Wall clock time and date at job start Fri Apr 10 2020 18:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48501 * 109.46882 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47444 * 300.00190 * 3 2 1 6 6 H 1.48504 * 109.47091 * 60.00357 * 3 2 1 7 7 C 1.37873 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47312 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54626 * 68.37320 * 11 10 9 13 13 O 1.42101 * 110.53678 * 291.62219 * 11 10 9 14 14 N 1.65597 * 104.45066 * 180.02562 * 11 10 9 15 15 C 1.46499 * 119.99926 * 64.71997 * 14 11 10 16 16 C 1.50700 * 109.46995 * 165.27893 * 15 14 11 17 17 C 1.38232 * 119.99748 * 269.72384 * 16 15 14 18 18 C 1.38241 * 119.99908 * 179.76583 * 17 16 15 19 19 C 1.38235 * 119.99727 * 0.48823 * 18 17 16 20 20 C 1.50700 * 120.00017 * 179.76584 * 19 18 17 21 21 C 1.53000 * 109.47350 * 270.02336 * 20 19 18 22 22 O 1.42902 * 109.47144 * 179.97438 * 21 20 19 23 23 C 1.38228 * 120.00389 * 359.79103 * 19 18 17 24 24 C 1.38235 * 120.00299 * 90.00480 * 16 15 14 25 25 H 0.97008 * 119.99976 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47136 * 60.00061 * 9 7 2 27 27 H 1.08998 * 109.47134 * 300.00552 * 9 7 2 28 28 H 1.08990 * 109.47200 * 59.99814 * 10 9 7 29 29 H 1.09004 * 109.47018 * 299.99613 * 10 9 7 30 30 H 0.97001 * 120.00224 * 245.00210 * 14 11 10 31 31 H 1.09007 * 109.47241 * 285.27714 * 15 14 11 32 32 H 1.08995 * 109.47308 * 45.27753 * 15 14 11 33 33 H 1.07998 * 120.00484 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.99994 * 180.25487 * 18 17 16 35 35 H 1.09007 * 109.46980 * 30.02189 * 20 19 18 36 36 H 1.08995 * 109.47206 * 150.02006 * 20 19 18 37 37 H 1.08998 * 109.47124 * 300.00015 * 21 20 19 38 38 H 1.09002 * 109.47108 * 60.00078 * 21 20 19 39 39 H 0.96698 * 113.99894 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00579 * 179.97438 * 23 19 18 41 41 H 1.08002 * 119.99697 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6646 -5.4194 -1.2385 13 8 0.6639 -5.4200 1.2355 14 7 2.5203 -6.3927 -0.0005 15 6 3.4218 -6.5190 1.1474 16 6 4.1467 -7.8382 1.0740 17 6 3.6057 -8.9585 1.6766 18 6 4.2682 -10.1697 1.6053 19 6 5.4766 -10.2583 0.9399 20 6 6.2015 -11.5775 0.8666 21 6 7.1430 -11.7094 2.0654 22 8 7.8299 -12.9606 1.9962 23 6 6.0205 -9.1368 0.3423 24 6 5.3554 -7.9267 0.4092 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8719 -3.6044 0.8893 29 1 2.8719 -3.6044 -0.8906 30 1 2.6185 -6.9858 -0.7618 31 1 4.1465 -5.7049 1.1315 32 1 2.8437 -6.4729 2.0702 33 1 2.6637 -8.8883 2.2003 34 1 3.8434 -11.0459 2.0726 35 1 5.4768 -12.3916 0.8824 36 1 6.7796 -11.6236 -0.0562 37 1 7.8676 -10.8953 2.0497 38 1 6.5648 -11.6634 2.9883 39 1 8.4456 -13.1122 2.7262 40 1 6.9648 -9.2059 -0.1771 41 1 5.7801 -7.0505 -0.0580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908273839.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:06 Heat of formation + Delta-G solvation = -147.780742 kcal Electronic energy + Delta-G solvation = -22745.710716 eV Core-core repulsion = 19136.616556 eV Total energy + Delta-G solvation = -3609.094160 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.55600 -38.16811 -37.94841 -37.00393 -36.47170 -35.87490 -33.69324 -33.10266 -31.84374 -29.96815 -27.57334 -26.33721 -23.65937 -23.64617 -23.55061 -21.53961 -20.30945 -19.10683 -18.51206 -18.35645 -17.61882 -17.08593 -16.75232 -16.57356 -16.46256 -15.92549 -15.75393 -15.59116 -15.17870 -15.03087 -14.51370 -14.35375 -14.11730 -13.94039 -13.68728 -13.37743 -13.18074 -13.08768 -12.96856 -12.94120 -12.81164 -12.75353 -12.23474 -12.19846 -12.09758 -11.92582 -11.87354 -11.71105 -11.16368 -10.89131 -10.64544 -10.36695 -9.82752 -9.59813 -8.25062 -6.38701 -0.67843 0.29767 0.49679 1.41827 1.42214 1.55470 1.91714 2.38743 2.78238 2.85084 3.08593 3.29773 3.36071 3.70830 3.86255 4.03595 4.10936 4.11702 4.17261 4.18767 4.36162 4.41522 4.46034 4.57279 4.58489 4.73270 4.79414 4.89050 4.95926 5.01358 5.15744 5.19438 5.30155 5.31196 5.47411 5.67129 5.69158 5.70116 6.06757 6.07726 6.11303 6.75612 6.87656 7.31429 8.87299 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.025887 B = 0.002344 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.346632 B =11943.590559 C =12637.323270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.006 4.006 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.018 3.982 10 C -0.586 4.586 11 S 2.623 3.377 12 O -1.001 7.001 13 O -0.997 6.997 14 N -1.105 6.105 15 C 0.146 3.854 16 C -0.105 4.105 17 C -0.111 4.111 18 C -0.123 4.123 19 C -0.082 4.082 20 C -0.079 4.079 21 C 0.082 3.918 22 O -0.596 6.596 23 C -0.121 4.121 24 C -0.103 4.103 25 H 0.266 0.734 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.423 0.577 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.399 0.601 40 H 0.141 0.859 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.788 -22.338 4.183 28.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.575 4.575 8 H 0.095 0.905 9 C -0.021 4.021 10 C -0.719 4.719 11 S 2.720 3.280 12 O -0.991 6.991 13 O -0.987 6.987 14 N -0.866 5.866 15 C 0.021 3.979 16 C -0.107 4.107 17 C -0.130 4.130 18 C -0.141 4.141 19 C -0.083 4.083 20 C -0.117 4.117 21 C 0.004 3.996 22 O -0.405 6.405 23 C -0.138 4.138 24 C -0.122 4.122 25 H 0.075 0.925 26 H 0.024 0.976 27 H 0.026 0.974 28 H 0.163 0.837 29 H 0.162 0.838 30 H 0.259 0.741 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.249 0.751 40 H 0.159 0.841 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 16.317 -22.365 3.821 27.948 hybrid contribution 0.596 1.120 0.183 1.282 sum 16.913 -21.245 4.004 27.449 Atomic orbital electron populations 1.70115 1.08067 1.28188 1.51067 1.26133 0.95871 1.03933 0.94529 0.85256 0.79209 0.78035 0.77684 1.17819 1.20550 1.20466 1.21563 0.94042 0.90750 1.51155 0.90460 1.18841 0.93700 0.93159 0.96397 1.30326 1.12756 1.16229 1.12565 1.04386 0.74608 0.76439 0.72606 1.93503 1.73135 1.85857 1.46632 1.93496 1.72738 1.85450 1.47028 1.55380 1.52078 1.50740 1.28394 1.20451 0.92631 0.96333 0.88483 1.19824 0.96021 0.94647 1.00196 1.21299 0.99987 0.92611 0.99120 1.21239 0.95204 0.97959 0.99660 1.19869 0.95182 0.95269 0.97942 1.20453 0.98074 0.93917 0.99211 1.22130 0.94414 0.85472 0.97536 1.86401 1.61503 1.38715 1.53873 1.21293 1.00665 0.91966 0.99915 1.21337 0.94158 0.98842 0.97820 0.92471 0.97613 0.97417 0.83664 0.83782 0.74114 0.88410 0.89852 0.85601 0.84683 0.90459 0.90127 0.92693 0.92984 0.75103 0.84125 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 2 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 3 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 4 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.54 -29.27 9.11 25.60 0.23 -29.03 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 9 C 0.02 0.92 4.98 29.85 0.15 1.07 16 10 C -0.59 -21.08 6.00 71.98 0.43 -20.65 16 11 S 2.62 90.14 5.46 -56.49 -0.31 89.83 16 12 O -1.00 -41.39 18.08 -127.65 -2.31 -43.70 16 13 O -1.00 -40.61 17.51 -127.65 -2.23 -42.85 16 14 N -1.10 -26.05 5.88 -190.79 -1.12 -27.17 16 15 C 0.15 2.88 6.25 85.63 0.54 3.41 16 16 C -0.11 -1.88 5.28 -19.87 -0.10 -1.99 16 17 C -0.11 -2.01 9.70 22.27 0.22 -1.79 16 18 C -0.12 -1.91 9.70 22.27 0.22 -1.70 16 19 C -0.08 -1.18 5.13 -19.87 -0.10 -1.28 16 20 C -0.08 -0.98 5.71 29.85 0.17 -0.81 16 21 C 0.08 0.89 7.03 71.98 0.51 1.39 16 22 O -0.60 -7.22 13.66 -148.98 -2.04 -9.25 16 23 C -0.12 -1.67 9.70 22.27 0.22 -1.45 16 24 C -0.10 -1.56 9.70 22.27 0.22 -1.34 16 25 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 26 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 27 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.15 4.40 8.14 -2.40 -0.02 4.38 16 29 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 30 H 0.42 8.69 8.61 -96.74 -0.83 7.86 16 31 H 0.10 1.48 8.09 -2.38 -0.02 1.46 16 32 H 0.08 1.75 7.65 -2.39 -0.02 1.74 16 33 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.08 0.99 8.09 -2.38 -0.02 0.97 16 36 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 37 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.40 1.26 9.12 -74.06 -0.68 0.59 16 40 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -78.92 365.25 -3.02 -81.94 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -0.47 Total: 16.70 kcal Atomic # 6 Polarization: -57.21 SS G_CDS: 3.15 Total: -54.06 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -0.84 Total: -83.58 kcal Atomic # 8 Polarization: -89.22 SS G_CDS: -6.58 Total: -95.80 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 90.14 SS G_CDS: -0.31 Total: 89.83 kcal Total: -78.92 -3.02 -81.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908273839.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.842 kcal (2) G-P(sol) polarization free energy of solvation -78.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds