Wall clock time and date at job start Fri Apr 10 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48504 * 109.47302 * 239.99832 * 3 2 1 5 5 H 1.48499 * 109.47436 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47063 * 120.00133 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09006 * 117.40754 * 252.33884 * 16 13 11 18 18 N 1.46503 * 117.44579 * 107.64647 * 16 13 11 19 19 C 1.34775 * 119.99929 * 135.75651 * 18 16 13 20 20 O 1.21705 * 119.99986 * 0.02562 * 19 18 16 21 21 C 1.46671 * 119.99740 * 180.02562 * 19 18 16 22 22 C 1.40332 * 126.56233 * 359.68824 * 21 19 18 23 23 N 1.31006 * 108.77878 * 179.81656 * 22 21 19 24 24 N 1.39897 * 109.56000 * 0.45619 * 23 22 21 25 25 N 1.40014 * 132.52037 * 179.71804 * 24 23 22 26 26 C 1.30843 * 120.65975 * 179.97438 * 25 24 23 27 27 C 1.39737 * 120.97323 * 0.02562 * 26 25 24 28 28 C 1.36559 * 119.94007 * 359.97438 * 27 26 25 29 29 C 1.36759 * 107.87169 * 359.71177 * 24 23 22 30 30 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 31 31 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 32 32 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 33 33 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 34 34 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 35 35 H 0.96998 * 119.99589 * 315.76144 * 18 16 13 36 36 H 1.07994 * 125.60817 * 0.02562 * 22 21 19 37 37 H 1.07996 * 119.51472 * 180.02562 * 26 25 24 38 38 H 1.08003 * 120.02883 * 179.97438 * 27 26 25 39 39 H 1.08003 * 120.44397 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3521 -5.2958 0.7147 18 7 -0.9202 -6.2772 -1.1358 19 6 -1.3392 -7.3937 -0.5078 20 8 -1.1992 -7.5036 0.6962 21 6 -1.9640 -8.4762 -1.2753 22 6 -2.1981 -8.4927 -2.6588 23 7 -2.7692 -9.6282 -2.9764 24 7 -2.9459 -10.4019 -1.8243 25 7 -3.5010 -11.6696 -1.6116 26 6 -3.5488 -12.1840 -0.4095 27 6 -3.0491 -11.4847 0.6923 28 6 -2.5007 -10.2458 0.5217 29 6 -2.4493 -9.6952 -0.7639 30 1 -0.4850 0.8400 0.0004 31 1 -0.7146 -1.7148 -0.3630 32 1 -0.5197 -2.8483 1.0094 33 1 1.8513 -4.1847 1.0018 34 1 2.9071 -3.7537 -0.3789 35 1 -1.0321 -6.1894 -2.0953 36 1 -1.9457 -7.7012 -3.3488 37 1 -3.9807 -13.1634 -0.2667 38 1 -3.0967 -11.9236 1.6779 39 1 -2.1117 -9.6983 1.3675 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960304959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:47 Heat of formation + Delta-G solvation = 179.179227 kcal Electronic energy + Delta-G solvation = -24388.630419 eV Core-core repulsion = 20722.855858 eV Total energy + Delta-G solvation = -3665.774561 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -42.22681 -39.62282 -38.40443 -37.88983 -34.39297 -33.60772 -32.70539 -31.55412 -30.44553 -29.49458 -27.03769 -25.77804 -25.19175 -24.10968 -22.84214 -21.58202 -20.47942 -20.06388 -19.17038 -18.50607 -17.82217 -17.04127 -16.82719 -16.33599 -16.26491 -15.97933 -14.72326 -14.59520 -14.53599 -14.26176 -13.86543 -13.57697 -13.23165 -13.00785 -12.95094 -12.70846 -12.17171 -11.84143 -11.50461 -11.32933 -11.22574 -11.09549 -10.88451 -10.82754 -10.34451 -10.21065 -10.11352 -10.02396 -9.91199 -9.66185 -9.17723 -8.80433 -8.64013 -8.24912 -6.91831 -5.65815 -3.09860 -0.20588 0.55204 0.96614 1.77736 2.55543 3.12268 3.32266 3.40748 3.44652 3.45971 3.74731 3.92644 4.07287 4.12382 4.37704 4.45566 4.47970 4.69397 4.80641 4.99479 5.19670 5.37330 5.40032 5.44526 5.48257 5.58949 5.62068 5.80096 5.84855 5.92871 6.19293 6.28384 6.56229 6.68823 6.83836 6.87322 6.90606 6.97779 7.33250 7.54472 7.60011 7.80175 8.28161 8.28590 9.12858 9.77024 10.48290 11.37508 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.041606 B = 0.002329 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.815265 B =12017.167080 C =12259.509150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.918 3.082 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.214 4.214 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.156 3.844 11 C -0.171 4.171 12 H 0.102 0.898 13 C -0.185 4.185 14 H 0.102 0.898 15 C 0.160 3.840 16 C 0.095 3.905 17 H 0.132 0.868 18 N -0.690 5.690 19 C 0.599 3.401 20 O -0.547 6.547 21 C -0.264 4.264 22 C 0.096 3.904 23 N -0.253 5.253 24 N -0.173 5.173 25 N -0.217 5.217 26 C 0.118 3.882 27 C -0.160 4.160 28 C -0.023 4.023 29 C 0.106 3.894 30 H 0.254 0.746 31 H 0.137 0.863 32 H 0.018 0.982 33 H 0.027 0.973 34 H 0.051 0.949 35 H 0.398 0.602 36 H 0.208 0.792 37 H 0.208 0.792 38 H 0.161 0.839 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.458 -23.583 -1.493 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.210 4.210 3 Si 0.749 3.251 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.342 4.342 8 H 0.097 0.903 9 N -0.325 5.325 10 C 0.032 3.968 11 C -0.192 4.192 12 H 0.120 0.880 13 C -0.207 4.207 14 H 0.120 0.880 15 C 0.033 3.967 16 C -0.011 4.011 17 H 0.149 0.851 18 N -0.338 5.338 19 C 0.386 3.614 20 O -0.426 6.426 21 C -0.280 4.280 22 C -0.085 4.085 23 N -0.077 5.077 24 N -0.040 5.040 25 N -0.030 5.030 26 C -0.074 4.074 27 C -0.185 4.185 28 C -0.051 4.051 29 C -0.020 4.020 30 H 0.065 0.935 31 H 0.154 0.846 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.232 0.768 36 H 0.225 0.775 37 H 0.224 0.776 38 H 0.179 0.821 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.106 -24.292 -2.658 25.747 hybrid contribution 0.953 1.451 0.712 1.876 sum -7.153 -22.842 -1.945 24.014 Atomic orbital electron populations 1.69472 1.04953 1.24881 1.57918 1.24756 0.95706 0.97699 1.02791 0.86090 0.78337 0.82832 0.77867 1.21212 1.21557 1.21222 1.19065 0.90362 0.82188 1.42627 0.90307 1.46126 1.01348 0.99381 1.85674 1.22560 0.85385 0.95202 0.93703 1.24650 0.99787 0.91754 1.03026 0.87995 1.24393 0.91159 1.02735 1.02417 0.87961 1.21071 0.94801 0.85796 0.94989 1.21921 0.97522 0.85325 0.96284 0.85063 1.45114 1.60831 1.16791 1.11029 1.16788 0.77346 0.80746 0.86501 1.90768 1.57419 1.80342 1.14054 1.19864 1.17173 0.97186 0.93817 1.24336 0.94252 0.95186 0.94702 1.77712 1.24754 1.03948 1.01331 1.50952 1.37466 1.10002 1.05571 1.75887 1.13172 0.91280 1.22626 1.24332 0.94539 1.00621 0.87903 1.21766 1.00150 0.95354 1.01273 1.21252 0.93702 0.94521 0.95599 1.19763 0.98338 0.93513 0.90385 0.93526 0.84621 0.96399 0.95539 0.93058 0.76840 0.77514 0.77583 0.82105 0.80984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.12 55.49 0.56 -25.95 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.92 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.21 -5.92 10.42 -15.06 -0.16 -6.08 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.33 3.46 -165.73 -0.57 -15.91 16 10 C 0.16 3.72 6.43 -0.29 0.00 3.72 16 11 C -0.17 -3.22 6.96 -89.22 -0.62 -3.85 16 12 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 13 C -0.19 -3.31 7.06 -89.24 -0.63 -3.94 16 14 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 15 C 0.16 3.37 7.05 -2.43 -0.02 3.35 16 16 C 0.10 1.59 5.97 -67.93 -0.41 1.18 16 17 H 0.13 2.45 7.40 -51.93 -0.38 2.07 16 18 N -0.69 -9.30 5.55 -55.11 -0.31 -9.60 16 19 C 0.60 8.64 7.79 -12.86 -0.10 8.54 16 20 O -0.55 -9.47 15.34 5.18 0.08 -9.39 16 21 C -0.26 -3.29 6.16 -104.73 -0.65 -3.93 16 22 C 0.10 1.02 11.44 -17.12 -0.20 0.83 16 23 N -0.25 -3.25 12.61 30.75 0.39 -2.86 16 24 N -0.17 -2.17 5.25 32.44 0.17 -2.00 16 25 N -0.22 -2.21 11.96 30.60 0.37 -1.85 16 26 C 0.12 0.65 11.28 -17.41 -0.20 0.45 16 27 C -0.16 -0.85 10.04 -39.63 -0.40 -1.25 16 28 C -0.02 -0.21 9.75 -39.55 -0.39 -0.59 16 29 C 0.11 1.28 6.83 -84.05 -0.57 0.70 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.14 3.63 5.34 -51.93 -0.28 3.35 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.40 4.13 7.74 -40.82 -0.32 3.82 16 36 H 0.21 1.35 7.46 -52.49 -0.39 0.95 16 37 H 0.21 0.10 8.06 -52.49 -0.42 -0.33 16 38 H 0.16 0.24 8.06 -52.48 -0.42 -0.19 16 39 H 0.17 1.55 7.18 -52.48 -0.38 1.17 16 LS Contribution 335.92 15.07 5.06 5.06 Total: -1.00 -35.64 335.92 -7.95 -43.59 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.25 Total: 3.42 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -4.42 Total: -1.36 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.61 Total: -58.17 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.64 -7.95 -43.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960304959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.765 kcal (2) G-P(sol) polarization free energy of solvation -35.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds