Wall clock time and date at job start Fri Apr 10 2020 18:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99875 * 2 1 4 4 H 1.48506 * 109.47458 * 273.98136 * 3 2 1 5 5 H 1.48500 * 109.47402 * 33.97851 * 3 2 1 6 6 H 1.48500 * 109.47186 * 153.98158 * 3 2 1 7 7 C 1.38806 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 188.84464 * 7 2 1 9 9 N 1.36934 * 120.00292 * 8.84322 * 7 2 1 10 10 C 1.51835 * 127.60929 * 14.12360 * 9 7 2 11 11 C 1.54393 * 102.86455 * 140.54838 * 10 9 7 12 12 H 1.08998 * 117.61774 * 243.60090 * 11 10 9 13 13 C 1.54286 * 106.22147 * 24.12147 * 11 10 9 14 14 H 1.09000 * 121.81787 * 221.53025 * 13 11 10 15 15 C 1.48146 * 127.84066 * 194.47117 * 9 7 2 16 16 C 1.52993 * 59.72336 * 113.48760 * 13 11 10 17 17 H 1.08998 * 117.44477 * 252.35041 * 16 13 11 18 18 N 1.46497 * 117.40813 * 107.66056 * 16 13 11 19 19 C 1.34777 * 119.99971 * 135.77345 * 18 16 13 20 20 O 1.21710 * 120.00277 * 359.97438 * 19 18 16 21 21 C 1.46586 * 120.00069 * 180.02562 * 19 18 16 22 22 C 1.40641 * 126.54072 * 0.02562 * 21 19 18 23 23 N 1.30696 * 108.73292 * 180.02562 * 22 21 19 24 24 N 1.39912 * 109.51328 * 0.02562 * 23 22 21 25 25 C 1.36312 * 132.15759 * 180.02562 * 24 23 22 26 26 C 1.35749 * 119.15977 * 179.97438 * 25 24 23 27 27 C 1.39966 * 119.35298 * 359.97438 * 26 25 24 28 28 N 1.31504 * 120.10884 * 0.02812 * 27 26 25 29 29 C 1.33386 * 120.84837 * 359.64377 * 28 27 26 30 30 H 0.97007 * 119.99966 * 359.97438 * 1 2 3 31 31 H 1.08997 * 112.25961 * 21.87091 * 10 9 7 32 32 H 1.09000 * 110.21894 * 258.27750 * 10 9 7 33 33 H 1.09000 * 110.41245 * 100.79653 * 15 9 7 34 34 H 1.09005 * 110.40531 * 338.36077 * 15 9 7 35 35 H 0.96996 * 120.00380 * 315.77865 * 18 16 13 36 36 H 1.08000 * 125.63277 * 0.02730 * 22 21 19 37 37 H 1.08007 * 120.42209 * 359.97438 * 25 24 23 38 38 H 1.08004 * 120.32679 * 180.02562 * 26 25 24 39 39 H 1.07994 * 119.95081 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4135 2.0951 -1.3967 5 1 1.4922 2.6269 0.7825 6 1 3.5873 1.4174 0.6142 7 6 2.0102 -1.2021 -0.0005 8 1 3.0806 -1.2078 0.1433 9 7 1.3378 -2.3809 -0.1834 10 6 -0.0823 -2.5692 -0.6865 11 6 0.0376 -3.8094 -1.5982 12 1 -0.1715 -3.6782 -2.6598 13 6 1.2724 -4.5907 -1.1029 14 1 1.9831 -5.0414 -1.7956 15 6 1.8279 -3.7556 0.0710 16 6 -0.1278 -5.1909 -0.9618 17 1 -0.5570 -5.2348 0.0392 18 7 -0.4764 -6.3047 -1.8473 19 6 -1.1140 -7.3844 -1.3531 20 8 -1.3998 -7.4343 -0.1710 21 6 -1.4623 -8.4991 -2.2389 22 6 -1.1986 -8.5870 -3.6176 23 7 -1.6584 -9.7272 -4.0611 24 7 -2.2418 -10.4378 -3.0064 25 6 -2.8508 -11.6560 -2.9504 26 6 -3.3332 -12.1003 -1.7618 27 6 -3.1942 -11.2994 -0.6224 28 7 -2.6020 -10.1283 -0.7075 29 6 -2.1200 -9.6885 -1.8708 30 1 -0.4850 0.8401 0.0004 31 1 -0.4353 -1.7105 -1.2575 32 1 -0.7534 -2.7740 0.1476 33 1 1.4402 -4.1280 1.0192 34 1 2.9177 -3.7768 0.0702 35 1 -0.2482 -6.2653 -2.7892 36 1 -0.6986 -7.8364 -4.2117 37 1 -2.9483 -12.2602 -3.8404 38 1 -3.8187 -13.0629 -1.6958 39 1 -3.5740 -11.6435 0.3281 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961428575.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:04 Heat of formation + Delta-G solvation = 159.117420 kcal Electronic energy + Delta-G solvation = -24403.211781 eV Core-core repulsion = 20736.567275 eV Total energy + Delta-G solvation = -3666.644506 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.82201 -39.54684 -38.50708 -37.82126 -34.43263 -34.22470 -32.57041 -31.57395 -30.37041 -29.43578 -27.05214 -25.71072 -25.34687 -24.25593 -22.88608 -21.63436 -20.38364 -20.15864 -19.12907 -18.68247 -17.78350 -17.18764 -16.77024 -16.57265 -16.19922 -15.94100 -14.74090 -14.64579 -14.34417 -14.13465 -13.98943 -13.51877 -13.38139 -13.09843 -13.05250 -12.64622 -12.08543 -11.91206 -11.73566 -11.38071 -11.36582 -10.94589 -10.78869 -10.36032 -10.20819 -10.10816 -10.08584 -10.06401 -9.70555 -9.61250 -9.11431 -8.69042 -8.45965 -8.12757 -6.81352 -5.72828 -3.05751 -0.02557 0.34946 1.49354 1.82074 2.81361 3.21196 3.41233 3.42582 3.47616 3.49897 3.52958 3.69266 3.87161 4.34926 4.44032 4.51340 4.52652 4.69909 4.79382 4.95053 5.22693 5.26005 5.43392 5.46669 5.47891 5.63347 5.77335 5.88563 5.96507 5.98231 6.23981 6.35885 6.61217 6.76702 6.86616 6.94533 6.98253 7.22120 7.39224 7.58086 7.74786 7.77429 8.19665 8.51927 9.12577 9.78966 10.56217 11.42084 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.041242 B = 0.002341 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.751427 B =11959.882751 C =12205.643153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.186 3.814 11 C -0.179 4.179 12 H 0.101 0.899 13 C -0.184 4.184 14 H 0.102 0.898 15 C 0.159 3.841 16 C 0.102 3.898 17 H 0.132 0.868 18 N -0.697 5.697 19 C 0.596 3.404 20 O -0.526 6.526 21 C -0.282 4.282 22 C 0.129 3.871 23 N -0.311 5.311 24 N -0.308 5.308 25 C 0.164 3.836 26 C -0.222 4.222 27 C 0.183 3.817 28 N -0.438 5.438 29 C 0.317 3.683 30 H 0.253 0.747 31 H 0.094 0.906 32 H 0.030 0.970 33 H 0.027 0.973 34 H 0.051 0.949 35 H 0.394 0.606 36 H 0.206 0.794 37 H 0.183 0.817 38 H 0.172 0.828 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.241 -26.767 -8.701 29.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.325 5.325 10 C 0.062 3.938 11 C -0.200 4.200 12 H 0.119 0.881 13 C -0.205 4.205 14 H 0.120 0.880 15 C 0.032 3.968 16 C -0.004 4.004 17 H 0.150 0.850 18 N -0.346 5.346 19 C 0.383 3.617 20 O -0.402 6.402 21 C -0.298 4.298 22 C -0.052 4.052 23 N -0.133 5.133 24 N -0.077 5.077 25 C 0.028 3.972 26 C -0.246 4.246 27 C 0.001 3.999 28 N -0.149 5.149 29 C 0.086 3.914 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.228 0.772 36 H 0.222 0.778 37 H 0.200 0.800 38 H 0.189 0.811 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.348 -26.488 -8.264 28.704 hybrid contribution 0.539 0.697 -0.758 1.163 sum -6.809 -25.791 -9.023 28.159 Atomic orbital electron populations 1.69888 1.05003 1.25247 1.56282 1.24857 0.95645 0.97844 1.02187 0.86099 0.78692 0.83472 0.77467 1.21662 1.21743 1.20583 1.19031 0.90745 0.82486 1.42770 0.90561 1.46070 1.11659 0.99724 1.75001 1.21729 0.86240 0.92236 0.93602 1.24600 1.02332 0.92549 1.00555 0.88081 1.24390 0.90518 1.02520 1.03110 0.87962 1.21053 0.96923 0.85736 0.93047 1.21821 0.98250 0.84692 0.95637 0.85017 1.45093 1.59779 1.17826 1.11855 1.16687 0.77535 0.80704 0.86760 1.90849 1.53698 1.79845 1.15846 1.19493 1.18325 0.97563 0.94454 1.24178 0.93736 0.94246 0.93076 1.77602 1.20979 1.07965 1.06777 1.47056 1.37431 1.13806 1.09417 1.22155 0.90457 0.83477 1.01078 1.21970 1.06302 1.04347 0.92003 1.23685 0.89192 0.87545 0.99500 1.68383 1.10441 1.14812 1.21230 1.20411 0.96256 0.92414 0.82354 0.93640 0.88799 0.95227 0.95549 0.93067 0.77206 0.77774 0.79951 0.81084 0.79791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 10.79 55.49 0.60 -26.63 16 2 C -0.01 -0.25 5.43 -17.43 -0.09 -0.34 16 3 Si 0.91 22.25 29.56 -169.99 -5.03 17.22 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.22 -6.28 10.37 -15.06 -0.16 -6.44 16 8 H 0.08 2.09 7.84 -52.49 -0.41 1.67 16 9 N -0.60 -15.69 3.45 -165.69 -0.57 -16.26 16 10 C 0.19 4.56 5.91 -0.29 0.00 4.56 16 11 C -0.18 -3.44 6.96 -89.22 -0.62 -4.06 16 12 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 13 C -0.18 -3.38 7.06 -89.22 -0.63 -4.01 16 14 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 15 C 0.16 3.47 7.05 -2.40 -0.02 3.45 16 16 C 0.10 1.81 5.97 -67.94 -0.41 1.40 16 17 H 0.13 2.66 7.40 -51.93 -0.38 2.28 16 18 N -0.70 -10.14 5.55 -55.15 -0.31 -10.45 16 19 C 0.60 9.77 7.78 -12.89 -0.10 9.67 16 20 O -0.53 -10.81 16.30 5.18 0.08 -10.72 16 21 C -0.28 -3.84 6.17 -104.65 -0.65 -4.49 16 22 C 0.13 1.33 11.44 -17.13 -0.20 1.13 16 23 N -0.31 -3.38 12.58 30.76 0.39 -2.99 16 24 N -0.31 -3.18 3.86 -11.97 -0.05 -3.23 16 25 C 0.16 0.93 11.29 -16.45 -0.19 0.74 16 26 C -0.22 -0.84 10.05 -39.83 -0.40 -1.24 16 27 C 0.18 1.23 11.28 -17.04 -0.19 1.04 16 28 N -0.44 -5.49 10.26 -12.00 -0.12 -5.62 16 29 C 0.32 4.17 7.74 -155.83 -1.21 2.96 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.09 2.52 6.57 -51.93 -0.34 2.18 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.39 4.34 7.74 -40.82 -0.32 4.03 16 36 H 0.21 1.27 7.46 -52.49 -0.39 0.88 16 37 H 0.18 0.36 8.06 -52.48 -0.42 -0.07 16 38 H 0.17 -0.10 8.06 -52.48 -0.42 -0.52 16 39 H 0.19 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -38.50 338.40 -9.12 -47.62 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.36 Total: 1.59 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -4.85 Total: 4.37 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -0.06 Total: -65.18 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -38.50 -9.12 -47.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961428575.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.737 kcal (2) G-P(sol) polarization free energy of solvation -38.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds