Wall clock time and date at job start Fri Apr 10 2020 18:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00239 * 2 1 4 4 H 1.48502 * 109.47438 * 270.00286 * 3 2 1 5 5 H 1.48500 * 109.46848 * 30.00490 * 3 2 1 6 6 H 1.48496 * 109.47193 * 150.00068 * 3 2 1 7 7 C 1.38816 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00297 * 189.09589 * 7 2 1 9 9 N 1.36942 * 119.99569 * 9.09625 * 7 2 1 10 10 C 1.48150 * 127.83749 * 15.57352 * 9 7 2 11 11 C 1.54390 * 104.61704 * 140.41568 * 10 9 7 12 12 H 1.09000 * 117.61079 * 242.76255 * 11 10 9 13 13 C 1.54137 * 104.92966 * 23.84251 * 11 10 9 14 14 H 1.09004 * 121.82839 * 222.20246 * 13 11 10 15 15 C 1.48143 * 127.83969 * 195.57262 * 9 7 2 16 16 C 1.52994 * 118.12103 * 87.19333 * 11 10 9 17 17 H 1.08992 * 117.44552 * 16.10161 * 16 11 10 18 18 N 1.46501 * 117.44212 * 160.85548 * 16 11 10 19 19 C 1.34779 * 119.99957 * 205.16334 * 18 16 11 20 20 O 1.21754 * 119.99985 * 359.97438 * 19 18 16 21 21 C 1.46192 * 119.99790 * 179.97438 * 19 18 16 22 22 C 1.38726 * 126.76212 * 180.02562 * 21 19 18 23 23 N 1.32280 * 108.17886 * 180.02562 * 22 21 19 24 24 C 1.33137 * 109.71213 * 359.97438 * 23 22 21 25 25 C 1.40631 * 132.28773 * 180.02562 * 24 23 22 26 26 C 1.36304 * 119.22616 * 179.97438 * 25 24 23 27 27 C 1.39875 * 120.11832 * 0.02562 * 26 25 24 28 28 N 1.30808 * 120.78107 * 0.02562 * 27 26 25 29 29 N 1.36650 * 108.63221 * 359.73487 * 24 23 22 30 30 H 0.97006 * 119.99541 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.40431 * 21.62838 * 10 9 7 32 32 H 1.09000 * 110.40570 * 259.20183 * 10 9 7 33 33 H 1.08993 * 110.40707 * 338.37152 * 15 9 7 34 34 H 1.09000 * 110.40840 * 100.79950 * 15 9 7 35 35 H 0.97006 * 120.00020 * 25.16155 * 18 16 11 36 36 H 1.07997 * 125.90738 * 0.02562 * 22 21 19 37 37 H 1.08003 * 120.38440 * 359.97438 * 25 24 23 38 38 H 1.07999 * 119.94424 * 180.02562 * 26 25 24 39 39 H 1.08000 * 119.60869 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0801 -1.2081 0.1473 9 7 1.3385 -2.3805 -0.1886 10 6 -0.0342 -2.5705 -0.7123 11 6 0.0637 -3.8160 -1.6194 12 1 -0.1486 -3.6860 -2.6806 13 6 1.2853 -4.5951 -1.0936 14 1 2.0094 -5.0523 -1.7680 15 6 1.8196 -3.7546 0.0856 16 6 -0.1185 -5.1923 -0.9766 17 1 -0.5682 -5.2278 0.0156 18 7 -0.4518 -6.3117 -1.8609 19 6 -1.1053 -7.3847 -1.3728 20 8 -1.4183 -7.4238 -0.1968 21 6 -1.4384 -8.5015 -2.2555 22 6 -2.1041 -9.6670 -1.9048 23 7 -2.2085 -10.4235 -2.9848 24 6 -1.6439 -9.8072 -4.0211 25 6 -1.4884 -10.1736 -5.3699 26 6 -0.8531 -9.3205 -6.2223 27 6 -0.3632 -8.0966 -5.7547 28 7 -0.5057 -7.7538 -4.5004 29 7 -1.1587 -8.6010 -3.6003 30 1 -0.4850 0.8401 0.0004 31 1 -0.3433 -1.7010 -1.2925 32 1 -0.7317 -2.7500 0.1058 33 1 2.9090 -3.7786 0.1074 34 1 1.4116 -4.1191 1.0284 35 1 -0.2022 -6.2807 -2.7978 36 1 -2.4731 -9.9138 -0.9203 37 1 -1.8679 -11.1198 -5.7262 38 1 -0.7276 -9.5899 -7.2606 39 1 0.1392 -7.4271 -6.4371 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961980269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:12 Heat of formation + Delta-G solvation = 157.145232 kcal Electronic energy + Delta-G solvation = -24735.913361 eV Core-core repulsion = 21069.183334 eV Total energy + Delta-G solvation = -3666.730027 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.95314 -39.71051 -38.62038 -38.03298 -34.63155 -34.09630 -32.60089 -31.67839 -30.48631 -29.68784 -27.15203 -25.89879 -25.22841 -24.24929 -22.90919 -21.48977 -20.76320 -20.29930 -19.30286 -18.79973 -17.98922 -16.94496 -16.70396 -16.62604 -16.33262 -16.12004 -14.76230 -14.57676 -14.48984 -14.25387 -14.16569 -13.64359 -13.45993 -13.24228 -13.10173 -12.74914 -12.22489 -11.70819 -11.69081 -11.51290 -11.49059 -11.00451 -10.83948 -10.53635 -10.40745 -10.22215 -10.16649 -10.06728 -9.92051 -9.73635 -9.20671 -8.78241 -8.68683 -8.29958 -6.87025 -5.79747 -3.14121 -0.16467 0.41891 1.27447 1.90401 2.80383 3.02419 3.13827 3.38236 3.43336 3.45600 3.53959 3.55595 3.97021 4.30134 4.32183 4.46734 4.62695 4.75766 4.85357 5.05953 5.16667 5.19768 5.25676 5.37469 5.39126 5.56442 5.70810 5.83275 5.90707 6.03373 6.13112 6.21883 6.53016 6.69978 6.76862 6.90424 6.94038 7.18295 7.34967 7.52861 7.56441 7.71209 8.16705 8.20193 9.10707 9.73394 10.50562 11.34635 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.026241 B = 0.002730 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.787559 B =10253.045211 C =10898.595099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.178 4.178 12 H 0.102 0.898 13 C -0.180 4.180 14 H 0.102 0.898 15 C 0.156 3.844 16 C 0.094 3.906 17 H 0.135 0.865 18 N -0.687 5.687 19 C 0.597 3.403 20 O -0.525 6.525 21 C -0.056 4.056 22 C 0.108 3.892 23 N -0.465 5.465 24 C 0.179 3.821 25 C -0.002 4.002 26 C -0.174 4.174 27 C 0.142 3.858 28 N -0.268 5.268 29 N -0.253 5.253 30 H 0.255 0.745 31 H 0.092 0.908 32 H 0.027 0.973 33 H 0.052 0.948 34 H 0.029 0.971 35 H 0.406 0.594 36 H 0.205 0.795 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.380 -20.667 -15.495 25.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.199 4.199 12 H 0.120 0.880 13 C -0.202 4.202 14 H 0.120 0.880 15 C 0.029 3.971 16 C -0.012 4.012 17 H 0.152 0.848 18 N -0.337 5.337 19 C 0.382 3.618 20 O -0.401 6.401 21 C -0.176 4.176 22 C -0.053 4.053 23 N -0.185 5.185 24 C -0.066 4.066 25 C -0.030 4.030 26 C -0.200 4.200 27 C -0.050 4.050 28 N -0.080 5.080 29 N -0.025 5.025 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.242 0.758 36 H 0.222 0.778 37 H 0.183 0.817 38 H 0.179 0.821 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.710 -20.279 -14.035 24.810 hybrid contribution 0.754 0.906 -1.231 1.705 sum -1.956 -19.372 -15.267 24.742 Atomic orbital electron populations 1.69899 1.05051 1.25441 1.55699 1.24909 0.95655 0.97993 1.01732 0.86096 0.78701 0.83226 0.77588 1.21542 1.21637 1.20530 1.19006 0.90836 0.82285 1.43400 0.90485 1.45178 1.13321 0.99984 1.73135 1.21074 0.86989 0.92342 0.93669 1.24627 1.02218 0.92439 1.00599 0.87970 1.24331 0.90398 1.02352 1.03102 0.88041 1.21116 0.97234 0.85790 0.92935 1.21904 0.98802 0.84806 0.95692 0.84771 1.45398 1.57199 1.17507 1.13547 1.16479 0.78312 0.80665 0.86315 1.90889 1.54361 1.79757 1.15118 1.21558 1.13723 1.02286 0.80019 1.23247 0.95943 0.87637 0.98496 1.70510 1.20707 1.29616 0.97642 1.21292 1.02781 0.85701 0.96796 1.20684 0.94131 1.00723 0.87437 1.21589 1.01365 0.94547 1.02548 1.24239 0.93437 0.96255 0.91057 1.75587 1.13217 1.16510 1.02650 1.46941 1.34704 1.13062 1.07800 0.93522 0.89009 0.95506 0.92938 0.95318 0.75790 0.77816 0.81672 0.82099 0.77812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.89 10.86 55.49 0.60 -26.29 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.95 29.56 -169.99 -5.03 16.92 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.36 10.35 -15.06 -0.16 -6.51 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.59 -15.37 3.38 -168.89 -0.57 -15.94 16 10 C 0.19 4.53 5.70 -2.41 -0.01 4.51 16 11 C -0.18 -3.48 7.05 -89.30 -0.63 -4.10 16 12 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 13 C -0.18 -3.36 7.04 -89.32 -0.63 -3.99 16 14 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 15 C 0.16 3.37 7.04 -2.43 -0.02 3.35 16 16 C 0.09 1.69 5.98 -67.93 -0.41 1.29 16 17 H 0.13 2.66 7.40 -51.93 -0.38 2.28 16 18 N -0.69 -10.90 5.56 -55.26 -0.31 -11.21 16 19 C 0.60 9.72 7.77 -13.07 -0.10 9.62 16 20 O -0.53 -9.92 16.47 5.14 0.08 -9.84 16 21 C -0.06 -0.78 7.10 -81.85 -0.58 -1.36 16 22 C 0.11 1.34 11.69 -17.18 -0.20 1.14 16 23 N -0.46 -5.65 11.25 -12.23 -0.14 -5.78 16 24 C 0.18 1.91 7.85 -156.06 -1.23 0.69 16 25 C 0.00 -0.01 10.11 -39.38 -0.40 -0.41 16 26 C -0.17 -0.65 10.03 -39.67 -0.40 -1.04 16 27 C 0.14 0.74 11.30 -17.38 -0.20 0.54 16 28 N -0.27 -2.66 10.04 30.62 0.31 -2.35 16 29 N -0.25 -3.04 4.05 -8.68 -0.04 -3.08 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.09 2.47 6.51 -51.93 -0.34 2.14 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.41 5.81 6.82 -40.82 -0.28 5.53 16 36 H 0.21 2.05 8.06 -52.49 -0.42 1.63 16 37 H 0.17 0.54 8.06 -52.48 -0.42 0.11 16 38 H 0.16 -0.03 8.06 -52.49 -0.42 -0.45 16 39 H 0.21 0.22 8.06 -52.49 -0.42 -0.20 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -35.43 336.75 -9.41 -44.84 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.35 Total: 4.19 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -5.05 Total: 3.46 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -0.14 Total: -64.65 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.43 -9.41 -44.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961980269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.982 kcal (2) G-P(sol) polarization free energy of solvation -35.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds