Wall clock time and date at job start Fri Apr 10 2020 18:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47094 * 2 1 4 4 O 1.42897 * 109.47326 * 120.00066 * 2 1 3 5 5 C 1.52999 * 109.47096 * 240.00160 * 2 1 3 6 6 N 1.46500 * 109.47211 * 176.29629 * 5 2 1 7 7 C 1.46502 * 119.99849 * 83.37795 * 6 5 2 8 8 C 1.50703 * 109.46852 * 75.74268 * 7 6 5 9 9 C 1.38637 * 119.74738 * 93.69341 * 8 7 6 10 10 C 1.37618 * 120.25177 * 180.27804 * 9 8 7 11 11 C 1.40721 * 119.74104 * 359.51637 * 10 9 8 12 12 C 1.41396 * 120.24428 * 180.23130 * 11 10 9 13 13 H 1.08002 * 119.99946 * 154.11318 * 12 11 10 14 14 C 1.39946 * 119.99936 * 334.11331 * 12 11 10 15 15 N 1.30821 * 119.99865 * 334.22385 * 14 12 11 16 16 Si 1.86793 * 119.99780 * 154.22819 * 14 12 11 17 17 H 1.48500 * 109.47465 * 94.97957 * 16 14 12 18 18 H 1.48503 * 109.47174 * 214.98252 * 16 14 12 19 19 H 1.48504 * 109.47182 * 334.97799 * 16 14 12 20 20 C 1.40724 * 119.50831 * 0.48244 * 11 10 9 21 21 C 1.37612 * 119.74895 * 359.74816 * 20 11 10 22 22 S 1.65596 * 120.00369 * 263.38143 * 6 5 2 23 23 C 1.81396 * 104.44863 * 270.00193 * 22 6 5 24 24 O 1.42102 * 104.27541 * 26.07230 * 22 6 5 25 25 O 1.42099 * 104.27903 * 153.92936 * 22 6 5 26 26 H 1.08996 * 109.46648 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46800 * 299.99252 * 1 2 3 28 28 H 1.08993 * 109.47253 * 60.00044 * 1 2 3 29 29 H 0.96700 * 114.00296 * 63.39378 * 4 2 1 30 30 H 1.09005 * 109.47130 * 56.30093 * 5 2 1 31 31 H 1.08999 * 109.47137 * 296.30146 * 5 2 1 32 32 H 1.08999 * 109.47368 * 315.75224 * 7 6 5 33 33 H 1.08993 * 109.47252 * 195.73992 * 7 6 5 34 34 H 1.08002 * 119.87682 * 359.97438 * 9 8 7 35 35 H 1.07993 * 120.13175 * 179.71930 * 10 9 8 36 36 H 0.97002 * 119.99359 * 179.97438 * 15 14 12 37 37 H 1.08007 * 120.12494 * 179.72818 * 20 11 10 38 38 H 1.07993 * 119.87714 * 180.02562 * 21 20 11 39 39 H 1.08997 * 109.47460 * 68.37173 * 23 22 6 40 40 H 1.09004 * 109.47317 * 188.37755 * 23 22 6 41 41 H 1.09004 * 109.47364 * 308.36946 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5023 -0.6444 -1.2947 7 6 4.3101 -1.6058 -0.5400 8 6 4.3056 -2.9340 -1.2522 9 6 5.3225 -3.2400 -2.1435 10 6 5.3256 -4.4475 -2.8037 11 6 4.2969 -5.3771 -2.5635 12 6 4.2923 -6.6229 -3.2324 13 1 3.7989 -7.4736 -2.7861 14 6 4.9271 -6.7534 -4.4727 15 7 5.0758 -5.7078 -5.2447 16 14 5.5621 -8.4208 -5.0259 17 1 4.5406 -9.0820 -5.8771 18 1 6.8138 -8.2404 -5.8044 19 1 5.8369 -9.2655 -3.8359 20 6 3.2699 -5.0556 -1.6568 21 6 3.2845 -3.8403 -1.0114 22 16 4.2422 0.5290 -2.1990 23 6 4.4578 -0.2278 -3.8334 24 8 3.2875 1.5799 -2.2582 25 8 5.5007 0.7173 -1.5668 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.7645 -1.6090 1.2072 30 1 1.6235 -0.2470 -2.1380 31 1 1.7318 -1.7662 -1.2168 32 1 3.8908 -1.7278 0.4587 33 1 5.3333 -1.2387 -0.4623 34 1 6.1126 -2.5261 -2.3240 35 1 6.1162 -4.6820 -3.5010 36 1 5.5161 -5.7984 -6.1043 37 1 2.4731 -5.7599 -1.4683 38 1 2.4977 -3.5916 -0.3148 39 1 3.4832 -0.3642 -4.3022 40 1 5.0729 0.4217 -4.4563 41 1 4.9470 -1.1957 -3.7240 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902715828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:57 Heat of formation + Delta-G solvation = -110.544452 kcal Electronic energy + Delta-G solvation = -24877.738721 eV Core-core repulsion = 21270.259248 eV Total energy + Delta-G solvation = -3607.479473 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.51912 -37.54742 -36.87002 -35.75333 -35.15200 -33.64542 -31.46663 -30.12294 -29.54909 -29.10025 -27.27895 -25.45455 -23.37079 -21.77227 -21.10044 -20.15104 -18.68429 -17.51554 -17.44225 -16.50147 -16.32519 -15.70347 -15.37795 -15.34673 -14.66146 -14.46949 -13.99354 -13.75090 -13.74538 -13.18504 -12.96072 -12.70622 -12.65270 -12.14976 -12.12930 -12.07211 -11.94725 -11.90066 -11.83977 -11.41940 -11.34734 -11.25541 -11.04959 -11.01463 -10.74479 -10.71859 -10.51811 -10.20864 -9.83622 -9.52712 -9.18934 -8.47207 -7.62198 -7.50558 -6.97499 -4.46938 0.50192 2.51829 2.86291 2.90063 2.99586 3.04083 3.17678 3.82512 4.04672 4.31981 4.43221 4.47686 4.76214 4.97774 5.07708 5.16914 5.23744 5.29618 5.52615 5.62003 5.68646 5.74261 5.93669 5.97011 6.01986 6.15588 6.19320 6.21912 6.34791 6.43499 6.79748 6.89008 6.94600 7.09392 7.19674 7.45540 7.70067 7.73554 7.90105 7.94680 8.14697 8.47827 8.74000 8.82356 9.99402 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.004163 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.953436 B = 6724.455669 C = 7556.988584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.102 0.898 4 O -0.557 6.557 5 C 0.095 3.905 6 N -0.980 5.980 7 C 0.173 3.827 8 C -0.240 4.240 9 C -0.094 4.094 10 C -0.169 4.169 11 C 0.119 3.881 12 C -0.467 4.467 13 H 0.080 0.920 14 C 0.084 3.916 15 N -0.781 5.781 16 Si 0.900 3.100 17 H -0.270 1.270 18 H -0.274 1.274 19 H -0.258 1.258 20 C -0.228 4.228 21 C -0.070 4.070 22 S 2.605 3.395 23 C -0.674 4.674 24 O -0.970 6.970 25 O -0.960 6.960 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.372 0.628 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.282 0.718 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 7.259 3.149 9.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.025 3.975 3 H 0.120 0.880 4 O -0.362 6.362 5 C -0.032 4.032 6 N -0.816 5.816 7 C 0.050 3.950 8 C -0.243 4.243 9 C -0.113 4.113 10 C -0.189 4.189 11 C 0.116 3.884 12 C -0.496 4.496 13 H 0.098 0.902 14 C -0.136 4.136 15 N -0.405 5.405 16 Si 0.724 3.276 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.182 1.182 20 C -0.248 4.248 21 C -0.089 4.089 22 S 2.698 3.302 23 C -0.823 4.823 24 O -0.960 6.960 25 O -0.951 6.951 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.219 0.781 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.233 8.812 3.335 10.329 hybrid contribution -0.065 -1.950 -1.317 2.354 sum -4.298 6.862 2.019 8.345 Atomic orbital electron populations 1.22439 0.96312 1.02573 1.02786 1.22409 0.92625 0.97415 0.85039 0.87995 1.86594 1.79609 1.27068 1.42961 1.21932 0.80071 1.02517 0.98638 1.57464 1.13169 1.49335 1.61595 1.20169 0.94772 0.85813 0.94248 1.19379 1.00604 0.97052 1.07305 1.20566 0.97000 0.96820 0.96960 1.21097 0.99963 0.94990 1.02805 1.17591 0.89166 0.92164 0.89499 1.19579 1.30939 0.96697 1.02376 0.90215 1.25896 0.93323 0.98377 0.96032 1.69856 1.30225 1.31991 1.08425 0.86437 0.79112 0.82627 0.79456 1.19522 1.19919 1.18214 1.20972 1.00375 0.97432 1.06000 1.20318 0.96251 0.94118 0.98168 1.04936 0.74060 0.74315 0.76845 1.30625 1.11666 1.15470 1.24587 1.93555 1.61868 1.53260 1.87359 1.93570 1.43668 1.84983 1.72864 0.92164 0.91814 0.91430 0.78091 0.89896 0.89414 0.89892 0.89641 0.89515 0.87597 0.90675 0.89069 0.89611 0.85677 0.86221 0.84301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 9.55 37.16 0.36 -1.40 16 2 C 0.09 1.03 3.84 -26.73 -0.10 0.93 16 3 H 0.10 1.38 8.10 -51.92 -0.42 0.96 16 4 O -0.56 -6.99 11.50 -35.23 -0.41 -7.40 16 5 C 0.09 1.20 4.90 -4.04 -0.02 1.18 16 6 N -0.98 -14.30 2.73 -115.66 -0.32 -14.62 16 7 C 0.17 2.77 5.71 -5.19 -0.03 2.74 16 8 C -0.24 -4.51 5.35 -104.33 -0.56 -5.06 16 9 C -0.09 -1.96 8.52 -39.66 -0.34 -2.30 16 10 C -0.17 -4.02 8.73 -38.87 -0.34 -4.36 16 11 C 0.12 2.91 5.53 -106.82 -0.59 2.32 16 12 C -0.47 -11.65 8.99 -37.74 -0.34 -11.99 16 13 H 0.08 1.93 7.96 -52.49 -0.42 1.51 16 14 C 0.08 1.98 4.93 -17.34 -0.09 1.90 16 15 N -0.78 -19.01 11.58 55.55 0.64 -18.37 16 16 Si 0.90 17.65 29.63 -169.99 -5.04 12.61 16 17 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 20 C -0.23 -5.04 9.80 -38.87 -0.38 -5.42 16 21 C -0.07 -1.33 8.66 -39.66 -0.34 -1.67 16 22 S 2.60 38.60 6.01 -107.50 -0.65 37.95 16 23 C -0.67 -8.86 10.99 101.05 1.11 -7.75 16 24 O -0.97 -15.67 16.91 -57.54 -0.97 -16.64 16 25 O -0.96 -17.00 16.49 -57.54 -0.95 -17.95 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.37 3.62 8.93 45.56 0.41 4.03 16 30 H 0.08 0.95 7.55 -51.93 -0.39 0.56 16 31 H 0.09 1.09 6.44 -51.93 -0.33 0.75 16 32 H 0.08 1.24 6.28 -51.93 -0.33 0.91 16 33 H 0.09 1.42 6.65 -51.93 -0.35 1.07 16 34 H 0.09 1.65 7.78 -52.49 -0.41 1.24 16 35 H 0.11 2.63 6.57 -52.49 -0.34 2.28 16 36 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 37 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 38 H 0.09 1.36 7.55 -52.49 -0.40 0.96 16 39 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.12 1.31 8.14 -51.92 -0.42 0.89 16 41 H 0.14 2.08 6.65 -51.92 -0.35 1.73 16 LS Contribution 349.22 15.07 5.26 5.26 Total: -1.00 -29.52 349.22 -9.08 -38.60 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -4.99 Total: 11.44 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: -1.66 Total: -30.88 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.33 Total: -32.99 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -2.33 Total: -41.99 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.04 Total: 12.61 kcal Atomic # 16 Polarization: 38.60 SS G_CDS: -0.65 Total: 37.95 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.52 -9.08 -38.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902715828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.946 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds