Wall clock time and date at job start Fri Apr 10 2020 18:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48502 * 109.47203 * 270.00431 * 3 2 1 5 5 H 1.48500 * 109.46990 * 30.00002 * 3 2 1 6 6 H 1.48495 * 109.47348 * 149.99831 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.54288 * 104.96091 * 23.86829 * 11 10 9 14 14 H 1.09002 * 121.81761 * 222.17258 * 13 11 10 15 15 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 16 16 C 1.53001 * 59.72294 * 114.13553 * 13 11 10 17 17 H 1.08996 * 117.44388 * 252.35672 * 16 13 11 18 18 N 1.46497 * 117.44114 * 107.60285 * 16 13 11 19 19 C 1.34777 * 120.00128 * 155.00200 * 18 16 13 20 20 O 1.21549 * 119.99787 * 0.02562 * 19 18 16 21 21 C 1.47883 * 120.00087 * 180.02562 * 19 18 16 22 22 C 1.39899 * 125.69071 * 179.72066 * 21 19 18 23 23 C 1.38579 * 107.59156 * 179.83684 * 22 21 19 24 24 N 1.34118 * 132.34810 * 180.02562 * 23 22 21 25 25 C 1.31131 * 120.84447 * 180.37519 * 24 23 22 26 26 C 1.40342 * 120.29733 * 0.02562 * 25 24 23 27 27 C 1.35450 * 119.46573 * 359.97438 * 26 25 24 28 28 N 1.36679 * 119.13880 * 0.03604 * 27 26 25 29 29 N 1.32372 * 125.69369 * 0.02562 * 21 19 18 30 30 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 32 32 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 33 33 H 1.08997 * 110.21952 * 101.72307 * 15 9 7 34 34 H 1.09001 * 112.25708 * 338.13628 * 15 9 7 35 35 H 0.97006 * 120.00392 * 334.99965 * 18 16 13 36 36 H 1.08000 * 126.20690 * 359.97438 * 22 21 19 37 37 H 1.07999 * 119.84865 * 179.97438 * 25 24 23 38 38 H 1.08000 * 120.26596 * 179.97438 * 26 25 24 39 39 H 1.08001 * 120.42889 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.3710 -3.7838 0.9514 14 1 -0.9345 -3.6104 1.8682 15 6 -0.1793 -2.5892 -0.0071 16 6 -0.2957 -5.1962 0.3680 17 1 -0.3530 -5.2957 -0.7159 18 7 -0.9191 -6.2776 1.1350 19 6 -1.3384 -7.3940 0.5072 20 8 -1.1990 -7.5039 -0.6953 21 6 -1.9682 -8.4854 1.2813 22 6 -2.4496 -9.6881 0.7533 23 6 -2.9565 -10.4343 1.8053 24 7 -3.5294 -11.6457 1.8602 25 6 -3.9420 -12.1432 3.0011 26 6 -3.7901 -11.4114 4.1889 27 6 -3.2131 -10.1866 4.1477 28 7 -2.7914 -9.6897 2.9463 29 7 -2.1756 -8.4849 2.5887 30 1 -0.4850 0.8400 0.0004 31 1 2.9073 -3.7538 0.3762 32 1 1.8506 -4.1842 -1.0040 33 1 -0.5204 -2.8478 -1.0095 34 1 -0.7143 -1.7149 0.3636 35 1 -1.0300 -6.1901 2.0947 36 1 -2.4280 -9.9828 -0.2855 37 1 -4.4016 -13.1202 3.0266 38 1 -4.1305 -11.8215 5.1282 39 1 -3.0881 -9.6102 5.0524 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962113464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:06 Heat of formation + Delta-G solvation = 137.357162 kcal Electronic energy + Delta-G solvation = -24157.615631 eV Core-core repulsion = 20490.027530 eV Total energy + Delta-G solvation = -3667.588102 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.44367 -41.20757 -39.87527 -38.78357 -36.09328 -35.11454 -34.43256 -32.51641 -31.75722 -30.29101 -28.84685 -27.84465 -26.42221 -25.09670 -23.96006 -23.01421 -22.02758 -21.36270 -20.82598 -19.45161 -18.94438 -18.90209 -17.87240 -17.40537 -17.31954 -16.71615 -16.67055 -16.00718 -15.77726 -15.40939 -15.28157 -14.90769 -14.61596 -14.54940 -13.87609 -13.81615 -13.69368 -13.27209 -13.11976 -13.03249 -12.73402 -12.54483 -12.38586 -12.12369 -12.00810 -11.77995 -11.69509 -11.57739 -10.98093 -10.94740 -10.71199 -10.67694 -9.84823 -9.15176 -8.97018 -7.75776 -5.23184 -0.55300 -0.36391 0.62162 0.81710 1.48574 1.50561 1.59296 1.68736 1.98378 2.38314 2.49578 2.76265 2.82122 2.83602 3.33185 3.50848 3.56817 3.64378 3.80868 3.87060 3.99041 4.11840 4.18633 4.33639 4.36339 4.46972 4.53461 4.61425 4.72525 4.87650 4.97834 5.05045 5.05603 5.24256 5.27947 5.37311 5.45800 5.46258 5.77012 5.96112 6.25308 6.31840 6.55430 6.86742 7.02254 7.69259 8.44033 9.25976 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.040925 B = 0.002214 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.005959 B =12646.263287 C =12922.983864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.071 4.071 3 Si 0.985 3.015 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.230 4.230 8 H 0.085 0.915 9 N -0.625 5.625 10 C 0.154 3.846 11 C -0.167 4.167 12 H 0.131 0.869 13 C -0.171 4.171 14 H 0.119 0.881 15 C 0.154 3.846 16 C 0.111 3.889 17 H 0.117 0.883 18 N -0.666 5.666 19 C 0.604 3.396 20 O -0.551 6.551 21 C 0.063 3.937 22 C -0.233 4.233 23 C 0.248 3.752 24 N -0.495 5.495 25 C 0.189 3.811 26 C -0.187 4.187 27 C 0.134 3.866 28 N -0.305 5.305 29 N -0.292 5.292 30 H 0.249 0.751 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.001 0.999 34 H 0.110 0.890 35 H 0.418 0.582 36 H 0.165 0.835 37 H 0.228 0.772 38 H 0.225 0.775 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.876 -26.971 14.585 32.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.263 4.263 3 Si 0.813 3.187 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.358 4.358 8 H 0.103 0.897 9 N -0.350 5.350 10 C 0.028 3.972 11 C -0.188 4.188 12 H 0.148 0.852 13 C -0.192 4.192 14 H 0.137 0.863 15 C 0.030 3.970 16 C 0.005 3.995 17 H 0.135 0.865 18 N -0.315 5.315 19 C 0.388 3.612 20 O -0.427 6.427 21 C -0.095 4.095 22 C -0.265 4.265 23 C 0.020 3.980 24 N -0.207 5.207 25 C 0.007 3.993 26 C -0.209 4.209 27 C 0.003 3.997 28 N -0.079 5.079 29 N -0.124 5.124 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.019 0.981 34 H 0.127 0.873 35 H 0.256 0.744 36 H 0.183 0.817 37 H 0.244 0.756 38 H 0.241 0.759 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.539 -26.298 13.821 31.202 hybrid contribution 0.314 1.126 0.032 1.169 sum -9.226 -25.171 13.853 30.177 Atomic orbital electron populations 1.69736 1.06254 1.25053 1.58937 1.25627 0.96641 1.00963 1.03094 0.84971 0.77570 0.78800 0.77321 1.21607 1.21920 1.19340 1.19497 0.90986 0.83292 1.42034 0.89677 1.46430 1.02077 1.00517 1.85938 1.21216 0.95926 0.84284 0.95741 1.24330 0.90182 1.01765 1.02562 0.85163 1.24331 1.01327 0.90833 1.02681 0.86314 1.22310 0.84917 0.96068 0.93731 1.21602 0.97272 0.84958 0.95695 0.86518 1.45061 1.58997 1.15409 1.12041 1.17026 0.77484 0.80836 0.85896 1.90806 1.57005 1.80099 1.14787 1.21681 1.00243 0.95807 0.91725 1.20990 1.11531 0.93978 1.00017 1.20568 0.99788 0.90477 0.87147 1.68378 1.13588 1.07711 1.31061 1.24479 0.88229 1.00676 0.85950 1.22588 1.01887 0.92815 1.03657 1.23078 0.92937 0.96249 0.87473 1.47373 1.38619 1.13157 1.08733 1.77987 1.21625 1.00117 1.12640 0.94120 0.91791 0.95555 0.98127 0.87294 0.74434 0.81748 0.75617 0.75884 0.77014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.70 10.12 21.65 0.22 -56.48 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.99 45.87 29.55 68.60 2.03 47.90 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.23 -12.97 10.42 84.03 0.88 -12.09 16 8 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 9 N -0.62 -32.93 3.46 -678.23 -2.35 -35.28 16 10 C 0.15 6.59 7.05 86.53 0.61 7.20 16 11 C -0.17 -6.05 7.06 -9.88 -0.07 -6.12 16 12 H 0.13 4.07 8.14 -2.39 -0.02 4.05 16 13 C -0.17 -6.72 6.96 -9.90 -0.07 -6.79 16 14 H 0.12 4.29 8.14 -2.39 -0.02 4.27 16 15 C 0.15 7.78 6.43 85.78 0.55 8.33 16 16 C 0.11 3.93 5.97 44.99 0.27 4.20 16 17 H 0.12 4.64 7.40 -2.39 -0.02 4.62 16 18 N -0.67 -20.15 5.56 -445.37 -2.48 -22.62 16 19 C 0.60 19.89 7.83 86.80 0.68 20.57 16 20 O -0.55 -21.77 16.45 -3.87 -0.06 -21.83 16 21 C 0.06 1.83 7.05 42.02 0.30 2.13 16 22 C -0.23 -6.50 10.65 22.75 0.24 -6.26 16 23 C 0.25 5.70 7.90 133.00 1.05 6.75 16 24 N -0.49 -8.62 10.48 -192.59 -2.02 -10.64 16 25 C 0.19 1.04 11.27 85.31 0.96 2.00 16 26 C -0.19 -0.19 10.05 22.14 0.22 0.04 16 27 C 0.13 1.06 11.30 83.29 0.94 2.00 16 28 N -0.31 -5.99 3.90 -192.50 -0.75 -6.74 16 29 N -0.29 -7.34 12.34 -48.78 -0.60 -7.94 16 30 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.11 6.18 5.34 -2.39 -0.01 6.17 16 35 H 0.42 10.74 8.51 -92.70 -0.79 9.95 16 36 H 0.16 4.57 8.06 -2.91 -0.02 4.55 16 37 H 0.23 -0.94 8.06 -2.91 -0.02 -0.97 16 38 H 0.22 -2.14 8.06 -2.91 -0.02 -2.16 16 39 H 0.21 0.20 8.06 -2.91 -0.02 0.18 16 Total: -1.00 -80.77 338.96 1.33 -79.44 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.32 Total: 15.83 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 7.03 Total: 18.36 kcal Atomic # 7 Polarization: -131.73 SS G_CDS: -7.98 Total: -139.70 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.06 Total: -21.83 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -80.77 1.33 -79.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962113464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.796 kcal (2) G-P(sol) polarization free energy of solvation -80.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds