Wall clock time and date at job start Fri Apr 10 2020 18:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00239 * 2 1 4 4 H 1.48502 * 109.47438 * 270.00286 * 3 2 1 5 5 H 1.48500 * 109.46848 * 30.00490 * 3 2 1 6 6 H 1.48496 * 109.47193 * 150.00068 * 3 2 1 7 7 C 1.38816 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00297 * 189.09589 * 7 2 1 9 9 N 1.36942 * 119.99569 * 9.09625 * 7 2 1 10 10 C 1.48150 * 127.83749 * 15.57352 * 9 7 2 11 11 C 1.54390 * 104.61704 * 140.41568 * 10 9 7 12 12 H 1.09000 * 117.61079 * 242.76255 * 11 10 9 13 13 C 1.54137 * 104.92966 * 23.84251 * 11 10 9 14 14 H 1.09004 * 121.82839 * 222.20246 * 13 11 10 15 15 C 1.48143 * 127.83969 * 195.57262 * 9 7 2 16 16 C 1.52994 * 118.12103 * 87.19333 * 11 10 9 17 17 H 1.08992 * 117.44552 * 16.10161 * 16 11 10 18 18 N 1.46501 * 117.44212 * 160.85548 * 16 11 10 19 19 C 1.34779 * 119.99957 * 205.16334 * 18 16 11 20 20 O 1.21754 * 119.99985 * 359.97438 * 19 18 16 21 21 C 1.46192 * 119.99790 * 179.97438 * 19 18 16 22 22 C 1.38726 * 126.76212 * 180.02562 * 21 19 18 23 23 N 1.32280 * 108.17886 * 180.02562 * 22 21 19 24 24 C 1.33137 * 109.71213 * 359.97438 * 23 22 21 25 25 C 1.40631 * 132.28773 * 180.02562 * 24 23 22 26 26 C 1.36304 * 119.22616 * 179.97438 * 25 24 23 27 27 C 1.39875 * 120.11832 * 0.02562 * 26 25 24 28 28 N 1.30808 * 120.78107 * 0.02562 * 27 26 25 29 29 N 1.36650 * 108.63221 * 359.73487 * 24 23 22 30 30 H 0.97006 * 119.99541 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.40431 * 21.62838 * 10 9 7 32 32 H 1.09000 * 110.40570 * 259.20183 * 10 9 7 33 33 H 1.08993 * 110.40707 * 338.37152 * 15 9 7 34 34 H 1.09000 * 110.40840 * 100.79950 * 15 9 7 35 35 H 0.97006 * 120.00020 * 25.16155 * 18 16 11 36 36 H 1.07997 * 125.90738 * 0.02562 * 22 21 19 37 37 H 1.08003 * 120.38440 * 359.97438 * 25 24 23 38 38 H 1.07999 * 119.94424 * 180.02562 * 26 25 24 39 39 H 1.08000 * 119.60869 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0801 -1.2081 0.1473 9 7 1.3385 -2.3805 -0.1886 10 6 -0.0342 -2.5705 -0.7123 11 6 0.0637 -3.8160 -1.6194 12 1 -0.1486 -3.6860 -2.6806 13 6 1.2853 -4.5951 -1.0936 14 1 2.0094 -5.0523 -1.7680 15 6 1.8196 -3.7546 0.0856 16 6 -0.1185 -5.1923 -0.9766 17 1 -0.5682 -5.2278 0.0156 18 7 -0.4518 -6.3117 -1.8609 19 6 -1.1053 -7.3847 -1.3728 20 8 -1.4183 -7.4238 -0.1968 21 6 -1.4384 -8.5015 -2.2555 22 6 -2.1041 -9.6670 -1.9048 23 7 -2.2085 -10.4235 -2.9848 24 6 -1.6439 -9.8072 -4.0211 25 6 -1.4884 -10.1736 -5.3699 26 6 -0.8531 -9.3205 -6.2223 27 6 -0.3632 -8.0966 -5.7547 28 7 -0.5057 -7.7538 -4.5004 29 7 -1.1587 -8.6010 -3.6003 30 1 -0.4850 0.8401 0.0004 31 1 -0.3433 -1.7010 -1.2925 32 1 -0.7317 -2.7500 0.1058 33 1 2.9090 -3.7786 0.1074 34 1 1.4116 -4.1191 1.0284 35 1 -0.2022 -6.2807 -2.7978 36 1 -2.4731 -9.9138 -0.9203 37 1 -1.8679 -11.1198 -5.7262 38 1 -0.7276 -9.5899 -7.2606 39 1 0.1392 -7.4271 -6.4371 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961980269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:12 Heat of formation + Delta-G solvation = 132.273557 kcal Electronic energy + Delta-G solvation = -24736.991878 eV Core-core repulsion = 21069.183334 eV Total energy + Delta-G solvation = -3667.808544 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.71014 -41.11621 -39.84421 -38.96900 -36.17527 -34.99540 -34.18955 -32.40636 -32.16047 -30.65747 -28.97807 -27.71117 -26.01514 -25.13384 -23.96296 -22.91949 -22.03152 -21.72574 -20.96176 -19.79644 -18.88233 -18.57200 -17.82599 -17.43445 -17.38489 -16.91294 -16.71981 -15.82862 -15.80083 -15.41846 -15.09105 -14.92101 -14.71338 -14.65900 -13.86280 -13.81828 -13.79831 -13.38770 -13.29374 -12.93461 -12.72334 -12.39489 -12.22578 -12.16778 -12.05505 -11.91689 -11.72774 -11.46642 -11.18541 -10.89410 -10.74503 -10.65638 -9.90925 -9.40427 -8.94950 -7.92787 -5.30305 -0.65078 -0.32496 0.57524 1.10583 1.46939 1.48915 1.58239 1.77627 1.99598 2.21413 2.47648 2.78300 2.82226 2.97913 3.27216 3.52752 3.61664 3.73008 3.77781 3.83839 3.87283 4.07662 4.14569 4.22904 4.30841 4.40894 4.45507 4.71014 4.82095 4.83530 4.86183 4.95193 5.13688 5.21469 5.31447 5.33483 5.40574 5.46822 5.60961 6.14080 6.21825 6.32680 6.46886 6.94123 6.98206 7.64982 8.43616 9.21257 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.026241 B = 0.002730 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.787559 B =10253.045211 C =10898.595099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.984 3.016 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.242 4.242 8 H 0.084 0.916 9 N -0.615 5.615 10 C 0.191 3.809 11 C -0.175 4.175 12 H 0.123 0.877 13 C -0.162 4.162 14 H 0.131 0.869 15 C 0.150 3.850 16 C 0.110 3.890 17 H 0.113 0.887 18 N -0.679 5.679 19 C 0.599 3.401 20 O -0.564 6.564 21 C -0.098 4.098 22 C 0.110 3.890 23 N -0.492 5.492 24 C 0.184 3.816 25 C -0.027 4.027 26 C -0.135 4.135 27 C 0.151 3.849 28 N -0.311 5.311 29 N -0.263 5.263 30 H 0.251 0.749 31 H 0.062 0.938 32 H -0.002 1.002 33 H 0.067 0.933 34 H 0.021 0.979 35 H 0.416 0.584 36 H 0.213 0.787 37 H 0.195 0.805 38 H 0.215 0.785 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 -22.063 -19.378 29.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.812 3.188 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.371 4.371 8 H 0.102 0.898 9 N -0.339 5.339 10 C 0.064 3.936 11 C -0.196 4.196 12 H 0.141 0.859 13 C -0.183 4.183 14 H 0.149 0.851 15 C 0.024 3.976 16 C 0.003 3.997 17 H 0.130 0.870 18 N -0.329 5.329 19 C 0.387 3.613 20 O -0.443 6.443 21 C -0.217 4.217 22 C -0.052 4.052 23 N -0.212 5.212 24 C -0.062 4.062 25 C -0.054 4.054 26 C -0.160 4.160 27 C -0.039 4.039 28 N -0.123 5.123 29 N -0.033 5.033 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.016 0.984 33 H 0.085 0.915 34 H 0.039 0.961 35 H 0.254 0.746 36 H 0.230 0.770 37 H 0.212 0.788 38 H 0.232 0.768 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.131 -21.705 -17.943 28.184 hybrid contribution 0.291 1.240 -0.252 1.298 sum -0.840 -20.465 -18.195 27.397 Atomic orbital electron populations 1.70104 1.06634 1.25853 1.56990 1.25798 0.96517 1.01449 1.01878 0.85001 0.77669 0.78526 0.77637 1.20910 1.22177 1.19143 1.19419 0.91457 0.83365 1.42850 0.89785 1.45466 1.13683 1.01107 1.73676 1.20793 0.86197 0.93438 0.93129 1.24309 1.03647 0.91036 1.00603 0.85872 1.24233 0.90730 1.01482 1.01835 0.85118 1.21240 0.98123 0.84354 0.93836 1.21496 0.98268 0.84825 0.95063 0.86962 1.45217 1.57342 1.16708 1.13626 1.16779 0.77319 0.81013 0.86210 1.90851 1.55904 1.80642 1.16879 1.21035 1.17149 1.02194 0.81285 1.23452 0.95253 0.87365 0.99168 1.70515 1.22381 1.30208 0.98097 1.22122 1.00944 0.84988 0.98184 1.21226 0.95752 1.02871 0.85534 1.22238 0.97075 0.92392 1.04314 1.25265 0.91398 0.97359 0.89877 1.75641 1.14975 1.17298 1.04385 1.46948 1.35150 1.13759 1.07415 0.94042 0.91983 0.98429 0.91507 0.96082 0.74560 0.77048 0.78811 0.76841 0.73313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.66 10.86 21.65 0.24 -57.42 16 2 C -0.06 -3.59 5.40 84.86 0.46 -3.13 16 3 Si 0.98 45.55 29.56 68.60 2.03 47.58 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.24 -13.72 10.35 84.03 0.87 -12.85 16 8 H 0.08 4.51 7.84 -2.91 -0.02 4.49 16 9 N -0.62 -32.59 3.38 -688.23 -2.33 -34.91 16 10 C 0.19 9.70 5.70 86.53 0.49 10.20 16 11 C -0.17 -6.87 7.05 -9.94 -0.07 -6.94 16 12 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 13 C -0.16 -5.89 7.04 -9.95 -0.07 -5.96 16 14 H 0.13 4.06 8.14 -2.39 -0.02 4.04 16 15 C 0.15 6.51 7.04 86.52 0.61 7.12 16 16 C 0.11 4.04 5.98 44.99 0.27 4.31 16 17 H 0.11 4.69 7.40 -2.39 -0.02 4.67 16 18 N -0.68 -21.55 5.56 -446.95 -2.48 -24.04 16 19 C 0.60 20.21 7.77 86.31 0.67 20.88 16 20 O -0.56 -22.51 16.47 -4.52 -0.07 -22.58 16 21 C -0.10 -2.79 7.10 40.40 0.29 -2.51 16 22 C 0.11 2.82 11.69 84.74 0.99 3.81 16 23 N -0.49 -11.88 11.25 -192.62 -2.17 -14.05 16 24 C 0.18 3.66 7.85 134.00 1.05 4.71 16 25 C -0.03 -0.22 10.11 22.40 0.23 0.01 16 26 C -0.13 -0.21 10.03 22.22 0.22 0.01 16 27 C 0.15 0.84 11.30 85.24 0.96 1.80 16 28 N -0.31 -5.36 10.04 -57.04 -0.57 -5.93 16 29 N -0.26 -6.06 4.05 -181.37 -0.74 -6.79 16 30 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 31 H 0.06 3.51 6.51 -2.39 -0.02 3.49 16 32 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.42 11.50 6.82 -92.70 -0.63 10.86 16 36 H 0.21 4.64 8.06 -2.91 -0.02 4.62 16 37 H 0.19 0.41 8.06 -2.91 -0.02 0.39 16 38 H 0.21 -1.83 8.06 -2.91 -0.02 -1.86 16 39 H 0.25 -1.08 8.06 -2.91 -0.02 -1.10 16 Total: -1.00 -82.79 336.75 1.35 -81.44 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.47 Total: 15.25 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 6.97 Total: 21.45 kcal Atomic # 7 Polarization: -135.09 SS G_CDS: -8.05 Total: -143.14 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.07 Total: -22.58 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -82.79 1.35 -81.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961980269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.714 kcal (2) G-P(sol) polarization free energy of solvation -82.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds