Wall clock time and date at job start Fri Apr 10 2020 18:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47244 * 2 1 4 4 C 1.46508 * 119.99918 * 274.99673 * 3 2 1 5 5 C 1.50694 * 109.46853 * 274.99956 * 4 3 2 6 6 H 1.07997 * 120.00670 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99574 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00167 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99744 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46815 * 90.00119 * 9 7 5 11 11 H 1.48496 * 109.47468 * 209.99809 * 9 7 5 12 12 H 1.48499 * 109.47452 * 330.00476 * 9 7 5 13 13 S 1.65602 * 120.00125 * 94.99428 * 3 2 1 14 14 O 1.42096 * 106.40242 * 336.46385 * 13 3 2 15 15 O 1.42099 * 106.40310 * 203.53707 * 13 3 2 16 16 N 1.65606 * 107.21332 * 90.00156 * 13 3 2 17 17 C 1.47056 * 120.98116 * 90.00457 * 16 13 3 18 18 C 1.53226 * 109.29169 * 115.91909 * 17 16 13 19 19 N 1.46709 * 109.23091 * 46.32045 * 18 17 16 20 20 C 1.36096 * 126.92872 * 161.27883 * 19 18 17 21 21 C 1.34960 * 108.26883 * 179.55680 * 20 19 18 22 22 C 1.41058 * 107.46305 * 0.12438 * 21 20 19 23 23 C 1.34209 * 107.28804 * 0.08909 * 22 21 20 24 24 C 1.47474 * 120.98245 * 270.01889 * 16 13 3 25 25 H 1.08998 * 109.46596 * 60.00143 * 1 2 3 26 26 H 1.08995 * 109.47468 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47147 * 300.00523 * 1 2 3 28 28 H 1.08998 * 109.47147 * 239.99477 * 2 1 3 29 29 H 1.08998 * 109.46596 * 119.99857 * 2 1 3 30 30 H 1.08993 * 109.47073 * 35.00131 * 4 3 2 31 31 H 1.09001 * 109.46747 * 155.00452 * 4 3 2 32 32 H 0.97005 * 120.00162 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.50200 * 355.97338 * 17 16 13 34 34 H 1.09006 * 109.49402 * 235.86012 * 17 16 13 35 35 H 1.09005 * 109.50929 * 166.24409 * 18 17 16 36 36 H 1.08991 * 109.50762 * 286.34120 * 18 17 16 37 37 H 1.08001 * 125.86191 * 359.53785 * 20 19 18 38 38 H 1.07992 * 126.26796 * 180.15039 * 21 20 19 39 39 H 1.08005 * 126.35229 * 180.09042 * 22 21 20 40 40 H 1.09001 * 109.95557 * 103.81668 * 24 16 13 41 41 H 1.09001 * 110.02259 * 342.58856 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 -1.2640 5 6 3.4949 1.7887 -1.8822 6 1 4.1725 1.1116 -1.3835 7 6 3.8527 2.3604 -3.0848 8 7 3.0278 3.1853 -3.6920 9 14 5.5097 1.9644 -3.8509 10 1 5.3748 0.7807 -4.7376 11 1 5.9781 3.1277 -4.6462 12 1 6.4933 1.6698 -2.7782 13 16 2.4121 2.1202 1.4287 14 8 1.6868 1.4415 2.4448 15 8 2.3057 3.5186 1.1998 16 7 4.0144 1.8136 1.7138 17 6 5.0590 2.7213 1.2161 18 6 5.7962 3.3452 2.4057 19 7 6.1247 2.2946 3.3756 20 6 7.0574 2.3574 4.3646 21 6 7.0393 1.1881 5.0382 22 6 6.0585 0.3699 4.4396 23 6 5.5203 1.0680 3.4276 24 6 4.4358 0.6222 2.4739 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3619 1.8097 -1.9453 31 1 2.0924 3.1802 -1.0756 32 1 3.2797 3.5878 -4.5379 33 1 4.6016 3.5091 0.6177 34 1 5.7655 2.1615 0.6032 35 1 6.7140 3.8189 2.0573 36 1 5.1581 4.0916 2.8785 37 1 7.7017 3.1985 4.5742 38 1 7.6615 0.9268 5.8813 39 1 5.7904 -0.6323 4.7400 40 1 4.8269 -0.1341 1.7933 41 1 3.5918 0.2184 3.0329 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921514952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:24 Heat of formation + Delta-G solvation = -17.039843 kcal Electronic energy + Delta-G solvation = -25573.052114 eV Core-core repulsion = 22001.920056 eV Total energy + Delta-G solvation = -3571.132058 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28470 -36.85711 -36.40929 -36.08828 -35.32187 -32.94918 -32.78867 -30.02129 -29.70460 -28.17369 -26.68134 -24.98423 -23.21318 -22.88537 -21.73607 -20.54477 -19.06747 -18.07189 -17.42804 -16.91072 -16.85113 -16.36623 -15.78306 -15.52802 -14.89758 -14.38602 -13.94710 -13.73763 -13.64066 -13.49709 -13.30113 -13.00813 -12.50461 -12.20891 -12.11902 -12.11454 -12.03371 -11.97327 -11.75886 -11.70576 -11.44298 -11.28591 -11.12889 -11.01843 -10.98416 -10.56944 -10.46655 -10.11714 -9.85023 -9.06778 -8.57481 -8.46629 -8.13757 -7.88953 -6.18806 -4.26069 1.09456 2.35815 2.93680 3.12276 3.18278 3.26484 3.26839 3.39775 3.98325 4.28767 4.64630 4.66461 4.81530 5.07965 5.14247 5.15752 5.24835 5.34435 5.41008 5.54551 5.61711 5.70779 5.72728 5.75768 5.79112 6.00739 6.01567 6.10109 6.27912 6.32769 6.41374 6.55184 6.61946 6.69584 7.14409 7.28142 7.33298 7.36753 7.48629 7.57175 7.78121 8.07377 8.79410 9.40479 10.88983 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.006147 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.837315 B = 4553.993161 C = 5831.563264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.989 5.989 4 C 0.244 3.756 5 C -0.541 4.541 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 S 2.786 3.214 14 O -0.992 6.992 15 O -0.975 6.975 16 N -1.009 6.009 17 C 0.118 3.882 18 C 0.088 3.912 19 N -0.439 5.439 20 C -0.015 4.015 21 C -0.205 4.205 22 C -0.196 4.196 23 C 0.014 3.986 24 C 0.189 3.811 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.265 0.735 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.158 0.842 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.083 0.917 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.657 -4.059 11.080 12.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.831 5.831 4 C 0.122 3.878 5 C -0.580 4.580 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 S 2.795 3.205 14 O -0.976 6.976 15 O -0.959 6.959 16 N -0.846 5.846 17 C -0.008 4.008 18 C -0.036 4.036 19 N -0.115 5.115 20 C -0.145 4.145 21 C -0.230 4.230 22 C -0.221 4.221 23 C -0.099 4.099 24 C 0.063 3.937 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.176 0.824 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.101 0.899 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.946 -3.117 11.179 12.258 hybrid contribution 1.350 -0.351 -0.853 1.635 sum 5.296 -3.469 10.325 12.112 Atomic orbital electron populations 1.22204 0.96823 1.01492 1.02404 1.20996 0.93749 0.82788 1.02164 1.57770 1.78104 1.23067 1.24157 1.19213 0.97425 0.92160 0.78973 1.21543 1.02220 1.28129 1.06143 0.91939 1.24949 0.97192 0.94798 0.96847 1.69929 1.35976 1.29666 1.17023 0.86597 0.83927 0.77998 0.79448 1.20601 1.21114 1.19852 1.01816 0.72282 0.73486 0.72885 1.93536 1.70020 1.76404 1.57650 1.93568 1.85501 1.30797 1.86056 1.58418 1.25055 1.33382 1.67758 1.21562 0.91111 0.94307 0.93815 1.22421 1.01379 0.89580 0.90173 1.44088 1.29323 1.12528 1.25569 1.21707 0.97967 1.00973 0.93870 1.20838 1.03812 0.94747 1.03580 1.20411 1.01931 1.00664 0.99045 1.20514 1.00913 0.87107 1.01376 1.20170 0.95339 0.87073 0.91156 0.92058 0.92235 0.92651 0.90108 0.91936 0.94277 0.93228 0.92528 0.86348 0.89863 0.88534 0.89823 0.82427 0.84920 0.84667 0.89854 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 10.24 37.16 0.38 -2.23 16 2 C 0.13 2.16 6.06 -4.04 -0.02 2.13 16 3 N -0.99 -19.54 2.82 -115.67 -0.33 -19.87 16 4 C 0.24 5.78 5.44 -5.19 -0.03 5.75 16 5 C -0.54 -13.36 9.38 -34.44 -0.32 -13.69 16 6 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 7 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -24.41 13.29 55.43 0.74 -23.68 16 9 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 S 2.79 54.00 6.11 -107.50 -0.66 53.34 16 14 O -0.99 -19.78 15.75 -57.17 -0.90 -20.68 16 15 O -0.98 -21.71 15.41 -57.17 -0.88 -22.59 16 16 N -1.01 -16.78 3.35 -114.13 -0.38 -17.16 16 17 C 0.12 1.85 6.36 -3.62 -0.02 1.82 16 18 C 0.09 1.15 7.12 -3.81 -0.03 1.12 16 19 N -0.44 -6.22 3.15 -112.17 -0.35 -6.58 16 20 C -0.02 -0.19 11.49 -16.82 -0.19 -0.38 16 21 C -0.20 -2.61 10.87 -39.68 -0.43 -3.04 16 22 C -0.20 -2.67 10.81 -39.93 -0.43 -3.10 16 23 C 0.01 0.21 6.67 -81.56 -0.54 -0.33 16 24 C 0.19 2.74 6.87 -4.45 -0.03 2.71 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 29 H 0.06 0.92 7.61 -51.93 -0.40 0.52 16 30 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 31 H 0.05 1.29 6.91 -51.93 -0.36 0.93 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.12 2.01 7.10 -51.93 -0.37 1.64 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.11 1.50 6.99 -51.93 -0.36 1.14 16 LS Contribution 349.62 15.07 5.27 5.27 Total: -1.00 -31.01 349.62 -10.39 -41.40 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.10 Total: 3.34 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.77 Total: -7.64 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -0.33 Total: -67.28 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -1.78 Total: -43.27 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 54.00 SS G_CDS: -0.66 Total: 53.34 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.01 -10.39 -41.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921514952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.361 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds