Wall clock time and date at job start Fri Apr 10 2020 18:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48504 * 109.47302 * 239.99832 * 3 2 1 5 5 H 1.48499 * 109.47436 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47063 * 120.00133 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09006 * 117.40754 * 252.33884 * 16 13 11 18 18 N 1.46503 * 117.44579 * 107.64647 * 16 13 11 19 19 C 1.34775 * 119.99929 * 135.75651 * 18 16 13 20 20 O 1.21705 * 119.99986 * 0.02562 * 19 18 16 21 21 C 1.46671 * 119.99740 * 180.02562 * 19 18 16 22 22 C 1.40332 * 126.56233 * 359.68824 * 21 19 18 23 23 N 1.31006 * 108.77878 * 179.81656 * 22 21 19 24 24 N 1.39897 * 109.56000 * 0.45619 * 23 22 21 25 25 N 1.40014 * 132.52037 * 179.71804 * 24 23 22 26 26 C 1.30843 * 120.65975 * 179.97438 * 25 24 23 27 27 C 1.39737 * 120.97323 * 0.02562 * 26 25 24 28 28 C 1.36559 * 119.94007 * 359.97438 * 27 26 25 29 29 C 1.36759 * 107.87169 * 359.71177 * 24 23 22 30 30 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 31 31 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 32 32 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 33 33 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 34 34 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 35 35 H 0.96998 * 119.99589 * 315.76144 * 18 16 13 36 36 H 1.07994 * 125.60817 * 0.02562 * 22 21 19 37 37 H 1.07996 * 119.51472 * 180.02562 * 26 25 24 38 38 H 1.08003 * 120.02883 * 179.97438 * 27 26 25 39 39 H 1.08003 * 120.44397 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3521 -5.2958 0.7147 18 7 -0.9202 -6.2772 -1.1358 19 6 -1.3392 -7.3937 -0.5078 20 8 -1.1992 -7.5036 0.6962 21 6 -1.9640 -8.4762 -1.2753 22 6 -2.1981 -8.4927 -2.6588 23 7 -2.7692 -9.6282 -2.9764 24 7 -2.9459 -10.4019 -1.8243 25 7 -3.5010 -11.6696 -1.6116 26 6 -3.5488 -12.1840 -0.4095 27 6 -3.0491 -11.4847 0.6923 28 6 -2.5007 -10.2458 0.5217 29 6 -2.4493 -9.6952 -0.7639 30 1 -0.4850 0.8400 0.0004 31 1 -0.7146 -1.7148 -0.3630 32 1 -0.5197 -2.8483 1.0094 33 1 1.8513 -4.1847 1.0018 34 1 2.9071 -3.7537 -0.3789 35 1 -1.0321 -6.1894 -2.0953 36 1 -1.9457 -7.7012 -3.3488 37 1 -3.9807 -13.1634 -0.2667 38 1 -3.0967 -11.9236 1.6779 39 1 -2.1117 -9.6983 1.3675 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960304959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:46 Heat of formation + Delta-G solvation = 153.310316 kcal Electronic energy + Delta-G solvation = -24389.752179 eV Core-core repulsion = 20722.855858 eV Total energy + Delta-G solvation = -3666.896321 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.98871 -40.89729 -39.57323 -38.84397 -35.96656 -34.35948 -34.26008 -32.42272 -31.99091 -30.50477 -28.78987 -27.60349 -25.84363 -25.10601 -23.72241 -23.10107 -21.92385 -21.24605 -20.75541 -19.33829 -18.88848 -18.50366 -17.84244 -17.36712 -17.06426 -16.87723 -16.62518 -15.68857 -15.66704 -15.32610 -15.19222 -14.80724 -14.55623 -14.41866 -13.73183 -13.65991 -13.61538 -13.20824 -13.04095 -12.98584 -12.67701 -12.63817 -12.12826 -11.97728 -11.96596 -11.68823 -11.61608 -11.55234 -11.09407 -10.91572 -10.86042 -10.63659 -9.77285 -9.28130 -8.94128 -7.73669 -5.20912 -0.85152 -0.08592 0.27871 0.91170 1.49557 1.52739 1.59026 1.90919 1.98048 2.31407 2.51798 2.94304 3.09441 3.29370 3.35245 3.40877 3.57024 3.59754 3.80522 3.89739 3.95868 4.04638 4.18526 4.22372 4.28914 4.41470 4.59701 4.80088 4.85813 4.91101 4.96899 5.02349 5.05995 5.15144 5.31827 5.43021 5.48286 5.56518 5.80568 6.11286 6.28808 6.30798 6.54574 7.04611 7.20260 7.71744 8.46733 9.27581 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.041606 B = 0.002329 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.815265 B =12017.167080 C =12259.509150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.071 4.071 3 Si 0.984 3.016 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.084 0.916 9 N -0.625 5.625 10 C 0.153 3.847 11 C -0.174 4.174 12 H 0.121 0.879 13 C -0.171 4.171 14 H 0.131 0.869 15 C 0.153 3.847 16 C 0.121 3.879 17 H 0.111 0.889 18 N -0.678 5.678 19 C 0.603 3.397 20 O -0.583 6.583 21 C -0.297 4.297 22 C 0.111 3.889 23 N -0.291 5.291 24 N -0.188 5.188 25 N -0.256 5.256 26 C 0.135 3.865 27 C -0.117 4.117 28 C -0.065 4.065 29 C 0.103 3.897 30 H 0.249 0.751 31 H 0.108 0.892 32 H -0.002 1.002 33 H 0.024 0.976 34 H 0.061 0.939 35 H 0.416 0.584 36 H 0.242 0.758 37 H 0.264 0.736 38 H 0.210 0.790 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 -26.230 -1.823 27.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.263 4.263 3 Si 0.812 3.188 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.102 0.898 9 N -0.350 5.350 10 C 0.029 3.971 11 C -0.195 4.195 12 H 0.139 0.861 13 C -0.192 4.192 14 H 0.149 0.851 15 C 0.027 3.973 16 C 0.014 3.986 17 H 0.128 0.872 18 N -0.327 5.327 19 C 0.392 3.608 20 O -0.464 6.464 21 C -0.314 4.314 22 C -0.070 4.070 23 N -0.115 5.115 24 N -0.053 5.053 25 N -0.069 5.069 26 C -0.056 4.056 27 C -0.142 4.142 28 C -0.093 4.093 29 C -0.025 4.025 30 H 0.058 0.942 31 H 0.125 0.875 32 H 0.016 0.984 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.253 0.747 36 H 0.258 0.742 37 H 0.279 0.721 38 H 0.227 0.773 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.252 -26.985 -3.032 28.381 hybrid contribution 0.918 2.013 0.988 2.424 sum -7.334 -24.972 -2.044 26.107 Atomic orbital electron populations 1.69739 1.06203 1.25070 1.58916 1.25603 0.96625 1.00889 1.03135 0.85065 0.77029 0.78587 0.78103 1.20228 1.21988 1.20669 1.19450 0.90946 0.83405 1.42104 0.89827 1.46424 1.02159 1.00476 1.85952 1.22304 0.84790 0.96296 0.93706 1.24325 1.01409 0.91044 1.02705 0.86142 1.24314 0.90195 1.02119 1.02579 0.85081 1.21203 0.95955 0.84358 0.95737 1.21425 0.96622 0.84994 0.95547 0.87170 1.44867 1.60421 1.15682 1.11718 1.17028 0.76628 0.80982 0.86132 1.90743 1.58933 1.81058 1.15671 1.19664 1.19780 0.97361 0.94577 1.24830 0.92510 0.95174 0.94447 1.77597 1.26429 1.04901 1.02617 1.51125 1.37944 1.10849 1.05393 1.75940 1.14782 0.90784 1.25357 1.25400 0.92059 1.01843 0.86341 1.22381 0.95396 0.93058 1.03334 1.21402 0.96856 0.96649 0.94387 1.20180 0.97350 0.93439 0.91495 0.94156 0.87453 0.98411 0.95857 0.92075 0.74714 0.74238 0.72099 0.77271 0.81622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.17 10.12 21.65 0.22 -55.95 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 3 Si 0.98 45.51 29.55 68.60 2.03 47.53 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.23 -12.91 10.42 84.03 0.88 -12.03 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.63 -32.50 3.46 -678.24 -2.35 -34.84 16 10 C 0.15 7.59 6.43 85.80 0.55 8.14 16 11 C -0.17 -6.51 6.96 -9.89 -0.07 -6.58 16 12 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 13 C -0.17 -5.88 7.06 -9.90 -0.07 -5.95 16 14 H 0.13 3.81 8.14 -2.38 -0.02 3.79 16 15 C 0.15 6.42 7.05 86.52 0.61 7.03 16 16 C 0.12 3.99 5.97 44.99 0.27 4.26 16 17 H 0.11 4.21 7.40 -2.38 -0.02 4.19 16 18 N -0.68 -17.53 5.55 -446.50 -2.48 -20.01 16 19 C 0.60 17.32 7.79 86.45 0.67 18.00 16 20 O -0.58 -20.58 15.34 -4.37 -0.07 -20.64 16 21 C -0.30 -7.35 6.16 -19.93 -0.12 -7.48 16 22 C 0.11 2.29 11.44 85.33 0.98 3.27 16 23 N -0.29 -7.39 12.61 -56.63 -0.71 -8.11 16 24 N -0.19 -4.60 5.25 -51.28 -0.27 -4.86 16 25 N -0.26 -4.71 11.96 -57.11 -0.68 -5.39 16 26 C 0.13 0.92 11.28 85.20 0.96 1.89 16 27 C -0.12 -0.78 10.04 22.24 0.22 -0.56 16 28 C -0.07 -1.10 9.75 22.29 0.22 -0.89 16 29 C 0.10 2.44 6.83 39.42 0.27 2.71 16 30 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.11 6.00 5.34 -2.39 -0.01 5.98 16 32 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.42 7.77 7.74 -92.71 -0.72 7.05 16 36 H 0.24 2.68 7.46 -2.91 -0.02 2.66 16 37 H 0.26 -1.38 8.06 -2.91 -0.02 -1.40 16 38 H 0.21 -0.65 8.06 -2.91 -0.02 -0.68 16 39 H 0.17 2.96 7.18 -2.91 -0.02 2.94 16 Total: -1.00 -82.52 335.92 1.91 -80.62 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.39 Total: 13.37 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 5.83 Total: 8.29 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -6.28 Total: -129.16 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.07 Total: -20.64 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -82.52 1.91 -80.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960304959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.926 kcal (2) G-P(sol) polarization free energy of solvation -82.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds