927 -0.0009 7 8 5.8531 1.1216 -0.0022 8 6 3.5926 -0.6642 -0.0004 9 7 2.2940 -1.0973 -0.0005 10 6 1.8425 -2.4909 0.0001 11 6 1.5687 -2.9309 -1.4151 12 8 1.7335 -2.1593 -2.3301 13 8 1.1409 -4.1796 -1.6589 14 6 0.8981 -4.5342 -3.0458 15 6 0.4204 -5.9856 -3.1250 16 8 -0.8473 -6.1058 -2.4764 17 6 -1.3861 -7.4292 -2.4943 18 6 -2.7164 -7.4396 -1.7862 19 1 -3.1111 -6.5268 -1.3651 20 6 -3.4296 -8.6144 -1.6760 21 7 -4.5907 -8.6234 -1.0586 22 14 -2.7465 -10.1935 -2.4038 23 1 -1.9196 -10.8904 -1.3861 24 1 -3.8686 -11.0739 -2.8173 25 1 -1.9083 -9.8713 -3.5866 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3633 -0.8901 0.5135 28 1 -0.3633 0.8898 0.5142 29 1 4.4776 -1.2831 -0.0003 30 1 2.6169 -3.1236 0.4338 31 1 0.9302 -2.5771 0.5903 32 1 0.1340 -3.8767 -3.4604 33 1 1.8206 -4.4241 -3.6159 34 1 0.3232 -6.2796 -4.1700 35 1 1.1441 -6.6338 -2.6309 36 1 -1.5209 -7.7527 -3.5264 37 1 -0.6999 -8.1078 -1.9875 38 1 -5.0923 -9.4501 -0.9807 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815197896.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:10 Heat of formation + Delta-G solvation = -83.423044 kcal Electronic energy + Delta-G solvation = -24955.700604 eV Core-core repulsion = 20803.103989 eV Total energy + Delta-G solvation = -4152.596615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.22909 -42.93078 -41.61725 -38.87992 -37.73453 -37.67130 -35.79158 -34.87949 -33.42580 -32.06069 -30.23731 -29.59978 -29.28454 -26.70361 -24.28577 -23.91675 -23.04213 -22.74967 -21.50733 -20.21853 -19.63229 -19.35324 -19.10326 -18.78505 -18.18985 -17.99052 -17.46008 -17.10348 -16.53956 -16.49040 -16.12670 -15.73364 -15.11225 -14.94507 -14.68429 -14.47825 -14.02219 -13.89364 -13.56552 -13.39993 -13.34602 -13.00645 -12.84573 -12.66854 -12.60827 -12.39528 -12.37611 -12.18220 -11.91131 -11.78564 -11.77080 -11.40297 -11.33774 -10.92177 -10.40309 -10.27639 -8.35852 -6.43879 -0.99801 -0.03313 0.30483 0.86597 0.95888 1.35521 1.36113 1.38666 1.48923 1.65304 2.30559 2.92250 2.93388 2.97442 3.10276 3.32223 3.46283 3.62351 3.87258 3.98428 4.09499 4.19406 4.35064 4.42531 4.49339 4.50835 4.53422 4.57326 4.69211 4.87631 5.01365 5.18526 5.23236 5.38619 5.44403 5.91616 6.02939 6.41667 6.59057 6.59851 6.70960 7.20380 8.80803 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.031272 B = 0.002192 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.157913 B =12770.996181 C =13237.319496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.268 3.732 3 N -0.493 5.493 4 C 0.007 3.993 5 N 0.069 4.931 6 O -0.201 6.201 7 O -0.136 6.136 8 C 0.103 3.897 9 N -0.433 5.433 10 C 0.110 3.890 11 C 0.448 3.552 12 O -0.532 6.532 13 O -0.343 6.343 14 C 0.078 3.922 15 C 0.048 3.952 16 O -0.404 6.404 17 C 0.179 3.821 18 C -0.544 4.544 19 H 0.032 0.968 20 C 0.012 3.988 21 N -0.942 5.942 22 Si 0.954 3.046 23 H -0.259 1.259 24 H -0.279 1.279 25 H -0.242 1.242 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.248 0.752 30 H 0.196 0.804 31 H 0.182 0.818 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.015 0.985 37 H 0.017 0.983 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.979 8.371 2.119 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.002 3.998 3 N -0.213 5.213 4 C -0.201 4.201 5 N 0.585 4.415 6 O -0.407 6.407 7 O -0.356 6.356 8 C -0.039 4.039 9 N -0.116 5.116 10 C -0.011 4.011 11 C 0.291 3.709 12 O -0.422 6.422 13 O -0.258 6.258 14 C 0.005 3.995 15 C -0.028 4.028 16 O -0.324 6.324 17 C 0.103 3.897 18 C -0.582 4.582 19 H 0.050 0.950 20 C -0.186 4.186 21 N -0.581 5.581 22 Si 0.775 3.225 23 H -0.183 1.183 24 H -0.204 1.204 25 H -0.165 1.165 26 H 0.109 0.891 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.265 0.735 30 H 0.213 0.787 31 H 0.199 0.801 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.033 0.967 37 H 0.035 0.965 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.878 8.973 1.950 18.342 hybrid contribution 0.456 -0.842 -0.604 1.132 sum 16.334 8.131 1.346 18.296 Atomic orbital electron populations 1.20657 0.80701 1.07169 1.05374 1.24067 0.97338 0.78889 0.99460 1.69651 0.99619 1.30815 1.21253 1.20702 0.87376 0.88333 1.23708 1.42474 1.01062 1.00967 0.96973 1.94593 1.92879 0.97232 1.55948 1.94497 1.08204 1.80381 1.52555 1.22953 0.89955 0.92869 0.98156 1.45441 1.05253 1.08462 1.52404 1.21963 1.09854 0.78043 0.91214 1.24125 0.73349 0.80382 0.93074 1.90776 1.49303 1.54456 1.47636 1.86557 1.76166 1.30611 1.32494 1.23259 1.01978 0.95513 0.78781 1.22762 0.86423 0.94982 0.98657 1.87900 1.34912 1.31058 1.78505 1.20352 0.92584 0.81190 0.95574 1.21155 1.03934 0.96064 1.37062 0.95000 1.25841 0.94776 1.03009 0.95022 1.70027 1.14918 1.29382 1.43810 0.85632 0.78833 0.77837 0.80179 1.18311 1.20436 1.16535 0.89125 0.86560 0.87244 0.73545 0.78695 0.80071 0.91234 0.87189 0.89531 0.91104 0.96725 0.96526 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.19 71.24 0.73 -0.20 16 2 C 0.27 4.73 7.89 138.13 1.09 5.82 16 3 N -0.49 -12.56 11.23 -178.84 -2.01 -14.57 16 4 C 0.01 0.16 8.02 128.16 1.03 1.18 16 5 N 0.07 1.92 4.45 -50.71 -0.23 1.69 16 6 O -0.20 -6.55 19.24 18.89 0.36 -6.19 16 7 O -0.14 -3.41 19.02 18.88 0.36 -3.05 16 8 C 0.10 1.46 11.25 83.08 0.93 2.39 16 9 N -0.43 -5.42 2.24 -518.34 -1.16 -6.58 16 10 C 0.11 0.67 6.48 85.64 0.55 1.22 16 11 C 0.45 7.27 8.03 71.24 0.57 7.85 16 12 O -0.53 -12.57 16.17 21.98 0.36 -12.21 16 13 O -0.34 -7.02 10.19 -48.76 -0.50 -7.51 16 14 C 0.08 1.69 5.84 71.98 0.42 2.11 16 15 C 0.05 1.25 6.33 71.98 0.46 1.71 16 16 O -0.40 -16.10 10.30 -145.56 -1.50 -17.60 16 17 C 0.18 7.95 4.76 71.24 0.34 8.29 16 18 C -0.54 -30.72 9.99 25.60 0.26 -30.47 16 19 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 20 C 0.01 0.64 5.47 84.66 0.46 1.11 16 21 N -0.94 -56.43 13.96 21.45 0.30 -56.13 16 22 Si 0.95 40.11 27.47 68.60 1.88 42.00 16 23 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 24 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 26 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.12 0.64 7.17 -2.39 -0.02 0.62 16 28 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.25 1.24 8.06 -2.91 -0.02 1.21 16 30 H 0.20 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.18 0.17 7.21 -2.39 -0.02 0.15 16 32 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 33 H 0.11 1.78 8.13 -2.39 -0.02 1.76 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.02 0.63 7.20 -2.39 -0.02 0.62 16 37 H 0.02 0.70 7.57 -2.39 -0.02 0.68 16 38 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -85.61 349.81 5.75 -79.86 By element: Atomic # 1 Polarization: -1.77 SS G_CDS: 1.04 Total: -0.72 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 6.84 Total: 1.01 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -3.10 Total: -75.58 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -0.92 Total: -46.56 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 1.88 Total: 42.00 kcal Total: -85.61 5.75 -79.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815197896.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.558 kcal (2) G-P(sol) polarization free energy of solvation -85.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds