Wall clock time and date at job start Fri Apr 10 2020 18:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47244 * 2 1 4 4 C 1.46508 * 119.99918 * 274.99673 * 3 2 1 5 5 C 1.50694 * 109.46853 * 274.99956 * 4 3 2 6 6 H 1.07997 * 120.00670 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99574 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00167 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99744 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46815 * 90.00119 * 9 7 5 11 11 H 1.48496 * 109.47468 * 209.99809 * 9 7 5 12 12 H 1.48499 * 109.47452 * 330.00476 * 9 7 5 13 13 S 1.65602 * 120.00125 * 94.99428 * 3 2 1 14 14 O 1.42096 * 106.40242 * 336.46385 * 13 3 2 15 15 O 1.42099 * 106.40310 * 203.53707 * 13 3 2 16 16 N 1.65606 * 107.21332 * 90.00156 * 13 3 2 17 17 C 1.47056 * 120.98116 * 90.00457 * 16 13 3 18 18 C 1.53226 * 109.29169 * 115.91909 * 17 16 13 19 19 N 1.46709 * 109.23091 * 46.32045 * 18 17 16 20 20 C 1.36096 * 126.92872 * 161.27883 * 19 18 17 21 21 C 1.34960 * 108.26883 * 179.55680 * 20 19 18 22 22 C 1.41058 * 107.46305 * 0.12438 * 21 20 19 23 23 C 1.34209 * 107.28804 * 0.08909 * 22 21 20 24 24 C 1.47474 * 120.98245 * 270.01889 * 16 13 3 25 25 H 1.08998 * 109.46596 * 60.00143 * 1 2 3 26 26 H 1.08995 * 109.47468 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47147 * 300.00523 * 1 2 3 28 28 H 1.08998 * 109.47147 * 239.99477 * 2 1 3 29 29 H 1.08998 * 109.46596 * 119.99857 * 2 1 3 30 30 H 1.08993 * 109.47073 * 35.00131 * 4 3 2 31 31 H 1.09001 * 109.46747 * 155.00452 * 4 3 2 32 32 H 0.97005 * 120.00162 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.50200 * 355.97338 * 17 16 13 34 34 H 1.09006 * 109.49402 * 235.86012 * 17 16 13 35 35 H 1.09005 * 109.50929 * 166.24409 * 18 17 16 36 36 H 1.08991 * 109.50762 * 286.34120 * 18 17 16 37 37 H 1.08001 * 125.86191 * 359.53785 * 20 19 18 38 38 H 1.07992 * 126.26796 * 180.15039 * 21 20 19 39 39 H 1.08005 * 126.35229 * 180.09042 * 22 21 20 40 40 H 1.09001 * 109.95557 * 103.81668 * 24 16 13 41 41 H 1.09001 * 110.02259 * 342.58856 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 -1.2640 5 6 3.4949 1.7887 -1.8822 6 1 4.1725 1.1116 -1.3835 7 6 3.8527 2.3604 -3.0848 8 7 3.0278 3.1853 -3.6920 9 14 5.5097 1.9644 -3.8509 10 1 5.3748 0.7807 -4.7376 11 1 5.9781 3.1277 -4.6462 12 1 6.4933 1.6698 -2.7782 13 16 2.4121 2.1202 1.4287 14 8 1.6868 1.4415 2.4448 15 8 2.3057 3.5186 1.1998 16 7 4.0144 1.8136 1.7138 17 6 5.0590 2.7213 1.2161 18 6 5.7962 3.3452 2.4057 19 7 6.1247 2.2946 3.3756 20 6 7.0574 2.3574 4.3646 21 6 7.0393 1.1881 5.0382 22 6 6.0585 0.3699 4.4396 23 6 5.5203 1.0680 3.4276 24 6 4.4358 0.6222 2.4739 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3619 1.8097 -1.9453 31 1 2.0924 3.1802 -1.0756 32 1 3.2797 3.5878 -4.5379 33 1 4.6016 3.5091 0.6177 34 1 5.7655 2.1615 0.6032 35 1 6.7140 3.8189 2.0573 36 1 5.1581 4.0916 2.8785 37 1 7.7017 3.1985 4.5742 38 1 7.6615 0.9268 5.8813 39 1 5.7904 -0.6323 4.7400 40 1 4.8269 -0.1341 1.7933 41 1 3.5918 0.2184 3.0329 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921514952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:23 Heat of formation + Delta-G solvation = -36.526713 kcal Electronic energy + Delta-G solvation = -25573.897129 eV Core-core repulsion = 22001.920056 eV Total energy + Delta-G solvation = -3571.977072 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.29415 -38.47287 -37.69763 -37.60839 -36.96155 -34.68875 -34.02731 -31.55231 -30.78702 -29.28342 -28.48402 -26.07091 -24.94396 -24.06047 -23.26635 -21.55083 -20.30803 -19.43476 -18.77778 -18.50331 -18.27719 -18.03081 -17.17022 -16.79019 -16.39657 -15.88898 -15.39451 -14.99897 -14.79783 -14.65360 -14.58089 -14.51277 -13.90538 -13.82323 -13.62364 -13.47569 -13.35658 -13.11976 -13.07069 -13.02331 -12.95146 -12.74239 -12.70067 -12.61612 -12.31144 -12.19283 -12.12453 -11.73595 -11.60597 -10.58675 -10.33709 -9.79772 -9.47154 -8.89385 -8.16051 -6.29808 -0.43921 1.34913 1.43471 1.45306 1.54212 1.73878 2.12894 2.15120 2.42076 2.48280 3.15664 3.24736 3.51210 3.62139 3.96697 3.98318 4.11247 4.23034 4.33274 4.42344 4.45878 4.49783 4.55868 4.69439 4.75542 4.76113 4.78669 4.86648 4.97814 5.11902 5.26526 5.28690 5.40058 5.41968 5.47920 5.55782 5.76482 5.95108 6.11109 6.16934 6.31592 6.52068 6.82778 7.40720 8.92043 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.006147 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.837315 B = 4553.993161 C = 5831.563264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 N -0.994 5.994 4 C 0.260 3.740 5 C -0.537 4.537 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.928 5.928 9 Si 0.956 3.044 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.259 1.259 13 S 2.797 3.203 14 O -0.998 6.998 15 O -1.010 7.010 16 N -1.007 6.007 17 C 0.115 3.885 18 C 0.091 3.909 19 N -0.449 5.449 20 C -0.015 4.015 21 C -0.216 4.216 22 C -0.200 4.200 23 C -0.016 4.016 24 C 0.188 3.812 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.020 0.980 31 H 0.018 0.982 32 H 0.265 0.735 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.187 0.813 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.098 0.902 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.684 -5.396 12.200 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.005 4.005 3 N -0.835 5.835 4 C 0.137 3.863 5 C -0.577 4.577 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.568 5.568 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.183 1.183 13 S 2.808 3.192 14 O -0.982 6.982 15 O -0.994 6.994 16 N -0.846 5.846 17 C -0.011 4.011 18 C -0.032 4.032 19 N -0.126 5.126 20 C -0.145 4.145 21 C -0.241 4.241 22 C -0.225 4.225 23 C -0.128 4.128 24 C 0.062 3.938 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.145 0.855 36 H 0.100 0.900 37 H 0.204 0.796 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.116 0.884 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.963 -4.484 12.323 14.406 hybrid contribution 0.709 0.031 -1.111 1.318 sum 6.672 -4.453 11.212 13.786 Atomic orbital electron populations 1.22196 0.95905 1.03339 1.01277 1.21284 0.94662 0.81202 1.03400 1.57686 1.78871 1.24182 1.22716 1.18747 0.96686 0.90777 0.80112 1.21790 1.02432 1.27511 1.05926 0.90956 1.25756 1.00555 0.94679 0.97515 1.70063 1.38024 1.31131 1.17546 0.85584 0.80017 0.77487 0.78749 1.20341 1.21415 1.18281 1.01263 0.72840 0.72568 0.72554 1.93517 1.70822 1.76286 1.57587 1.93519 1.86338 1.33105 1.86445 1.58165 1.24121 1.34485 1.67846 1.21605 0.90750 0.93746 0.95016 1.22417 1.02464 0.89197 0.89110 1.44238 1.29780 1.12443 1.26130 1.22272 0.97437 1.01888 0.92896 1.21193 1.03939 0.94695 1.04255 1.20748 1.01799 1.01425 0.98521 1.20644 1.01804 0.88035 1.02350 1.20336 0.95679 0.86375 0.91365 0.93414 0.88917 0.93517 0.89955 0.89507 0.96175 0.96404 0.92616 0.88378 0.89536 0.85461 0.89998 0.79566 0.82843 0.83221 0.88388 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.02 10.24 71.98 0.74 -4.29 16 2 C 0.12 3.88 6.06 86.38 0.52 4.41 16 3 N -0.99 -39.56 2.82 -519.86 -1.47 -41.03 16 4 C 0.26 12.68 5.44 85.63 0.47 13.14 16 5 C -0.54 -26.62 9.38 25.60 0.24 -26.38 16 6 H 0.07 3.38 7.81 -2.91 -0.02 3.35 16 7 C 0.01 0.76 5.46 84.66 0.46 1.22 16 8 N -0.93 -52.08 13.29 21.45 0.28 -51.79 16 9 Si 0.96 40.32 29.54 68.60 2.03 42.35 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 13 S 2.80 109.20 6.11 -56.49 -0.34 108.85 16 14 O -1.00 -39.37 15.75 -128.00 -2.02 -41.38 16 15 O -1.01 -46.43 15.41 -128.00 -1.97 -48.41 16 16 N -1.01 -32.83 3.35 -515.00 -1.72 -34.55 16 17 C 0.11 3.51 6.36 86.35 0.55 4.06 16 18 C 0.09 2.24 7.12 86.42 0.62 2.85 16 19 N -0.45 -11.75 3.15 -508.78 -1.60 -13.35 16 20 C -0.02 -0.34 11.49 83.28 0.96 0.62 16 21 C -0.22 -4.90 10.87 22.21 0.24 -4.65 16 22 C -0.20 -4.99 10.81 22.04 0.24 -4.75 16 23 C -0.02 -0.43 6.67 41.00 0.27 -0.16 16 24 C 0.19 5.17 6.87 85.59 0.59 5.76 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 29 H 0.09 2.38 7.61 -2.39 -0.02 2.37 16 30 H 0.02 1.05 8.11 -2.39 -0.02 1.03 16 31 H 0.02 0.98 6.91 -2.39 -0.02 0.97 16 32 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 33 H 0.10 3.40 7.10 -2.39 -0.02 3.38 16 34 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 35 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 39 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.11 2.91 6.99 -2.39 -0.02 2.89 16 Total: -1.00 -66.58 349.62 0.09 -66.49 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 1.01 Total: 21.00 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.89 Total: -8.17 kcal Atomic # 7 Polarization: -136.22 SS G_CDS: -4.51 Total: -140.73 kcal Atomic # 8 Polarization: -85.80 SS G_CDS: -3.99 Total: -89.79 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Atomic # 16 Polarization: 109.20 SS G_CDS: -0.34 Total: 108.85 kcal Total: -66.58 0.09 -66.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921514952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.961 kcal (2) G-P(sol) polarization free energy of solvation -66.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds