Wall clock time and date at job start Fri Apr 10 2020 18:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47094 * 2 1 4 4 O 1.42897 * 109.47326 * 120.00066 * 2 1 3 5 5 C 1.52999 * 109.47096 * 240.00160 * 2 1 3 6 6 N 1.46500 * 109.47211 * 176.29629 * 5 2 1 7 7 C 1.46502 * 119.99849 * 83.37795 * 6 5 2 8 8 C 1.50703 * 109.46852 * 75.74268 * 7 6 5 9 9 C 1.38637 * 119.74738 * 93.69341 * 8 7 6 10 10 C 1.37618 * 120.25177 * 180.27804 * 9 8 7 11 11 C 1.40721 * 119.74104 * 359.51637 * 10 9 8 12 12 C 1.41396 * 120.24428 * 180.23130 * 11 10 9 13 13 H 1.08002 * 119.99946 * 154.11318 * 12 11 10 14 14 C 1.39946 * 119.99936 * 334.11331 * 12 11 10 15 15 N 1.30821 * 119.99865 * 334.22385 * 14 12 11 16 16 Si 1.86793 * 119.99780 * 154.22819 * 14 12 11 17 17 H 1.48500 * 109.47465 * 94.97957 * 16 14 12 18 18 H 1.48503 * 109.47174 * 214.98252 * 16 14 12 19 19 H 1.48504 * 109.47182 * 334.97799 * 16 14 12 20 20 C 1.40724 * 119.50831 * 0.48244 * 11 10 9 21 21 C 1.37612 * 119.74895 * 359.74816 * 20 11 10 22 22 S 1.65596 * 120.00369 * 263.38143 * 6 5 2 23 23 C 1.81396 * 104.44863 * 270.00193 * 22 6 5 24 24 O 1.42102 * 104.27541 * 26.07230 * 22 6 5 25 25 O 1.42099 * 104.27903 * 153.92936 * 22 6 5 26 26 H 1.08996 * 109.46648 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46800 * 299.99252 * 1 2 3 28 28 H 1.08993 * 109.47253 * 60.00044 * 1 2 3 29 29 H 0.96700 * 114.00296 * 63.39378 * 4 2 1 30 30 H 1.09005 * 109.47130 * 56.30093 * 5 2 1 31 31 H 1.08999 * 109.47137 * 296.30146 * 5 2 1 32 32 H 1.08999 * 109.47368 * 315.75224 * 7 6 5 33 33 H 1.08993 * 109.47252 * 195.73992 * 7 6 5 34 34 H 1.08002 * 119.87682 * 359.97438 * 9 8 7 35 35 H 1.07993 * 120.13175 * 179.71930 * 10 9 8 36 36 H 0.97002 * 119.99359 * 179.97438 * 15 14 12 37 37 H 1.08007 * 120.12494 * 179.72818 * 20 11 10 38 38 H 1.07993 * 119.87714 * 180.02562 * 21 20 11 39 39 H 1.08997 * 109.47460 * 68.37173 * 23 22 6 40 40 H 1.09004 * 109.47317 * 188.37755 * 23 22 6 41 41 H 1.09004 * 109.47364 * 308.36946 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5023 -0.6444 -1.2947 7 6 4.3101 -1.6058 -0.5400 8 6 4.3056 -2.9340 -1.2522 9 6 5.3225 -3.2400 -2.1435 10 6 5.3256 -4.4475 -2.8037 11 6 4.2969 -5.3771 -2.5635 12 6 4.2923 -6.6229 -3.2324 13 1 3.7989 -7.4736 -2.7861 14 6 4.9271 -6.7534 -4.4727 15 7 5.0758 -5.7078 -5.2447 16 14 5.5621 -8.4208 -5.0259 17 1 4.5406 -9.0820 -5.8771 18 1 6.8138 -8.2404 -5.8044 19 1 5.8369 -9.2655 -3.8359 20 6 3.2699 -5.0556 -1.6568 21 6 3.2845 -3.8403 -1.0114 22 16 4.2422 0.5290 -2.1990 23 6 4.4578 -0.2278 -3.8334 24 8 3.2875 1.5799 -2.2582 25 8 5.5007 0.7173 -1.5668 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.7645 -1.6090 1.2072 30 1 1.6235 -0.2470 -2.1380 31 1 1.7318 -1.7662 -1.2168 32 1 3.8908 -1.7278 0.4587 33 1 5.3333 -1.2387 -0.4623 34 1 6.1126 -2.5261 -2.3240 35 1 6.1162 -4.6820 -3.5010 36 1 5.5161 -5.7984 -6.1043 37 1 2.4731 -5.7599 -1.4683 38 1 2.4977 -3.5916 -0.3148 39 1 3.4832 -0.3642 -4.3022 40 1 5.0729 0.4217 -4.4563 41 1 4.9470 -1.1957 -3.7240 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902715828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:53 Heat of formation + Delta-G solvation = -131.133944 kcal Electronic energy + Delta-G solvation = -24878.631549 eV Core-core repulsion = 21270.259248 eV Total energy + Delta-G solvation = -3608.372301 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 6.02 seconds Orbital eigenvalues (eV) -39.85689 -38.84115 -38.16006 -37.01928 -36.45552 -35.23771 -32.64027 -31.50147 -31.16136 -30.25786 -28.66318 -26.73345 -24.81518 -22.99833 -22.51811 -21.75680 -19.88617 -19.19586 -18.69625 -17.65635 -17.49548 -17.09101 -16.74292 -16.38072 -16.10019 -15.70234 -15.50741 -15.32156 -14.85228 -14.40478 -14.16845 -14.06286 -13.84122 -13.62859 -13.46789 -13.35181 -13.18630 -13.12153 -13.00098 -12.87283 -12.69443 -12.64898 -12.38303 -12.33317 -12.09793 -12.01058 -11.79868 -11.55643 -11.22372 -11.08748 -10.92918 -9.65200 -9.31878 -9.21893 -8.70689 -6.29121 -0.67924 0.93268 1.18368 1.37753 1.43671 1.52581 1.77911 2.19871 2.71064 2.88653 3.17344 3.58407 3.69709 3.79480 4.00693 4.06745 4.14130 4.31996 4.34746 4.42587 4.48501 4.61983 4.66955 4.84042 4.93409 4.94550 5.04588 5.05959 5.11147 5.18767 5.33296 5.35131 5.39434 5.48742 5.73241 5.74991 6.00351 6.12706 6.27690 6.42804 6.72599 6.95239 6.96393 7.06960 8.28447 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.004163 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.953436 B = 6724.455669 C = 7556.988584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.088 3.912 3 H 0.083 0.917 4 O -0.571 6.571 5 C 0.088 3.912 6 N -0.982 5.982 7 C 0.180 3.820 8 C -0.219 4.219 9 C -0.097 4.097 10 C -0.193 4.193 11 C 0.087 3.913 12 C -0.509 4.509 13 H 0.074 0.926 14 C 0.047 3.953 15 N -0.815 5.815 16 Si 0.967 3.033 17 H -0.262 1.262 18 H -0.268 1.268 19 H -0.261 1.261 20 C -0.241 4.241 21 C -0.062 4.062 22 S 2.616 3.384 23 C -0.667 4.667 24 O -0.983 6.983 25 O -0.991 6.991 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.385 0.615 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.288 0.712 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.871 7.823 3.636 10.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.027 3.973 3 H 0.101 0.899 4 O -0.379 6.379 5 C -0.038 4.038 6 N -0.818 5.818 7 C 0.056 3.944 8 C -0.222 4.222 9 C -0.116 4.116 10 C -0.213 4.213 11 C 0.085 3.915 12 C -0.538 4.538 13 H 0.092 0.908 14 C -0.170 4.170 15 N -0.440 5.440 16 Si 0.788 3.212 17 H -0.187 1.187 18 H -0.193 1.193 19 H -0.184 1.184 20 C -0.261 4.261 21 C -0.080 4.080 22 S 2.712 3.288 23 C -0.818 4.818 24 O -0.973 6.973 25 O -0.982 6.982 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.234 0.766 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.145 0.855 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.315 9.383 3.847 11.449 hybrid contribution 0.211 -1.954 -1.375 2.398 sum -5.104 7.429 2.472 9.346 Atomic orbital electron populations 1.22382 0.94313 1.03613 1.03229 1.22330 0.94113 0.96283 0.84529 0.89911 1.86564 1.79967 1.28236 1.43118 1.22176 0.78663 1.03240 0.99698 1.57316 1.14111 1.48633 1.61699 1.20065 0.95183 0.84373 0.94733 1.19712 0.99093 0.98033 1.05387 1.20778 0.98007 0.96010 0.96801 1.21019 0.99923 0.96460 1.03863 1.17911 0.90245 0.92623 0.90742 1.19779 1.33298 0.97097 1.03629 0.90823 1.26599 0.92975 1.01738 0.95652 1.69885 1.31290 1.33850 1.08981 0.85425 0.78681 0.78239 0.78827 1.18708 1.19266 1.18434 1.21186 1.00013 0.98845 1.06063 1.20677 0.96996 0.92613 0.97749 1.04476 0.73091 0.74104 0.77126 1.30539 1.12998 1.14715 1.23585 1.93536 1.62017 1.54032 1.87720 1.93530 1.45038 1.85556 1.74057 0.90817 0.91659 0.90762 0.76611 0.88627 0.88695 0.88095 0.90138 0.88169 0.89794 0.90132 0.88655 0.85480 0.84097 0.83876 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 9.55 71.98 0.69 -2.18 16 2 C 0.09 1.89 3.84 30.59 0.12 2.01 16 3 H 0.08 2.11 8.10 -2.38 -0.02 2.09 16 4 O -0.57 -12.70 11.50 -148.98 -1.71 -14.41 16 5 C 0.09 1.97 4.90 86.38 0.42 2.39 16 6 N -0.98 -26.39 2.73 -519.84 -1.42 -27.81 16 7 C 0.18 5.33 5.71 85.63 0.49 5.82 16 8 C -0.22 -7.79 5.35 -19.67 -0.11 -7.90 16 9 C -0.10 -4.00 8.52 22.22 0.19 -3.81 16 10 C -0.19 -9.41 8.73 22.73 0.20 -9.21 16 11 C 0.09 4.38 5.53 -21.29 -0.12 4.26 16 12 C -0.51 -26.27 8.99 23.46 0.21 -26.06 16 13 H 0.07 3.71 7.96 -2.91 -0.02 3.68 16 14 C 0.05 2.29 4.93 85.26 0.42 2.71 16 15 N -0.81 -40.85 11.58 21.83 0.25 -40.60 16 16 Si 0.97 36.92 29.63 68.60 2.03 38.95 16 17 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 18 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 19 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 20 C -0.24 -10.54 9.80 22.73 0.22 -10.32 16 21 C -0.06 -2.21 8.66 22.22 0.19 -2.01 16 22 S 2.62 73.12 6.01 -56.49 -0.34 72.78 16 23 C -0.67 -16.23 10.99 113.37 1.25 -14.98 16 24 O -0.98 -30.01 16.91 -127.65 -2.16 -32.17 16 25 O -0.99 -34.00 16.49 -127.65 -2.11 -36.11 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.38 6.08 8.93 -74.06 -0.66 5.42 16 30 H 0.10 1.91 7.55 -2.38 -0.02 1.89 16 31 H 0.09 2.00 6.44 -2.39 -0.02 1.98 16 32 H 0.10 2.67 6.28 -2.39 -0.01 2.65 16 33 H 0.08 2.52 6.65 -2.39 -0.02 2.50 16 34 H 0.10 3.77 7.78 -2.91 -0.02 3.75 16 35 H 0.08 4.37 6.57 -2.91 -0.02 4.35 16 36 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 37 H 0.10 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.13 3.47 7.55 -2.91 -0.02 3.45 16 39 H 0.14 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.12 3.53 6.65 -2.39 -0.02 3.51 16 Total: -1.00 -64.54 349.22 -0.89 -65.44 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.38 Total: 33.21 kcal Atomic # 6 Polarization: -63.46 SS G_CDS: 4.17 Total: -59.28 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -1.17 Total: -68.41 kcal Atomic # 8 Polarization: -76.71 SS G_CDS: -5.98 Total: -82.69 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Atomic # 16 Polarization: 73.12 SS G_CDS: -0.34 Total: 72.78 kcal Total: -64.54 -0.89 -65.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902715828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.698 kcal (2) G-P(sol) polarization free energy of solvation -64.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.02 seconds