Wall clock time and date at job start Fri Apr 10 2020 18:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.52996 * 109.47491 * 179.72204 * 6 4 3 8 8 H 1.08999 * 109.47456 * 54.99697 * 7 6 4 9 9 C 1.50695 * 109.47310 * 174.99936 * 7 6 4 10 10 H 1.08005 * 120.00302 * 239.99738 * 9 7 6 11 11 C 1.37884 * 120.00111 * 59.99751 * 9 7 6 12 12 N 1.31510 * 119.99863 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99841 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47512 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.46828 * 120.00434 * 13 11 9 16 16 H 1.48497 * 109.46907 * 239.99752 * 13 11 9 17 17 O 1.45203 * 109.46931 * 294.99585 * 7 6 4 18 18 C 1.34227 * 116.99812 * 149.99881 * 17 7 6 19 19 O 1.20832 * 120.00335 * 0.02562 * 18 17 7 20 20 C 1.50698 * 120.00021 * 180.02562 * 18 17 7 21 21 C 1.53952 * 113.74438 * 278.74305 * 20 18 17 22 22 N 1.47818 * 86.03708 * 222.08451 * 21 20 18 23 23 C 1.34774 * 134.45247 * 204.64535 * 22 21 20 24 24 C 1.50690 * 120.00387 * 359.86304 * 23 22 21 25 25 O 1.21287 * 119.99409 * 179.86413 * 23 22 21 26 26 C 1.47582 * 91.05236 * 24.54428 * 22 21 20 27 27 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 28 28 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 30 30 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 31 31 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 32 32 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 33 33 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 34 34 H 0.96998 * 120.00236 * 180.02562 * 12 11 9 35 35 H 1.09007 * 112.94616 * 50.33379 * 20 18 17 36 36 H 1.08999 * 113.76674 * 336.34550 * 21 20 18 37 37 H 1.08997 * 113.76584 * 107.74543 * 21 20 18 38 38 H 1.09007 * 109.47189 * 60.00305 * 24 23 22 39 39 H 1.09002 * 109.47546 * 179.97438 * 24 23 22 40 40 H 1.09004 * 109.47415 * 300.00515 * 24 23 22 41 41 H 1.08995 * 113.77069 * 221.15021 * 26 22 21 42 42 H 1.09009 * 113.86895 * 89.76631 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4485 2.8573 0.0107 8 1 5.7835 2.2522 -0.8318 9 6 6.0247 4.2448 -0.1070 10 1 6.6624 4.4958 -0.9418 11 6 5.7377 5.1940 0.8510 12 7 4.9616 4.8883 1.8678 13 14 6.4513 6.9141 0.7047 14 1 7.2862 7.0012 -0.5202 15 1 5.3465 7.9031 0.6228 16 1 7.2890 7.2054 1.8958 17 8 5.8973 2.2506 1.2512 18 6 7.0420 1.5510 1.2081 19 8 7.6493 1.4493 0.1684 20 6 7.5699 0.8923 2.4564 21 6 8.3365 1.8505 3.3862 22 7 9.3065 0.7477 3.5538 23 6 10.1925 0.4073 4.5106 24 6 10.3320 1.2591 5.7459 25 8 10.8775 -0.5847 4.3774 26 6 8.9135 0.1683 2.2546 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 3.5878 3.4722 -0.8839 33 1 3.5816 3.4669 0.8960 34 1 4.7594 5.5562 2.5415 35 1 6.8197 0.2901 2.9690 36 1 8.7464 2.7225 2.8768 37 1 7.7958 2.1039 4.2981 38 1 9.3778 1.2957 6.2716 39 1 11.0905 0.8291 6.4000 40 1 10.6282 2.2683 5.4598 41 1 8.8328 -0.9186 2.2647 42 1 9.4925 0.5440 1.4109 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870618062.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:11 Heat of formation + Delta-G solvation = -179.236221 kcal Electronic energy + Delta-G solvation = -26737.724801 eV Core-core repulsion = 22684.513758 eV Total energy + Delta-G solvation = -4053.211043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.45636 -39.84173 -38.85915 -37.37605 -36.17822 -35.23308 -33.16874 -31.63792 -31.11870 -30.35120 -28.63626 -26.36542 -26.03630 -24.00584 -23.16857 -21.74112 -20.01669 -19.55000 -18.83791 -17.40110 -17.21998 -16.88726 -16.50296 -16.17773 -15.70287 -15.61007 -15.45625 -14.77572 -14.69190 -14.46588 -13.90733 -13.50445 -13.02729 -12.91314 -12.83442 -12.66832 -12.56770 -12.40623 -12.23618 -12.02977 -11.94091 -11.63829 -11.51929 -11.31444 -11.12930 -10.95581 -10.87523 -10.80738 -10.31736 -10.19054 -9.87988 -9.77261 -9.53357 -9.36973 -8.86785 -8.82801 -8.64697 -6.33865 -4.51171 2.64560 2.82593 2.94726 3.10335 3.20373 3.21670 3.25688 3.29159 3.85938 4.18214 4.42451 4.60828 4.97279 5.01469 5.04939 5.11362 5.17281 5.25091 5.34664 5.37311 5.43209 5.51825 5.56656 5.68746 5.73697 5.77730 5.86137 5.90263 5.94499 6.04554 6.22504 6.27809 6.53287 6.83084 6.94968 7.20351 7.59044 7.71424 7.85381 7.90744 8.16542 8.44517 8.57299 8.99480 9.25763 10.68239 Molecular weight = 313.14amu Principal moments of inertia in cm(-1) A = 0.009641 B = 0.004678 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.524602 B = 5983.694514 C = 8104.269335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.518 6.518 6 C -0.102 4.102 7 C 0.230 3.770 8 H 0.047 0.953 9 C -0.546 4.546 10 H 0.071 0.929 11 C 0.082 3.918 12 N -0.860 5.860 13 Si 0.896 3.104 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.280 1.280 17 O -0.326 6.326 18 C 0.475 3.525 19 O -0.525 6.525 20 C -0.122 4.122 21 C 0.125 3.875 22 N -0.648 5.648 23 C 0.534 3.466 24 C -0.168 4.168 25 O -0.554 6.554 26 C 0.127 3.873 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.141 0.859 34 H 0.267 0.733 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.541 -3.907 4.317 6.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.302 3.698 5 O -0.406 6.406 6 C -0.140 4.140 7 C 0.177 3.823 8 H 0.065 0.935 9 C -0.582 4.582 10 H 0.089 0.911 11 C -0.125 4.125 12 N -0.495 5.495 13 Si 0.723 3.277 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.206 1.206 17 O -0.240 6.240 18 C 0.316 3.684 19 O -0.416 6.416 20 C -0.142 4.142 21 C 0.003 3.997 22 N -0.384 5.384 23 C 0.324 3.676 24 C -0.227 4.227 25 O -0.433 6.433 26 C 0.005 3.995 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.159 0.841 34 H 0.077 0.923 35 H 0.144 0.856 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.784 -4.732 4.259 6.948 hybrid contribution 0.243 0.872 -0.059 0.907 sum -2.541 -3.860 4.200 6.245 Atomic orbital electron populations 1.21777 0.93273 1.02351 1.03345 1.22862 0.94876 0.81742 1.02056 1.86578 1.26089 1.31022 1.84677 1.24918 0.79502 0.94305 0.71078 1.90592 1.60261 1.43694 1.46004 1.21878 0.96678 0.88121 1.07302 1.20080 0.88102 0.92560 0.81533 0.93541 1.21416 1.32119 0.94292 1.10411 0.91132 1.25099 0.93839 0.99048 0.94490 1.69875 1.34186 1.34493 1.10977 0.86470 0.79250 0.83474 0.78553 1.19411 1.20483 1.20627 1.86592 1.36361 1.59182 1.41908 1.22461 0.80829 0.76355 0.88711 1.90553 1.58749 1.59729 1.32569 1.22940 0.97538 0.98683 0.95053 1.23161 0.86526 0.90975 0.99069 1.50152 1.39336 1.29012 1.19897 1.20464 0.77383 0.85596 0.84109 1.21859 1.04582 1.00770 0.95529 1.90708 1.44371 1.28341 1.79867 1.23093 0.91040 0.99802 0.85607 0.91691 0.90831 0.91589 0.91848 0.91736 0.87825 0.84139 0.92269 0.85597 0.88481 0.88650 0.89375 0.89091 0.89399 0.89527 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.29 37.15 0.38 -1.16 16 2 C 0.06 0.83 6.19 37.15 0.23 1.06 16 3 O -0.37 -6.45 10.22 -39.26 -0.40 -6.85 16 4 C 0.46 9.33 7.84 36.00 0.28 9.61 16 5 O -0.52 -11.65 15.17 -23.95 -0.36 -12.01 16 6 C -0.10 -2.19 5.23 -27.89 -0.15 -2.34 16 7 C 0.23 5.54 1.64 -27.89 -0.05 5.50 16 8 H 0.05 1.19 6.97 -51.93 -0.36 0.83 16 9 C -0.55 -13.77 8.91 -34.44 -0.31 -14.08 16 10 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 11 C 0.08 1.99 5.25 -17.82 -0.09 1.90 16 12 N -0.86 -20.95 10.93 55.43 0.61 -20.35 16 13 Si 0.90 19.02 29.54 -169.99 -5.02 14.00 16 14 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 15 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 17 O -0.33 -7.70 8.53 -44.45 -0.38 -8.08 16 18 C 0.47 10.24 7.46 36.00 0.27 10.50 16 19 O -0.52 -12.58 15.13 -18.75 -0.28 -12.86 16 20 C -0.12 -2.00 4.44 -90.84 -0.40 -2.40 16 21 C 0.13 1.78 8.18 -2.83 -0.02 1.76 16 22 N -0.65 -9.59 3.61 -178.18 -0.64 -10.23 16 23 C 0.53 7.98 8.17 -10.99 -0.09 7.89 16 24 C -0.17 -1.70 10.07 36.00 0.36 -1.34 16 25 O -0.55 -10.45 17.81 5.55 0.10 -10.35 16 26 C 0.13 1.99 8.17 -2.96 -0.02 1.96 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 32 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 33 H 0.14 3.20 6.22 -51.93 -0.32 2.88 16 34 H 0.27 6.17 8.31 -40.82 -0.34 5.83 16 35 H 0.13 1.87 8.14 -51.93 -0.42 1.45 16 36 H 0.10 1.46 8.09 -51.93 -0.42 1.04 16 37 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.10 1.69 7.43 -51.92 -0.39 1.30 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -31.58 366.61 -6.58 -38.16 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.11 Total: 4.19 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 0.39 Total: 18.87 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: -0.04 Total: -30.58 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -1.33 Total: -50.16 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.58 -6.58 -38.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870618062.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.079 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds