Wall clock time and date at job start Fri Apr 10 2020 18:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99683 * 2 1 4 4 H 1.48511 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47546 * 299.99928 * 3 2 1 6 6 H 1.48506 * 109.47338 * 60.00468 * 3 2 1 7 7 C 1.38808 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99853 * 189.10163 * 7 2 1 9 9 N 1.36927 * 120.00325 * 9.10207 * 7 2 1 10 10 C 1.48157 * 127.83780 * 15.57326 * 9 7 2 11 11 C 1.54380 * 104.61805 * 140.41282 * 10 9 7 12 12 H 1.09000 * 117.61779 * 242.76212 * 11 10 9 13 13 C 1.54281 * 106.22491 * 23.29043 * 11 10 9 14 14 H 1.09003 * 121.81931 * 221.52350 * 13 11 10 15 15 C 1.48148 * 127.84301 * 195.57059 * 9 7 2 16 16 C 1.52997 * 59.72350 * 113.49072 * 13 11 10 17 17 H 1.09003 * 117.40439 * 252.33376 * 16 13 11 18 18 N 1.46503 * 117.44542 * 107.65303 * 16 13 11 19 19 C 1.34771 * 120.00073 * 135.75982 * 18 16 13 20 20 O 1.21691 * 119.99988 * 359.97438 * 19 18 16 21 21 C 1.46808 * 119.99822 * 180.02562 * 19 18 16 22 22 C 1.40412 * 126.54653 * 0.02562 * 21 19 18 23 23 N 1.30967 * 108.76975 * 179.97438 * 22 21 19 24 24 N 1.39717 * 109.48694 * 359.97438 * 23 22 21 25 25 C 1.36357 * 133.19305 * 180.02562 * 24 23 22 26 26 C 1.35297 * 119.80300 * 180.02562 * 25 24 23 27 27 N 1.33244 * 121.27689 * 359.91770 * 26 25 24 28 28 C 1.31404 * 121.07540 * 0.04177 * 27 26 25 29 29 C 1.36814 * 107.97015 * 0.02562 * 24 23 22 30 30 H 0.97002 * 119.99941 * 359.97438 * 1 2 3 31 31 H 1.08994 * 110.40464 * 21.62499 * 10 9 7 32 32 H 1.08996 * 110.50153 * 259.24969 * 10 9 7 33 33 H 1.09004 * 110.40481 * 338.37187 * 15 9 7 34 34 H 1.08999 * 110.40839 * 100.80165 * 15 9 7 35 35 H 0.96998 * 119.99377 * 315.75756 * 18 16 13 36 36 H 1.08004 * 125.61437 * 359.95412 * 22 21 19 37 37 H 1.07996 * 120.09759 * 359.96631 * 25 24 23 38 38 H 1.08001 * 119.35618 * 179.97438 * 26 25 24 39 39 H 1.08001 * 120.17923 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2079 0.1485 9 7 1.3385 -2.3806 -0.1865 10 6 -0.0342 -2.5711 -0.7103 11 6 0.0639 -3.8172 -1.6162 12 1 -0.1483 -3.6883 -2.6776 13 6 1.2896 -4.6136 -1.1227 14 1 1.9906 -5.0779 -1.8164 15 6 1.8196 -3.7545 0.0888 16 6 -0.1183 -5.1932 -0.9724 17 1 -0.5429 -5.2260 0.0310 18 7 -0.4877 -6.3061 -1.8506 19 6 -1.1384 -7.3739 -1.3478 20 8 -1.4186 -7.4138 -0.1643 21 6 -1.5080 -8.4894 -2.2278 22 6 -1.2533 -8.5877 -3.6051 23 7 -1.7317 -9.7259 -4.0420 24 7 -2.3174 -10.4228 -2.9821 25 6 -2.9461 -11.6295 -2.8926 26 6 -3.4235 -12.0522 -1.6993 27 7 -3.2913 -11.3114 -0.5997 28 6 -2.6922 -10.1425 -0.6373 29 6 -2.1836 -9.6631 -1.8522 30 1 -0.4850 0.8401 0.0004 31 1 -0.3433 -1.7022 -1.2912 32 1 -0.7332 -2.7492 0.1068 33 1 2.9091 -3.7784 0.1107 34 1 1.4115 -4.1182 1.0318 35 1 -0.2640 -6.2743 -2.7939 36 1 -0.7465 -7.8466 -4.2055 37 1 -3.0634 -12.2455 -3.7718 38 1 -3.9205 -13.0089 -1.6368 39 1 -2.5926 -9.5542 0.2629 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960295912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:44 Heat of formation + Delta-G solvation = 154.740135 kcal Electronic energy + Delta-G solvation = -24406.730922 eV Core-core repulsion = 20739.896602 eV Total energy + Delta-G solvation = -3666.834320 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.91148 -39.71863 -38.73292 -38.01417 -34.48052 -34.06162 -32.64879 -31.76510 -30.49629 -29.46894 -27.01057 -25.78031 -25.25022 -24.35973 -23.00791 -21.67543 -20.54199 -20.21687 -19.29962 -18.77944 -17.84260 -17.09203 -16.77178 -16.52951 -16.25298 -15.76520 -15.44918 -14.72849 -14.55993 -14.29954 -13.93122 -13.61434 -13.40606 -13.38106 -13.20953 -12.72975 -12.22235 -11.67363 -11.58092 -11.46250 -11.27179 -10.97804 -10.84882 -10.43733 -10.34916 -10.29801 -10.19917 -10.13446 -9.92405 -9.73079 -9.20996 -8.75147 -8.47981 -8.19002 -6.86937 -5.79956 -3.14109 -0.05762 0.36545 1.44192 1.70423 2.81574 3.07154 3.32607 3.38108 3.44118 3.46596 3.63064 3.74265 3.80555 4.30205 4.35899 4.46892 4.48218 4.57650 4.87313 4.96553 5.08997 5.17791 5.37639 5.40565 5.57734 5.68459 5.74866 5.74930 5.87911 5.97449 6.16119 6.24720 6.52710 6.69897 6.77865 6.82741 6.89833 7.13811 7.35529 7.53799 7.58239 7.72044 8.20398 8.27691 9.10879 9.73619 10.50577 11.34477 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.040862 B = 0.002335 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.074130 B =11988.296962 C =12236.864425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.180 4.180 12 H 0.101 0.899 13 C -0.185 4.185 14 H 0.107 0.893 15 C 0.157 3.843 16 C 0.097 3.903 17 H 0.134 0.866 18 N -0.692 5.692 19 C 0.598 3.402 20 O -0.543 6.543 21 C -0.269 4.269 22 C 0.114 3.886 23 N -0.303 5.303 24 N -0.249 5.249 25 C 0.062 3.938 26 C 0.029 3.971 27 N -0.445 5.445 28 C 0.171 3.829 29 C 0.094 3.906 30 H 0.254 0.746 31 H 0.091 0.909 32 H 0.027 0.973 33 H 0.050 0.950 34 H 0.031 0.969 35 H 0.396 0.604 36 H 0.205 0.795 37 H 0.182 0.818 38 H 0.187 0.813 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 -23.408 -8.526 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.201 4.201 12 H 0.119 0.881 13 C -0.207 4.207 14 H 0.125 0.875 15 C 0.030 3.970 16 C -0.009 4.009 17 H 0.152 0.848 18 N -0.339 5.339 19 C 0.386 3.614 20 O -0.421 6.421 21 C -0.287 4.287 22 C -0.064 4.064 23 N -0.126 5.126 24 N -0.016 5.016 25 C -0.067 4.067 26 C -0.113 4.113 27 N -0.156 5.156 28 C -0.008 4.008 29 C -0.029 4.029 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.230 0.770 36 H 0.222 0.778 37 H 0.199 0.801 38 H 0.204 0.796 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.385 -24.328 -8.094 26.422 hybrid contribution 0.979 1.578 -1.007 2.113 sum -5.406 -22.750 -9.101 25.092 Atomic orbital electron populations 1.69904 1.05049 1.25336 1.55796 1.24903 0.95653 0.97995 1.01776 0.86042 0.78869 0.83527 0.77271 1.20366 1.21645 1.21677 1.19030 0.90850 0.82244 1.43270 0.90467 1.45131 1.13342 1.00014 1.73147 1.21067 0.86956 0.92406 0.93693 1.24640 1.02411 0.92500 1.00549 0.88092 1.25106 0.90395 1.02170 1.03031 0.87547 1.21702 0.97163 0.85623 0.92485 1.21898 0.98426 0.84859 0.95704 0.84849 1.45101 1.58382 1.18428 1.12002 1.16778 0.77329 0.80740 0.86585 1.90787 1.55354 1.80019 1.15930 1.19841 1.16085 0.98274 0.94490 1.24251 0.94481 0.94253 0.93456 1.77698 1.20093 1.08307 1.06515 1.46219 1.34662 1.13163 1.07541 1.22670 0.96465 0.85278 1.02290 1.22491 1.00956 1.01550 0.86308 1.68305 1.12383 1.04910 1.29988 1.23432 0.90065 0.91363 0.95950 1.20399 0.99949 0.93062 0.89505 0.93575 0.89107 0.95523 0.93148 0.95080 0.76978 0.77843 0.80058 0.79604 0.78432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.61 10.86 55.49 0.60 -26.01 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 3 Si 0.91 21.77 29.56 -169.99 -5.03 16.74 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.23 -6.23 10.35 -15.07 -0.16 -6.38 16 8 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 9 N -0.59 -15.03 3.38 -166.73 -0.56 -15.59 16 10 C 0.18 4.38 5.70 -2.41 -0.01 4.36 16 11 C -0.18 -3.28 6.98 -89.23 -0.62 -3.90 16 12 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 13 C -0.19 -3.19 7.34 -87.38 -0.64 -3.83 16 14 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 15 C 0.16 3.28 7.10 -0.57 0.00 3.27 16 16 C 0.10 1.57 5.92 -67.93 -0.40 1.17 16 17 H 0.13 2.47 7.40 -51.93 -0.38 2.09 16 18 N -0.69 -8.90 5.55 -55.07 -0.31 -9.21 16 19 C 0.60 8.32 7.79 -12.80 -0.10 8.22 16 20 O -0.54 -9.27 15.37 5.20 0.08 -9.19 16 21 C -0.27 -3.11 6.16 -104.75 -0.65 -3.75 16 22 C 0.11 1.07 11.44 -17.10 -0.20 0.87 16 23 N -0.30 -3.17 12.60 30.76 0.39 -2.78 16 24 N -0.25 -2.49 3.91 -10.50 -0.04 -2.53 16 25 C 0.06 0.41 11.24 -16.59 -0.19 0.22 16 26 C 0.03 0.18 11.07 -17.99 -0.20 -0.02 16 27 N -0.44 -4.19 10.44 -13.26 -0.14 -4.33 16 28 C 0.17 1.80 10.98 -17.02 -0.19 1.62 16 29 C 0.09 1.06 6.77 -84.06 -0.57 0.49 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.09 2.40 6.51 -51.93 -0.34 2.06 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 3.82 7.75 -40.82 -0.32 3.50 16 36 H 0.21 1.11 7.46 -52.48 -0.39 0.72 16 37 H 0.18 0.55 8.06 -52.49 -0.42 0.12 16 38 H 0.19 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.20 2.07 7.20 -52.49 -0.38 1.70 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -34.46 336.55 -8.26 -42.72 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.31 Total: 3.02 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -4.02 Total: 2.07 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.06 Total: -60.45 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.46 -8.26 -42.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960295912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.462 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds