Wall clock time and date at job start Fri Apr 10 2020 18:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48501 * 109.46882 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47444 * 300.00190 * 3 2 1 6 6 H 1.48504 * 109.47091 * 60.00357 * 3 2 1 7 7 C 1.37873 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47312 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54626 * 68.37320 * 11 10 9 13 13 O 1.42101 * 110.53678 * 291.62219 * 11 10 9 14 14 N 1.65597 * 104.45066 * 180.02562 * 11 10 9 15 15 C 1.46499 * 119.99926 * 64.71997 * 14 11 10 16 16 C 1.50700 * 109.46995 * 165.27893 * 15 14 11 17 17 C 1.38232 * 119.99748 * 269.72384 * 16 15 14 18 18 C 1.38241 * 119.99908 * 179.76583 * 17 16 15 19 19 C 1.38235 * 119.99727 * 0.48823 * 18 17 16 20 20 C 1.50700 * 120.00017 * 179.76584 * 19 18 17 21 21 C 1.53000 * 109.47350 * 270.02336 * 20 19 18 22 22 O 1.42902 * 109.47144 * 179.97438 * 21 20 19 23 23 C 1.38228 * 120.00389 * 359.79103 * 19 18 17 24 24 C 1.38235 * 120.00299 * 90.00480 * 16 15 14 25 25 H 0.97008 * 119.99976 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47136 * 60.00061 * 9 7 2 27 27 H 1.08998 * 109.47134 * 300.00552 * 9 7 2 28 28 H 1.08990 * 109.47200 * 59.99814 * 10 9 7 29 29 H 1.09004 * 109.47018 * 299.99613 * 10 9 7 30 30 H 0.97001 * 120.00224 * 245.00210 * 14 11 10 31 31 H 1.09007 * 109.47241 * 285.27714 * 15 14 11 32 32 H 1.08995 * 109.47308 * 45.27753 * 15 14 11 33 33 H 1.07998 * 120.00484 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.99994 * 180.25487 * 18 17 16 35 35 H 1.09007 * 109.46980 * 30.02189 * 20 19 18 36 36 H 1.08995 * 109.47206 * 150.02006 * 20 19 18 37 37 H 1.08998 * 109.47124 * 300.00015 * 21 20 19 38 38 H 1.09002 * 109.47108 * 60.00078 * 21 20 19 39 39 H 0.96698 * 113.99894 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00579 * 179.97438 * 23 19 18 41 41 H 1.08002 * 119.99697 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6646 -5.4194 -1.2385 13 8 0.6639 -5.4200 1.2355 14 7 2.5203 -6.3927 -0.0005 15 6 3.4218 -6.5190 1.1474 16 6 4.1467 -7.8382 1.0740 17 6 3.6057 -8.9585 1.6766 18 6 4.2682 -10.1697 1.6053 19 6 5.4766 -10.2583 0.9399 20 6 6.2015 -11.5775 0.8666 21 6 7.1430 -11.7094 2.0654 22 8 7.8299 -12.9606 1.9962 23 6 6.0205 -9.1368 0.3423 24 6 5.3554 -7.9267 0.4092 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8719 -3.6044 0.8893 29 1 2.8719 -3.6044 -0.8906 30 1 2.6185 -6.9858 -0.7618 31 1 4.1465 -5.7049 1.1315 32 1 2.8437 -6.4729 2.0702 33 1 2.6637 -8.8883 2.2003 34 1 3.8434 -11.0459 2.0726 35 1 5.4768 -12.3916 0.8824 36 1 6.7796 -11.6236 -0.0562 37 1 7.8676 -10.8953 2.0497 38 1 6.5648 -11.6634 2.9883 39 1 8.4456 -13.1122 2.7262 40 1 6.9648 -9.2059 -0.1771 41 1 5.7801 -7.0505 -0.0580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908273839.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:07 Heat of formation + Delta-G solvation = -119.567498 kcal Electronic energy + Delta-G solvation = -22744.487298 eV Core-core repulsion = 19136.616556 eV Total energy + Delta-G solvation = -3607.870742 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.90519 -37.46389 -36.60465 -35.67034 -35.39115 -33.90135 -32.96797 -31.20937 -31.16715 -29.27071 -25.62094 -25.57837 -23.02297 -23.00597 -21.68410 -20.89140 -18.96013 -17.99423 -17.56932 -16.90656 -16.24469 -16.22954 -15.59297 -15.42193 -15.16937 -15.04709 -14.70139 -14.57456 -14.51234 -13.72386 -13.47893 -13.26661 -13.06740 -12.72001 -12.52556 -12.24879 -11.90877 -11.76053 -11.65876 -11.59555 -11.50655 -11.25594 -11.13322 -11.09913 -10.96678 -10.43293 -10.41830 -10.39653 -9.82232 -9.50918 -9.18301 -9.05220 -8.90899 -8.51741 -6.13600 -4.19111 0.68822 1.04731 1.14352 3.10153 3.24333 3.31652 3.34838 3.49144 3.81845 4.23278 4.36373 4.43595 4.45965 4.65316 4.68719 4.76273 4.77881 4.83310 5.05051 5.07438 5.19879 5.21729 5.27748 5.38168 5.53081 5.55124 5.62093 5.66436 5.76867 5.81930 5.91044 6.13393 6.30095 6.36852 6.47795 6.71228 7.07464 7.13655 7.29511 7.35571 7.79532 8.16443 8.84538 9.45721 10.97407 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.025887 B = 0.002344 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.346632 B =11943.590559 C =12637.323270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.589 4.589 11 S 2.594 3.406 12 O -0.966 6.966 13 O -0.967 6.967 14 N -1.124 6.124 15 C 0.155 3.845 16 C -0.094 4.094 17 C -0.098 4.098 18 C -0.116 4.116 19 C -0.084 4.084 20 C -0.080 4.080 21 C 0.081 3.919 22 O -0.577 6.577 23 C -0.117 4.117 24 C -0.101 4.101 25 H 0.264 0.736 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.413 0.587 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.381 0.619 40 H 0.123 0.877 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.929 -21.879 4.104 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.691 3.309 12 O -0.957 6.957 13 O -0.957 6.957 14 N -0.881 5.881 15 C 0.029 3.971 16 C -0.095 4.095 17 C -0.116 4.116 18 C -0.134 4.134 19 C -0.084 4.084 20 C -0.118 4.118 21 C 0.003 3.997 22 O -0.383 6.383 23 C -0.135 4.135 24 C -0.120 4.120 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.246 0.754 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.228 0.772 40 H 0.141 0.859 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.436 -21.897 3.736 25.961 hybrid contribution 1.432 1.121 0.180 1.827 sum 14.868 -20.777 3.916 25.847 Atomic orbital electron populations 1.69968 1.06103 1.27082 1.49645 1.25078 0.94985 0.99572 0.94940 0.86411 0.79900 0.83186 0.77758 1.19673 1.20811 1.20807 1.21040 0.93083 0.89772 1.52014 0.92003 1.18972 0.92718 0.90580 0.98933 1.30445 1.13719 1.18075 1.10051 1.05543 0.74653 0.76564 0.74127 1.93557 1.71585 1.85326 1.45220 1.93536 1.71392 1.84978 1.45755 1.55876 1.52636 1.52325 1.27273 1.20191 0.92588 0.94615 0.89716 1.19890 0.95399 0.95235 0.99009 1.21177 0.99721 0.92059 0.98685 1.21061 0.94983 0.97859 0.99540 1.19706 0.95395 0.94741 0.98562 1.20459 0.98004 0.94583 0.98704 1.22154 0.94342 0.85381 0.97825 1.86451 1.60839 1.38485 1.52511 1.21041 1.00036 0.92279 1.00126 1.21138 0.94602 0.97977 0.98238 0.92584 0.94807 0.94789 0.86315 0.86087 0.75364 0.90761 0.89310 0.85385 0.85889 0.90225 0.90228 0.93379 0.93380 0.77174 0.85904 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 10 C -0.59 -10.89 6.00 37.16 0.22 -10.67 16 11 S 2.59 44.92 5.46 -107.50 -0.59 44.33 16 12 O -0.97 -19.83 18.08 -57.54 -1.04 -20.87 16 13 O -0.97 -19.51 17.51 -57.54 -1.01 -20.52 16 14 N -1.12 -14.12 5.88 -11.66 -0.07 -14.19 16 15 C 0.15 1.68 6.25 -5.19 -0.03 1.64 16 16 C -0.09 -0.93 5.28 -104.63 -0.55 -1.48 16 17 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 18 C -0.12 -0.99 9.70 -39.58 -0.38 -1.37 16 19 C -0.08 -0.68 5.13 -104.63 -0.54 -1.22 16 20 C -0.08 -0.57 5.71 -27.88 -0.16 -0.73 16 21 C 0.08 0.51 7.03 37.16 0.26 0.77 16 22 O -0.58 -4.00 13.66 -35.23 -0.48 -4.48 16 23 C -0.12 -0.95 9.70 -39.58 -0.38 -1.34 16 24 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.12 1.93 8.14 -51.93 -0.42 1.50 16 29 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 30 H 0.41 4.60 8.61 -34.47 -0.30 4.31 16 31 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 32 H 0.09 0.99 7.65 -51.93 -0.40 0.59 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 35 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.38 0.94 9.12 45.56 0.42 1.35 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -36.37 365.25 -10.15 -46.53 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.31 Total: 2.74 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -2.88 Total: -29.48 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.67 Total: -39.81 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -2.53 Total: -45.87 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 44.92 SS G_CDS: -0.59 Total: 44.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.37 -10.15 -46.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908273839.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.040 kcal (2) G-P(sol) polarization free energy of solvation -36.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds